Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011312

Physical Location & Seq

Genomic Coordinates Reverse (-)

33761795 .. 33764085

Gene Structure 2291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGATCATAAAGATAAGGTTTGTGCAGACCCCTGGGCAAAGGCTTGCTCGGATCGGCTGCCTTTTGCCAATTTCGGTTCACACCAGCATCAAAACAAGTGGGAAGATCCCTCTATTTTAGATTATGGCATGAGGATTGAACCGTCCTTCCAGAAACTCAGCCAGCCGTCCGAGGATCAAACTTCACTTCCTTGCAACTCCAACAATGAGAAAACAATTGCAGATGGAGAGGATGTTCAGATGAATGAGATACTCCATGCCAGTAAAATTCAAGATTGGGATCCAAGAACAATGTTGACCAATCTTTCGTTCCTGGAACAAAAGATCCATCAGCTCCAGGATTTAGTGCATTTGATTGTTGGCCGGAGGGGCCAAGTTCAAGGACGACCGGATGAGCTGGTGGCTCAACAACAGCAGCTCATAACTGCTGATCTTACTTCAATCATAGCTCAATTGATCTCTACGGCAGGTAGTCTTCTTCCATCCGTTAAGCATACGCTTTCCACTGCAACATCTTCTGTGGGACAGTTTGGGCAGCTTGGTGGTTCATTTGTTTCTTCTGGAGCAGGAACTGAAGCTCCGGTTAAGTTGCAAACTAATAGCGGAAGCAAGTTATCTGAGCAGCCCAACCAAACTGACCTGATCACTAACTATGGGACTGAGCAAAGCTACAACATTGAAGAACATGAATCAAAAGATGAAGAGGATGCTGATGATGGCGAGAACCTTCCGCCTGGTACTTATGAAATCTTACAGCTAGAGAAAGAAGAAATCCTTGCACCACACACTCATTTCTGTGCTATATGTGGAAAGGGATTCAAGAGGGATGCAAACTTAAGGATGCACATGAGAGGTCATGGAGACGAGTACAAAACCCCAGCTGCACTTGCAAAGCCCAACAAAGAATCTAGTTCTGAACCAACACTCATCAAAAGGTATTCATGCCCTTATGCTGGCTGCAAGCGGAACAAGGATCACAAGAAGTTTCAGCCTTTGAAGACCATTTTATGTGTCAAAAATCACTACAAGAGAACCCACTGTGACAAAAGTTACACTTGCAGCAGGTGCAACACCAAGAAATTCTCCGTTATTGCAGATCTCAAAACTCATGAGAAGCACTGTGGTAAGGACAAGTGGCTTTGTTCTTGTGGCACAACCTTCTCCAGGAAAGACAAGCTTTTTGGACATATTGCGCTGTTTCAAGGTCACACTCCTGCCATTCCCCTGGACGAAACAAAAACAACTGTTGGGCCATCTGAACATGGGGAAGGTAGTGAAGCACCAAACAGAGTTGGTAGCATCAACTTCAATTTTGGCTCCATTGTGCCAAGTGGCAGTGGTTTAGTTCAGAATATTATGGATGTGAAAGAAAGTGTCGATGATCCTACTAGTTATTTCTCGCCGTTGAATTTTGATACATGTAATTTTGATGGGTTTCATGAGTTCCCTCGACCCCCATTTGAAGATTCAGAGAGTTCATTCTCTTTTCTTATGCCAGGGTCCTGTAATTACACTCAGAAAACTGGTGGCGAGTCAAATTCCAAAAAAATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043620 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

518

Amino Acids

57.52

Weight (kDa)

5.97

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	313 - 347	2.5e-19	STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C	PF23118	378 - 407	9.6e-23	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34370 AT1G34370 AT1G34370
fragaria_vesca	FvH4_2g12260 FvH4_2g12260
malus_domestica	MD05G1040600.v1.1 MD10G1046700.v1.1
prunus_persica	Prupe.8G055100_v2.0.a1 Prupe.8G055100_v2.0.a1
pyrus_communis	pycom05g03320
rosa_chinensis	RchiOBHm_Chr6g0272161
rosa_laevigata	RLG00000013695
rosa_multiflora	Rmu_sc0005748.1_g000013
rosa_roxburghii	Rroxscaffold_7G00196540
rosa_rugosa	Rorug06G0066600
rosa_samantha	Rh6AG183400 Rh6BG183700 Rh6CG184800 Rh6DG176500
rosa_wichuraiana	Rw6G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1053
Acc36I	ACCTGC	2 cut(s)	458, 1053
AciI	CCGC	3 cut(s)	603, 731, 964
AclWI	GGATC	9 cut(s)	12, 60, 101, 183, 275, 288, 319, 981, 1376
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	4 cut(s)	267, 1079, 1408, 1537
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	739, 869
AfiI	CCNNNNNNNGG	2 cut(s)	953, 1164
AflII	CTTAAG	1 cut(s)	835
AflIII	ACRYGT	1 cut(s)	1418
AhlI	ACTAGT	1 cut(s)	1388
AjnI	CCWGG	7 cut(s)	32, 312, 336, 733, 1163, 1224, 1495
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AloI	GAACNNNNNNTCC	8 cut(s)	132, 164, 219, 251, 309, 341, 562, 594
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	9 cut(s)	12, 60, 101, 183, 275, 288, 319, 981, 1376
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	3 cut(s)	361, 370, 1250
ApeKI	GCWGC	7 cut(s)	58, 415, 535, 622, 881, 957, 1059
ApoI	RAATTY	4 cut(s)	267, 1079, 1408, 1537
ArsI	GACNNNNNNTTYG	4 cut(s)	289, 321, 1163, 1195
AspLEI	GCGC	1 cut(s)	1195
AspS9I	GGNCC	3 cut(s)	370, 1250, 1500
AvaII	GGWCC	1 cut(s)	1500
BamHI	GGATCC	1 cut(s)	280
BbsI	GAAGAC	2 cut(s)	467, 1004
BbvI	GCAGC	7 cut(s)	45, 427, 547, 634, 868, 944, 1071
BccI	CCATC	6 cut(s)	218, 336, 490, 710, 1261, 1424
BceAI	ACGGC	3 cut(s)	151, 480, 1387
BciT130I	CCWGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	855
BcuI	ACTAGT	1 cut(s)	1388
BfaI	CTAG	3 cut(s)	758, 909, 1389
BfrI	CTTAAG	1 cut(s)	835
BfuAI	ACCTGC	2 cut(s)	458, 1053
BglI	GCCNNNNNGGC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	7 cut(s)	59, 416, 536, 623, 882, 958, 1060
BlsI	GCNGC	7 cut(s)	60, 417, 537, 624, 883, 959, 1061
Bme1390I	CCNGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
Bme18I	GGWCC	1 cut(s)	1500
BmgT120I	GGNCC	3 cut(s)	370, 1250, 1500
BmiI	GGNNCC	4 cut(s)	282, 371, 1318, 1501
BmrFI	CCNGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
BmsI	GCATC	5 cut(s)	97, 697, 817, 831, 1308
BpiI	GAAGAC	2 cut(s)	467, 1004
BpmI	CTGGAG	3 cut(s)	320, 582, 1147
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	5 cut(s)	32, 33, 171, 1224, 1496
BsaWI	WCCGGW	2 cut(s)	388, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 562, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	953, 1164
Bse1I	ACTGG	2 cut(s)	261, 1528
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
BseDI	CCNNGG	5 cut(s)	32, 33, 171, 1224, 1496
BseGI	GGATG	7 cut(s)	238, 397, 482, 712, 832, 846, 1366
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	953, 1164
BseMII	CTCAG	4 cut(s)	172, 609, 651, 1529
BseNI	ACTGG	2 cut(s)	261, 1528
BseXI	GCAGC	7 cut(s)	45, 427, 547, 634, 868, 944, 1071
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	45, 867
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	363, 372, 1252
BsiEI	CGRYCG	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	364, 389, 581
BslFI	GGGAC	2 cut(s)	537, 670
BslI	CCNNNNNNNGG	2 cut(s)	953, 1164
BsmAI	GTCTC	1 cut(s)	855
BsmBI	CGTCTC	1 cut(s)	855
BsmFI	GGGAC	2 cut(s)	537, 670
BsnI	GGCC	3 cut(s)	363, 372, 1252
BspACI	CCGC	3 cut(s)	603, 731, 964
BspANI	GGCC	3 cut(s)	363, 372, 1252
BspCNI	CTCAG	4 cut(s)	171, 610, 652, 1528
BspHI	TCATGA	2 cut(s)	1108, 1438
BspLI	GGNNCC	4 cut(s)	282, 371, 1318, 1501
BspMI	ACCTGC	2 cut(s)	458, 1053
BspPI	GGATC	9 cut(s)	12, 60, 101, 183, 275, 288, 319, 981, 1376
BspTI	CTTAAG	1 cut(s)	835
BsrI	ACTGG	2 cut(s)	261, 1528
BssECI	CCNNGG	5 cut(s)	32, 33, 171, 1224, 1496
Bst2UI	CCWGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
Bst4CI	ACNGT	5 cut(s)	144, 528, 1040, 1121, 1246
Bst6I	CTCTTC	1 cut(s)	696
BstAFI	CTTAAG	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	1065
BstC8I	GCNNGC	4 cut(s)	46, 164, 955, 962
BstDEI	CTNAG	4 cut(s)	158, 618, 660, 1515
BstENI	CCTNNNNNAGG	1 cut(s)	1162
BstF5I	GGATG	7 cut(s)	238, 397, 482, 712, 832, 846, 1366
BstHHI	GCGC	1 cut(s)	1195
BstMAI	GTCTC	1 cut(s)	855
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	3 cut(s)	369, 887, 1065
BstNI	CCWGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
BstNSI	RCATGY	1 cut(s)	1422
BstSCI	CCNGG	7 cut(s)	32, 312, 336, 733, 1163, 1224, 1495
BstV1I	GCAGC	7 cut(s)	45, 427, 547, 634, 868, 944, 1071
BstV2I	GAAGAC	2 cut(s)	467, 1004
BstX2I	RGATCY	4 cut(s)	106, 280, 324, 1096
BstXI	CCANNNNNNTGG	1 cut(s)	1225
BstYI	RGATCY	4 cut(s)	106, 280, 324, 1096
BsuRI	GGCC	3 cut(s)	363, 372, 1252
BtsCI	GGATG	7 cut(s)	238, 397, 482, 712, 832, 846, 1366
BtsI	GCAGTG	2 cut(s)	504, 1342
BtsIMutI	CAGTG	4 cut(s)	504, 1036, 1117, 1342
BveI	ACCTGC	2 cut(s)	458, 1053
Cac8I	GCNNGC	4 cut(s)	46, 164, 955, 962
CaiI	CAGNNNCTG	1 cut(s)	572
CciI	TCATGA	2 cut(s)	1108, 1438
CfoI	GCGC	1 cut(s)	1195
Cfr13I	GGNCC	3 cut(s)	370, 1250, 1500
Csp6I	GTAC	2 cut(s)	738, 868
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviQI	GTAC	2 cut(s)	738, 868
DdeI	CTNAG	4 cut(s)	158, 618, 660, 1515
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
EciI	GGCGGA	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	1500
Eco57I	CTGAAG	1 cut(s)	594
EcoNI	CCTNNNNNAGG	1 cut(s)	1162
EcoO109I	RGGNCCY	1 cut(s)	1500
EcoRII	CCWGG	7 cut(s)	32, 312, 336, 733, 1163, 1224, 1495
Esp3I	CGTCTC	1 cut(s)	855
FalI	AAGNNNNNCTT	6 cut(s)	759, 791, 1039, 1071, 1161, 1193
FaqI	GGGAC	2 cut(s)	537, 670
FbaI	TGATCA	1 cut(s)	642
Fnu4HI	GCNGC	7 cut(s)	59, 416, 536, 623, 882, 958, 1060
FokI	GGATG	7 cut(s)	245, 404, 469, 719, 839, 853, 1373
Fsp4HI	GCNGC	7 cut(s)	59, 416, 536, 623, 882, 958, 1060
FspBI	CTAG	3 cut(s)	758, 909, 1389
GlaI	GCGC	1 cut(s)	1194
GluI	GCNGC	7 cut(s)	59, 416, 536, 623, 882, 958, 1060
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	3 cut(s)	320, 582, 1147
HaeIII	GGCC	3 cut(s)	363, 372, 1252
HapII	CCGG	3 cut(s)	364, 389, 581
HhaI	GCGC	1 cut(s)	1195
Hin6I	GCGC	1 cut(s)	1193
HinP1I	GCGC	1 cut(s)	1193
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	1175
HinfI	GANTC	5 cut(s)	689, 816, 905, 1466, 1532
HpaII	CCGG	3 cut(s)	364, 389, 581
Hpy166II	GTNNAC	2 cut(s)	80, 297
Hpy188I	TCNGA	9 cut(s)	52, 172, 240, 619, 916, 1258, 1350, 1471, 1518
Hpy188III	TCNNGA	6 cut(s)	151, 272, 561, 820, 1109, 1439
Hpy8I	GTNNAC	2 cut(s)	80, 297
HpyAV	CCTTC	4 cut(s)	157, 737, 1168, 1262
HpyCH4III	ACNGT	5 cut(s)	144, 528, 1040, 1121, 1246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	369, 887, 1065
HpyF3I	CTNAG	4 cut(s)	158, 618, 660, 1515
HspAI	GCGC	1 cut(s)	1193
Ksp22I	TGATCA	1 cut(s)	642
LmnI	GCTCC	4 cut(s)	339, 563, 583, 1322
Lsp1109I	GCAGC	7 cut(s)	45, 427, 547, 634, 868, 944, 1071
LweI	GCATC	5 cut(s)	97, 697, 817, 831, 1308
MaeI	CTAG	3 cut(s)	758, 909, 1389
MaeIII	GTNAC	3 cut(s)	1040, 1049, 1205
MfeI	CAATTG	2 cut(s)	216, 452
MflI	RGATCY	4 cut(s)	106, 280, 324, 1096
MlyI	GAGTC	1 cut(s)	1541
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	9 cut(s)	121, 126, 166, 223, 360, 697, 816, 845, 1458
MseI	TTAA	3 cut(s)	489, 585, 836
MslI	CAYNNNNRTG	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	881
MspCI	CTTAAG	1 cut(s)	835
MspI	CCGG	3 cut(s)	364, 389, 581
MspR9I	CCNGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
MunI	CAATTG	2 cut(s)	216, 452
MvaI	CCWGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
MwoI	GCNNNNNNNGC	3 cut(s)	369, 887, 1065
NlaIV	GGNNCC	4 cut(s)	282, 371, 1318, 1501
NmuCI	GTSAC	2 cut(s)	1040, 1205
NspI	RCATGY	1 cut(s)	1422
PagI	TCATGA	2 cut(s)	1108, 1438
PaqCI	CACCTGC	1 cut(s)	1053
PasI	CCCWGGG	1 cut(s)	33
PciI	ACATGT	1 cut(s)	1418
PfeI	GAWTC	4 cut(s)	689, 816, 905, 1466
PfoI	TCCNGGA	3 cut(s)	312, 336, 1163
PkrI	GCNGC	7 cut(s)	60, 417, 537, 624, 883, 959, 1061
PleI	GAGTC	1 cut(s)	1540
PpsI	GAGTC	1 cut(s)	1540
PpuMI	RGGWCCY	1 cut(s)	1500
PscI	ACATGT	1 cut(s)	1418
Psp5II	RGGWCCY	1 cut(s)	1500
Psp6I	CCWGG	7 cut(s)	32, 312, 336, 733, 1163, 1224, 1495
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	7 cut(s)	32, 312, 336, 733, 1163, 1224, 1495
PspN4I	GGNNCC	4 cut(s)	282, 371, 1318, 1501
PspPI	GGNCC	3 cut(s)	370, 1250, 1500
PspPPI	RGGWCCY	1 cut(s)	1500
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	4 cut(s)	106, 280, 324, 1096
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	2 cut(s)	739, 869
RsaNI	GTAC	2 cut(s)	738, 868
RseI	CAYNNNNRTG	1 cut(s)	795
SaqAI	TTAA	3 cut(s)	489, 585, 836
SatI	GCNGC	7 cut(s)	59, 416, 536, 623, 882, 958, 1060
Sau96I	GGNCC	3 cut(s)	370, 1250, 1500
SchI	GAGTC	1 cut(s)	1541
ScrFI	CCNGG	7 cut(s)	34, 314, 338, 735, 1165, 1226, 1497
SfaNI	GCATC	5 cut(s)	97, 697, 817, 831, 1308
SfiI	GGCCNNNNNGGCC	1 cut(s)	369
SinI	GGWCC	1 cut(s)	1500
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	835
SmoI	CTYRAG	1 cut(s)	835
SpeI	ACTAGT	1 cut(s)	1388
SsiI	CCGC	3 cut(s)	603, 731, 964
SspI	AATATT	1 cut(s)	1354
SspMI	CTAG	3 cut(s)	758, 909, 1389
StyD4I	CCNGG	7 cut(s)	32, 312, 336, 733, 1163, 1224, 1495
TaaI	ACNGT	5 cut(s)	144, 528, 1040, 1121, 1246
TaqI	TCGA	2 cut(s)	1377, 1450
TatI	WGTACW	1 cut(s)	867
TfiI	GAWTC	4 cut(s)	689, 816, 905, 1466
Tru1I	TTAA	3 cut(s)	489, 585, 836
Tru9I	TTAA	3 cut(s)	489, 585, 836
TscAI	CASTG	4 cut(s)	511, 1043, 1124, 1342
TseFI	GTSAC	2 cut(s)	1040, 1205
TseI	GCWGC	7 cut(s)	58, 415, 535, 622, 881, 957, 1059
Tsp45I	GTSAC	2 cut(s)	1040, 1205
TspDTI	ATGAA	8 cut(s)	257, 537, 702, 714, 759, 930, 1427, 1467
TspGWI	ACGGA	2 cut(s)	475, 1075
TspRI	CASTG	4 cut(s)	511, 1043, 1124, 1342
Vha464I	CTTAAG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	1500
XagI	CCTNNNNNAGG	1 cut(s)	1162
XapI	RAATTY	4 cut(s)	267, 1079, 1408, 1537
XceI	RCATGY	1 cut(s)	1422
XspI	CTAG	3 cut(s)	758, 909, 1389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.