Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011312

Physical Location & Seq

Genomic Coordinates Reverse (-)

6439871 .. 6442965

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G055100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGGATCATAAAGAAAAGTTATGTGCAGATGCCTGGGAAAATCCTTCCTCTGGGAATGATTTAACAGGCAAGATTTCCTCAGATTGTCCTCCTTTTGCCATTTTCAAACCACAGCTCCATCAACAGAAGTGGGAAGATCCCTCTATTTTAGATTATGGTGGCATCAGGATTGAACCATCCTTCCAGGAATTCAACCAGCCTTCTGAAACTCAAACATCCCTTCCTTGCAACTCCAATAATGATACAAAAATGGCAGATCGAGAAGATGGTCGGATGTGTGAGACACCCCAGGCCAATAAAAGTCAAGATTGGGATCCAAGAACAATGCTGAACAATCTCTCTTACTTGGAGCAAAAGATCCACCAGCTCCAGGACTTAGTACATTTGATTGTCGGCCGGAGAGGTCAAGTTCTAGGACGACCAGATGAACTTGTGGCTCAGCAACAGCAGCTCATAACCGCTGATCTGACTTCAATTATTGCTCAGTTGATCTCTACTGCAGGTAGTCTTCTACCATCCGTGAAGCATACACTTTCCACCACGACACCTTCTATTGGACAGTTTGGGCAGCTTGGTGGGTCGTTTGTTCCTTCTGGAGTAGGAACTGATGCTTCTGTGAAGCTGCAAAATAGTAATGGAAGCAAATTGGCTGATCAATCCAACCAGACTGATCTAATCAGTAATTATGGGACTGAGCAAAACTACAGCGTTGAAGAACACGAATCAAAAGACGAAGAAGATGCTGATGAAGGTGAGAACCTTCCACCTGGCAGCTATGAAATTTTACAGTTAGAGAAAGAAGAAATCCTTGCACCTCACACTCACTTCTGTGCAATATGTGGAAAGGGATTCAAGAGGGATGCAAATTTAAGGATGCACATGAGAGGTCATGGAGATGAGTACAAAACCCCAGCAGCACTTGCGAAGCCCAACAAAGAATCTAGCTCTGAACCAACACTTATCAAAAGGTATTCCTGCCCTTATGCTGGCTGCAAGCGGAACAAGGATCACAAAAAGTTTCAGCCATTGAAAACTATTTTATGTGTCAAAAATCACTACAAGAGAACCCACTGTGACAAAAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTCTCTGTTATCGCAGATCTTAAAACTCATGAGAAGCATTGTGGTAAGGACAAGTGGCTTTGTTCTTGTGGCACTACCTTCTCAAGGAAAGACAAGCTTTTTGGGCATATTGCCCTTTTTCAAGGCCACACTCCTGCCATACCCCTTGATGAAACGAAAGGAACTCAAGGGCCAGCCGACCATGGGGAAGGCAGTGAAGCATCAAACAGAGTTGGAAATATAAACTTCAGTTTTGGCTCCACTGCTTCTGGTGGGGGTGGTGTAGTTCAAAATCTCATGGATGTGAAAGAAAGTATCAACGATCCTACTAGTTATTTCTCACCATTGAATTTCGAAACATGTAATTTTGATGGGTTTCATGAGTTCCCTCGACCCCCATTTGAGGATTCAGAGAGTTCGTTCTCTTTTCTCATGCCGGGGTCTTGTAATTACACTCACAAAACTGGAGGCGAGCCAAATTCGAATAATCTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043620 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

530

Amino Acids

58.55

Weight (kDa)

5.81

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34370 AT1G34370 AT1G34370
fragaria_vesca	FvH4_2g12260 FvH4_2g12260
malus_domestica	MD05G1040600.v1.1 MD10G1046700.v1.1
prunus_persica	Prupe.8G055100_v2.0.a1 Prupe.8G055100_v2.0.a1
pyrus_communis	pycom05g03320
rosa_chinensis	RchiOBHm_Chr6g0272161
rosa_laevigata	RLG00000013695
rosa_multiflora	Rmu_sc0005748.1_g000013
rosa_roxburghii	Rroxscaffold_7G00196540
rosa_rugosa	Rorug06G0066600
rosa_samantha	Rh6AG183400 Rh6BG183700 Rh6CG184800 Rh6DG176500
rosa_wichuraiana	Rw6G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	491
AciI	CCGC	2 cut(s)	459, 997
AclWI	GGATC	7 cut(s)	12, 131, 308, 321, 352, 1014, 1409
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	5 cut(s)	188, 780, 865, 1441, 1570
AcuI	CTGAAG	1 cut(s)	1324
AfaI	GTAC	2 cut(s)	381, 902
AfiI	CCNNNNNNNGG	7 cut(s)	50, 370, 554, 986, 1197, 1296, 1495
AflIII	ACRYGT	1 cut(s)	1451
AhlI	ACTAGT	1 cut(s)	1421
AjnI	CCWGG	5 cut(s)	32, 183, 288, 369, 766
AleI	CACNNNNGTG	1 cut(s)	828
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	8 cut(s)	115, 367, 451, 571, 622, 774, 945, 1210
AluI	AGCT	8 cut(s)	115, 367, 451, 571, 622, 774, 945, 1210
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	7 cut(s)	12, 131, 308, 321, 352, 1014, 1409
AoxI	GGCC	4 cut(s)	291, 394, 1237, 1283
ApeKI	GCWGC	7 cut(s)	448, 568, 622, 771, 914, 990, 1092
ApoI	RAATTY	5 cut(s)	188, 780, 865, 1441, 1570
ArsI	GACNNNNNNTTYG	2 cut(s)	1196, 1228
AspS9I	GGNCC	1 cut(s)	1283
AsuC2I	CCSGG	1 cut(s)	1530
AsuHPI	GGTGA	2 cut(s)	764, 1425
AsuII	TTCGAA	2 cut(s)	1446, 1574
BamHI	GGATCC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	7 cut(s)	460, 580, 609, 783, 926, 977, 1104
BccI	CCATC	5 cut(s)	126, 184, 260, 523, 1457
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	5 cut(s)	34, 185, 290, 371, 768
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	1 cut(s)	1530
BcoDI	GTCTC	1 cut(s)	275
BcuI	ACTAGT	1 cut(s)	1421
BfaI	CTAG	3 cut(s)	413, 942, 1422
BfmI	CTRYAG	2 cut(s)	498, 703
BfuAI	ACCTGC	1 cut(s)	491
BglII	AGATCT	1 cut(s)	1129
BisI	GCNGC	7 cut(s)	449, 569, 623, 772, 915, 991, 1093
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	7 cut(s)	450, 570, 624, 773, 916, 992, 1094
Bme1390I	CCNGG	6 cut(s)	34, 185, 290, 371, 768, 1530
BmgT120I	GGNCC	1 cut(s)	1283
BmiI	GGNNCC	2 cut(s)	315, 1351
BmrFI	CCNGG	6 cut(s)	34, 185, 290, 371, 768, 1530
BmsI	GCATC	8 cut(s)	19, 171, 598, 730, 850, 864, 1088, 1322
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	3 cut(s)	353, 615, 1578
Bpu1102I	GCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	2 cut(s)	1446, 1574
BpuEI	CTTGAG	2 cut(s)	1180, 1263
BpuMI	CCSGG	1 cut(s)	1530
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	4 cut(s)	33, 288, 1294, 1529
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	7 cut(s)	50, 370, 554, 986, 1197, 1296, 1495
Bse1I	ACTGG	1 cut(s)	1561
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	5 cut(s)	34, 185, 290, 371, 768
BseDI	CCNNGG	4 cut(s)	33, 288, 1294, 1529
BseGI	GGATG	7 cut(s)	176, 215, 279, 515, 865, 879, 1399
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	7 cut(s)	50, 370, 554, 986, 1197, 1296, 1495
BseMII	CTCAG	4 cut(s)	93, 452, 497, 684
BseNI	ACTGG	1 cut(s)	1561
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	7 cut(s)	460, 580, 609, 783, 926, 977, 1104
BseYI	CCCAGC	1 cut(s)	910
BsgI	GTGCAG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	4 cut(s)	293, 396, 1239, 1285
BsiEI	CGRYCG	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	397, 1529
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	7 cut(s)	50, 370, 554, 986, 1197, 1296, 1495
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	703
BsnI	GGCC	4 cut(s)	293, 396, 1239, 1285
Bsp119I	TTCGAA	2 cut(s)	1446, 1574
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	1294
BspACI	CCGC	2 cut(s)	459, 997
BspANI	GGCC	4 cut(s)	293, 396, 1239, 1285
BspCNI	CTCAG	4 cut(s)	92, 451, 496, 685
BspHI	TCATGA	2 cut(s)	1141, 1471
BspLI	GGNNCC	2 cut(s)	315, 1351
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	7 cut(s)	12, 131, 308, 321, 352, 1014, 1409
BspT104I	TTCGAA	2 cut(s)	1446, 1574
BsrI	ACTGG	1 cut(s)	1561
BssECI	CCNNGG	4 cut(s)	33, 288, 1294, 1529
BssT1I	CCWWGG	1 cut(s)	1294
Bst2UI	CCWGG	5 cut(s)	34, 185, 290, 371, 768
Bst4CI	ACNGT	3 cut(s)	561, 789, 1073
BstAPI	GCANNNNNTGC	2 cut(s)	920, 1098
BstBI	TTCGAA	2 cut(s)	1446, 1574
BstC8I	GCNNGC	4 cut(s)	988, 995, 1287, 1565
BstDEI	CTNAG	5 cut(s)	79, 376, 438, 483, 693
BstDSI	CCRYGG	1 cut(s)	1294
BstENI	CCTNNNNNAGG	1 cut(s)	1195
BstF5I	GGATG	7 cut(s)	176, 215, 279, 515, 865, 879, 1399
BstMAI	GTCTC	1 cut(s)	275
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	4 cut(s)	448, 920, 1098, 1216
BstNI	CCWGG	5 cut(s)	34, 185, 290, 371, 768
BstNSI	RCATGY	1 cut(s)	1455
BstSCI	CCNGG	6 cut(s)	32, 183, 288, 369, 766, 1528
BstSFI	CTRYAG	2 cut(s)	498, 703
BstV1I	GCAGC	7 cut(s)	460, 580, 609, 783, 926, 977, 1104
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	4 cut(s)	136, 313, 357, 1129
BstYI	RGATCY	4 cut(s)	136, 313, 357, 1129
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	293, 396, 1239, 1285
BtgI	CCRYGG	1 cut(s)	1294
BtsCI	GGATG	7 cut(s)	176, 215, 279, 515, 865, 879, 1399
BtsI	GCAGTG	2 cut(s)	1312, 1353
BtsIMutI	CAGTG	3 cut(s)	1069, 1312, 1353
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	4 cut(s)	988, 995, 1287, 1565
CciI	TCATGA	2 cut(s)	1141, 1471
Cfr13I	GGNCC	1 cut(s)	1283
Csp6I	GTAC	2 cut(s)	380, 901
CspCI	CAANNNNNGTGG	2 cut(s)	110, 145
CviAII	CATG	8 cut(s)	880, 890, 1142, 1295, 1390, 1452, 1472, 1525
CviQI	GTAC	2 cut(s)	380, 901
DdeI	CTNAG	5 cut(s)	79, 376, 438, 483, 693
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	1294
Eco52I	CGGCCG	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	1324
EcoNI	CCTNNNNNAGG	1 cut(s)	1195
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	5 cut(s)	32, 183, 288, 369, 766
EcoT14I	CCWWGG	1 cut(s)	1294
ErhI	CCWWGG	1 cut(s)	1294
FaeI	CATG	8 cut(s)	883, 893, 1145, 1298, 1393, 1455, 1475, 1528
FalI	AAGNNNNNCTT	6 cut(s)	792, 824, 1072, 1104, 1194, 1226
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	8 cut(s)	879, 889, 1141, 1294, 1389, 1451, 1471, 1524
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	7 cut(s)	449, 569, 623, 772, 915, 991, 1093
FokI	GGATG	7 cut(s)	163, 202, 286, 502, 872, 886, 1406
Fsp4HI	GCNGC	7 cut(s)	449, 569, 623, 772, 915, 991, 1093
FspBI	CTAG	3 cut(s)	413, 942, 1422
GluI	GCNGC	7 cut(s)	449, 569, 623, 772, 915, 991, 1093
GsaI	CCCAGC	1 cut(s)	914
GsuI	CTGGAG	3 cut(s)	353, 615, 1578
HaeIII	GGCC	4 cut(s)	293, 396, 1239, 1285
HapII	CCGG	2 cut(s)	397, 1529
Hin1II	CATG	8 cut(s)	883, 893, 1145, 1298, 1393, 1455, 1475, 1528
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	4 cut(s)	722, 849, 938, 1499
HpaII	CCGG	2 cut(s)	397, 1529
HphI	GGTGA	2 cut(s)	764, 1425
Hpy188I	TCNGA	6 cut(s)	82, 205, 273, 468, 949, 1504
Hpy188III	TCNNGA	8 cut(s)	166, 260, 305, 594, 853, 1142, 1472, 1583
HpyCH4III	ACNGT	3 cut(s)	561, 789, 1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	448, 920, 1098, 1216
HpyF3I	CTNAG	5 cut(s)	79, 376, 438, 483, 693
Hsp92II	CATG	8 cut(s)	883, 893, 1145, 1298, 1393, 1455, 1475, 1528
Ksp22I	TGATCA	1 cut(s)	652
LmnI	GCTCC	4 cut(s)	120, 349, 372, 1355
Lsp1109I	GCAGC	7 cut(s)	460, 580, 609, 783, 926, 977, 1104
LweI	GCATC	8 cut(s)	19, 171, 598, 730, 850, 864, 1088, 1322
MaeI	CTAG	3 cut(s)	413, 942, 1422
MaeIII	GTNAC	2 cut(s)	1073, 1082
MboII	GAAGA	7 cut(s)	146, 275, 500, 725, 746, 749, 812
MflI	RGATCY	4 cut(s)	136, 313, 357, 1129
MmeI	TCCRAC	3 cut(s)	251, 684, 1306
MseI	TTAA	3 cut(s)	62, 869, 1134
MslI	CAYNNNNRTG	3 cut(s)	828, 894, 1394
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	397, 1529
MspR9I	CCNGG	6 cut(s)	34, 185, 290, 371, 768, 1530
MvaI	CCWGG	5 cut(s)	34, 185, 290, 371, 768
MwoI	GCNNNNNNNGC	4 cut(s)	448, 920, 1098, 1216
NciI	CCSGG	1 cut(s)	1530
NcoI	CCATGG	1 cut(s)	1294
NlaIII	CATG	8 cut(s)	883, 893, 1145, 1298, 1393, 1455, 1475, 1528
NlaIV	GGNNCC	2 cut(s)	315, 1351
NmuCI	GTSAC	1 cut(s)	1073
NspI	RCATGY	1 cut(s)	1455
NspV	TTCGAA	2 cut(s)	1446, 1574
OliI	CACNNNNGTG	1 cut(s)	828
PagI	TCATGA	2 cut(s)	1141, 1471
PciI	ACATGT	1 cut(s)	1451
PfeI	GAWTC	4 cut(s)	722, 849, 938, 1499
PfoI	TCCNGGA	2 cut(s)	183, 369
PkrI	GCNGC	7 cut(s)	450, 570, 624, 773, 916, 992, 1094
PscI	ACATGT	1 cut(s)	1451
Psp6I	CCWGG	5 cut(s)	32, 183, 288, 369, 766
PspFI	CCCAGC	1 cut(s)	910
PspGI	CCWGG	5 cut(s)	32, 183, 288, 369, 766
PspN4I	GGNNCC	2 cut(s)	315, 1351
PspPI	GGNCC	1 cut(s)	1283
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	4 cut(s)	136, 313, 357, 1129
RsaI	GTAC	2 cut(s)	381, 902
RsaNI	GTAC	2 cut(s)	380, 901
RseI	CAYNNNNRTG	3 cut(s)	828, 894, 1394
SaqAI	TTAA	3 cut(s)	62, 869, 1134
SatI	GCNGC	7 cut(s)	449, 569, 623, 772, 915, 991, 1093
Sau96I	GGNCC	1 cut(s)	1283
ScrFI	CCNGG	6 cut(s)	34, 185, 290, 371, 768, 1530
SfaNI	GCATC	8 cut(s)	19, 171, 598, 730, 850, 864, 1088, 1322
SfcI	CTRYAG	2 cut(s)	498, 703
SfuI	TTCGAA	2 cut(s)	1446, 1574
SmiMI	CAYNNNNRTG	3 cut(s)	828, 894, 1394
SmlI	CTYRAG	2 cut(s)	1195, 1278
SmoI	CTYRAG	2 cut(s)	1195, 1278
SpeI	ACTAGT	1 cut(s)	1421
SsiI	CCGC	2 cut(s)	459, 997
SspMI	CTAG	3 cut(s)	413, 942, 1422
StyD4I	CCNGG	6 cut(s)	32, 183, 288, 369, 766, 1528
StyI	CCWWGG	1 cut(s)	1294
TaaI	ACNGT	3 cut(s)	561, 789, 1073
TaqI	TCGA	4 cut(s)	259, 1446, 1483, 1574
TatI	WGTACW	2 cut(s)	379, 900
TfiI	GAWTC	4 cut(s)	722, 849, 938, 1499
Tru1I	TTAA	3 cut(s)	62, 869, 1134
Tru9I	TTAA	3 cut(s)	62, 869, 1134
TscAI	CASTG	3 cut(s)	1076, 1312, 1360
TseFI	GTSAC	1 cut(s)	1073
TseI	GCWGC	7 cut(s)	448, 568, 622, 771, 914, 990, 1092
Tsp45I	GTSAC	1 cut(s)	1073
TspDTI	ATGAA	5 cut(s)	441, 762, 792, 1278, 1460
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	3 cut(s)	1076, 1312, 1360
XagI	CCTNNNNNAGG	1 cut(s)	1195
XapI	RAATTY	5 cut(s)	188, 780, 865, 1441, 1570
XceI	RCATGY	1 cut(s)	1455
XspI	CTAG	3 cut(s)	413, 942, 1422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.