RchiOBHm_Chr6g0272161

Protein SENSITIVE TO PROTON RHIZOTOXICITY

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
32308905 .. 32311747
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24415

Sequence Viewer

Length: 1473 bp
ATGGATCATAAAGATAAGGTTTGTGCAGACCCCTGGGCAAAGGATTTAAGAAATAAGGCTTGCTCGGATCGGCTGCCTTTTGCCAATTTCGGTTCGCACCAGCATCAAAACAAGTGGGAAGATCCCTCTATTTTAGATTATGGCATGAGGATTGAACCGTCCTTCCAGAAACTCAGCCAGCCGTCCGAGGATCAAACTTCACTTCCTTGCAACTCCAACAATGAGAAAACAATTGCAGATGGAGAAGATGTTCAGATGAATGATATACTCCATGCCAGTAAAATTCAAGATTGGGATCCAAGAACAATGTTGACCAATCTTTCGTTCCTGGAACAAAAGATCCATCAGCTCCAGGATTTAGTGCATTTGATTGTTGGCCGGAGAGGCCAAGTTCAAGGACGACCGGATGAGCTGGTGGCTCAACAACAGCAGCTCATAACTGCTGATCTTACTTCAATCATAGCTCAATTGATCTCTACGGCAGGAACTGAAGCTCCGGTTAAGTTGCAAATTAATAGCGGAAGCAAGTTATCTGAGCAGCCCAACCAAACTGACCTGATCACTAACTATGGGACTGAGCAAAGCTACAACATTGAAGAACATGAATCAAAAGATGAAGAGGATGCTGATGATGGCGAGAACCTTCCGCCTGGTACTTATGAAATCTTACAGCTAGAGAAAGAAGAAATCCTTGCACCACACACTCATTTCTGTGCTATATGTGGAAAGGGATTCAAGAGGGATGCAAACTTAAGGATGCACATGAGAGGTCATGGAGACGAGTACAAAACCCCAGCTGCACTTGCAAAGCCCAACAAAGAATCTAGTTCTGAACCAACACTCATCAAAAGGTATTCATGCCCTTATGCTGGCTGCAAGAGGAACAAGGATCACAAGAAGTTTCAGCCTTTGAAGACCATTTTATGTGTCAAAAATCACTACAAGAGAACCCACTGTGACAAAAGTTACACTTGCAGCAGGTGCAACACCAAGAAGTTCTCCGTTATTGCAGATCTCAAAACTCATGAGAAGCACTGTGGTAAGGACAAGTGGCTTTGTTCTTGTGGCACAACCTTCTCCAGGAAAGACAAGCTTTTTGGACATATTGCGCTGTTTCAAGGTCACACTCCTGCCATTCCCATGGACGAAACAAAAACAACTGTTGGGCCATCTGAACATGGGGAAGGTAGTGAAGCACCAAACAGAGTTGGTAGCATCAACTTCAATTTTGGCTCCATTGTGCCAAGTGGCAGTGGTTTAGTTCAGAATATTATGGATGTGAAAGAAAGTGTCGACGATCCTACTAGTTATTTCTCGCCGTTGAATTTTGATACGTGTAATTTTGATGGGTTTCATGAGTTCCCTCGACCCCCATTTGAAGATTCAGAGAGTTCATTCTCTTTTCTTATGCCAGGGTCCTGTAATTACACTCAGAAAACTGGTGGTGAGTCAAATTCCAAAAAAGTTGAGTGA

Protein Analysis

490

Amino Acids

55.01

Weight (kDa)

5.94

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_STOP2_3rd PF23115 285 - 319 2.4e-19 STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C PF23118 350 - 379 9e-23 STOP2-like, C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011312)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 969
Acc36I ACCTGC 1 cut(s) 969
AccI GTMKAC 1 cut(s) 1293
AciI CCGC 2 cut(s) 519, 647
AclWI GGATC 9 cut(s) 12, 75, 116, 198, 290, 303, 334, 897, 1292
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 3 cut(s) 282, 1324, 1453
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 2 cut(s) 655, 785
AfiI CCNNNNNNNGG 2 cut(s) 869, 1080
AflII CTTAAG 1 cut(s) 751
AflIII ACRYGT 1 cut(s) 1334
AhlI ACTAGT 1 cut(s) 1304
AjnI CCWGG 6 cut(s) 32, 327, 351, 649, 1079, 1411
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AloI GAACNNNNNNTCC 8 cut(s) 147, 179, 234, 266, 324, 356, 478, 510
AluBI AGCT 9 cut(s) 349, 412, 433, 464, 494, 585, 673, 797, 1093
AluI AGCT 9 cut(s) 349, 412, 433, 464, 494, 585, 673, 797, 1093
Alw26I GTCTC 1 cut(s) 771
AlwI GGATC 9 cut(s) 12, 75, 116, 198, 290, 303, 334, 897, 1292
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 376, 385, 1166
ApeKI GCWGC 6 cut(s) 73, 430, 538, 797, 873, 975
ApoI RAATTY 3 cut(s) 282, 1324, 1453
ArsI GACNNNNNNTTYG 4 cut(s) 304, 336, 1079, 1111
AseI ATTAAT 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 1111
AspS9I GGNCC 2 cut(s) 1166, 1416
AsuHPI GGTGA 1 cut(s) 1457
AvaII GGWCC 1 cut(s) 1416
BamHI GGATCC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 920
BbvI GCAGC 6 cut(s) 60, 442, 550, 784, 860, 987
BccI CCATC 5 cut(s) 233, 351, 626, 1177, 1340
BceAI ACGGC 3 cut(s) 166, 495, 1303
BciT130I CCWGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 771
BcuI ACTAGT 1 cut(s) 1304
BfaI CTAG 3 cut(s) 674, 825, 1305
BfrI CTTAAG 1 cut(s) 751
BfuAI ACCTGC 1 cut(s) 969
BglI GCCNNNNNGGC 1 cut(s) 384
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 6 cut(s) 74, 431, 539, 798, 874, 976
BlsI GCNGC 6 cut(s) 75, 432, 540, 799, 875, 977
Bme1390I CCNGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
Bme18I GGWCC 1 cut(s) 1416
BmgT120I GGNCC 2 cut(s) 1166, 1416
BmiI GGNNCC 3 cut(s) 297, 1234, 1417
BmrFI CCNGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
BmsI GCATC 5 cut(s) 112, 613, 733, 747, 1224
BpiI GAAGAC 1 cut(s) 920
BpmI CTGGAG 2 cut(s) 335, 1063
BsaAI YACGTR 1 cut(s) 1335
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 5 cut(s) 32, 33, 186, 1140, 1412
BsaWI WCCGGW 2 cut(s) 403, 496
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 478, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 869, 1080
Bse1I ACTGG 2 cut(s) 276, 1444
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
BseDI CCNNGG 5 cut(s) 32, 33, 186, 1140, 1412
BseGI GGATG 5 cut(s) 412, 628, 748, 762, 1282
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 869, 1080
BseMII CTCAG 4 cut(s) 187, 525, 567, 1445
BseNI ACTGG 2 cut(s) 276, 1444
BseXI GCAGC 6 cut(s) 60, 442, 550, 784, 860, 987
BseYI CCCAGC 1 cut(s) 793
BsgI GTGCAG 2 cut(s) 45, 783
Bsh1285I CGRYCG 1 cut(s) 404
BshFI GGCC 3 cut(s) 378, 387, 1168
BsiEI CGRYCG 1 cut(s) 404
BsiSI CCGG 3 cut(s) 379, 404, 497
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 2 cut(s) 869, 1080
BsmAI GTCTC 1 cut(s) 771
BsmBI CGTCTC 1 cut(s) 771
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 3 cut(s) 378, 387, 1168
Bsp19I CCATGG 1 cut(s) 1140
BspACI CCGC 2 cut(s) 519, 647
BspANI GGCC 3 cut(s) 378, 387, 1168
BspCNI CTCAG 4 cut(s) 186, 526, 568, 1444
BspHI TCATGA 2 cut(s) 1024, 1354
BspLI GGNNCC 3 cut(s) 297, 1234, 1417
BspMI ACCTGC 1 cut(s) 969
BspPI GGATC 9 cut(s) 12, 75, 116, 198, 290, 303, 334, 897, 1292
BspTI CTTAAG 1 cut(s) 751
BsrI ACTGG 2 cut(s) 276, 1444
BssECI CCNNGG 5 cut(s) 32, 33, 186, 1140, 1412
BssT1I CCWWGG 1 cut(s) 1140
Bst2UI CCWGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
Bst4CI ACNGT 4 cut(s) 159, 956, 1037, 1162
Bst6I CTCTTC 1 cut(s) 612
BstAFI CTTAAG 1 cut(s) 751
BstAPI GCANNNNNTGC 1 cut(s) 981
BstBAI YACGTR 1 cut(s) 1335
BstC8I GCNNGC 3 cut(s) 61, 179, 871
BstDEI CTNAG 4 cut(s) 173, 534, 576, 1431
BstDSI CCRYGG 1 cut(s) 1140
BstENI CCTNNNNNAGG 1 cut(s) 1078
BstF5I GGATG 5 cut(s) 412, 628, 748, 762, 1282
BstHHI GCGC 1 cut(s) 1111
BstMAI GTCTC 1 cut(s) 771
BstMCI CGRYCG 1 cut(s) 404
BstMWI GCNNNNNNNGC 3 cut(s) 384, 803, 981
BstNI CCWGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
BstSCI CCNGG 6 cut(s) 32, 327, 351, 649, 1079, 1411
BstV1I GCAGC 6 cut(s) 60, 442, 550, 784, 860, 987
BstV2I GAAGAC 1 cut(s) 920
BstX2I RGATCY 4 cut(s) 121, 295, 339, 1012
BstXI CCANNNNNNTGG 1 cut(s) 1141
BstYI RGATCY 4 cut(s) 121, 295, 339, 1012
BsuRI GGCC 3 cut(s) 378, 387, 1168
BtgI CCRYGG 1 cut(s) 1140
BtsCI GGATG 5 cut(s) 412, 628, 748, 762, 1282
BtsI GCAGTG 1 cut(s) 1258
BtsIMutI CAGTG 3 cut(s) 952, 1033, 1258
BveI ACCTGC 1 cut(s) 969
Cac8I GCNNGC 3 cut(s) 61, 179, 871
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 2 cut(s) 1024, 1354
CfoI GCGC 1 cut(s) 1111
Cfr13I GGNCC 2 cut(s) 1166, 1416
Csp6I GTAC 2 cut(s) 654, 784
CspCI CAANNNNNGTGG 2 cut(s) 95, 130
CviQI GTAC 2 cut(s) 654, 784
DdeI CTNAG 4 cut(s) 173, 534, 576, 1431
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 1140
Eco47I GGWCC 1 cut(s) 1416
Eco57I CTGAAG 1 cut(s) 510
EcoNI CCTNNNNNAGG 1 cut(s) 1078
EcoO109I RGGNCCY 1 cut(s) 1416
EcoRII CCWGG 6 cut(s) 32, 327, 351, 649, 1079, 1411
EcoT14I CCWWGG 1 cut(s) 1140
ErhI CCWWGG 1 cut(s) 1140
Esp3I CGTCTC 1 cut(s) 771
FalI AAGNNNNNCTT 6 cut(s) 675, 707, 955, 987, 1077, 1109
FaqI GGGAC 1 cut(s) 586
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 1 cut(s) 1293
Fnu4HI GCNGC 6 cut(s) 74, 431, 539, 798, 874, 976
FokI GGATG 5 cut(s) 419, 635, 755, 769, 1289
Fsp4HI GCNGC 6 cut(s) 74, 431, 539, 798, 874, 976
FspBI CTAG 3 cut(s) 674, 825, 1305
GlaI GCGC 1 cut(s) 1110
GluI GCNGC 6 cut(s) 74, 431, 539, 798, 874, 976
GsaI CCCAGC 1 cut(s) 797
GsuI CTGGAG 2 cut(s) 335, 1063
HaeIII GGCC 3 cut(s) 378, 387, 1168
HapII CCGG 3 cut(s) 379, 404, 497
HhaI GCGC 1 cut(s) 1111
Hin6I GCGC 1 cut(s) 1109
HinP1I GCGC 1 cut(s) 1109
HincII GTYRAC 2 cut(s) 312, 1294
HindII GTYRAC 2 cut(s) 312, 1294
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 5 cut(s) 605, 732, 821, 1382, 1448
HpaII CCGG 3 cut(s) 379, 404, 497
HphI GGTGA 1 cut(s) 1457
Hpy166II GTNNAC 2 cut(s) 312, 1294
Hpy188I TCNGA 9 cut(s) 67, 187, 255, 535, 832, 1174, 1266, 1387, 1434
Hpy188III TCNNGA 5 cut(s) 166, 287, 736, 1025, 1355
Hpy8I GTNNAC 2 cut(s) 312, 1294
Hpy99I CGWCG 1 cut(s) 1298
HpyAV CCTTC 4 cut(s) 172, 653, 1084, 1178
HpyCH4III ACNGT 4 cut(s) 159, 956, 1037, 1162
HpyCH4IV ACGT 1 cut(s) 1334
HpyF10VI GCNNNNNNNGC 3 cut(s) 384, 803, 981
HpyF3I CTNAG 4 cut(s) 173, 534, 576, 1431
HpySE526I ACGT 1 cut(s) 1334
HspAI GCGC 1 cut(s) 1109
Ksp22I TGATCA 1 cut(s) 558
LmnI GCTCC 3 cut(s) 354, 499, 1238
Lsp1109I GCAGC 6 cut(s) 60, 442, 550, 784, 860, 987
LweI GCATC 5 cut(s) 112, 613, 733, 747, 1224
MaeI CTAG 3 cut(s) 674, 825, 1305
MaeII ACGT 1 cut(s) 1334
MaeIII GTNAC 3 cut(s) 956, 965, 1121
MboII GAAGA 7 cut(s) 131, 257, 608, 629, 695, 925, 1391
MfeI CAATTG 2 cut(s) 231, 467
MflI RGATCY 4 cut(s) 121, 295, 339, 1012
MlyI GAGTC 1 cut(s) 1457
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 9 cut(s) 136, 141, 181, 377, 613, 732, 761, 873, 1374
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 4 cut(s) 47, 501, 513, 752
MslI CAYNNNNRTG 2 cut(s) 711, 1139
MspA1I CMGCKG 1 cut(s) 797
MspCI CTTAAG 1 cut(s) 751
MspI CCGG 3 cut(s) 379, 404, 497
MspR9I CCNGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
MunI CAATTG 2 cut(s) 231, 467
MvaI CCWGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
MwoI GCNNNNNNNGC 3 cut(s) 384, 803, 981
NcoI CCATGG 1 cut(s) 1140
NlaIV GGNNCC 3 cut(s) 297, 1234, 1417
NmuCI GTSAC 2 cut(s) 956, 1121
PagI TCATGA 2 cut(s) 1024, 1354
PaqCI CACCTGC 1 cut(s) 969
PasI CCCWGGG 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 4 cut(s) 605, 732, 821, 1382
PfoI TCCNGGA 3 cut(s) 327, 351, 1079
PkrI GCNGC 6 cut(s) 75, 432, 540, 799, 875, 977
PleI GAGTC 1 cut(s) 1456
PpsI GAGTC 1 cut(s) 1456
Ppu21I YACGTR 1 cut(s) 1335
PpuMI RGGWCCY 1 cut(s) 1416
PshBI ATTAAT 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 1416
Psp6I CCWGG 6 cut(s) 32, 327, 351, 649, 1079, 1411
PspFI CCCAGC 1 cut(s) 793
PspGI CCWGG 6 cut(s) 32, 327, 351, 649, 1079, 1411
PspN4I GGNNCC 3 cut(s) 297, 1234, 1417
PspPI GGNCC 2 cut(s) 1166, 1416
PspPPI RGGWCCY 1 cut(s) 1416
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 4 cut(s) 121, 295, 339, 1012
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 2 cut(s) 655, 785
RsaNI GTAC 2 cut(s) 654, 784
RseI CAYNNNNRTG 2 cut(s) 711, 1139
SalI GTCGAC 1 cut(s) 1292
SaqAI TTAA 4 cut(s) 47, 501, 513, 752
SatI GCNGC 6 cut(s) 74, 431, 539, 798, 874, 976
Sau96I GGNCC 2 cut(s) 1166, 1416
SchI GAGTC 1 cut(s) 1457
ScrFI CCNGG 6 cut(s) 34, 329, 353, 651, 1081, 1413
SfaNI GCATC 5 cut(s) 112, 613, 733, 747, 1224
SfiI GGCCNNNNNGGCC 1 cut(s) 384
SinI GGWCC 1 cut(s) 1416
SmiMI CAYNNNNRTG 2 cut(s) 711, 1139
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
SpeI ACTAGT 1 cut(s) 1304
SsiI CCGC 2 cut(s) 519, 647
SspI AATATT 1 cut(s) 1270
SspMI CTAG 3 cut(s) 674, 825, 1305
StyD4I CCNGG 6 cut(s) 32, 327, 351, 649, 1079, 1411
StyI CCWWGG 1 cut(s) 1140
TaaI ACNGT 4 cut(s) 159, 956, 1037, 1162
TaiI ACGT 1 cut(s) 1337
TaqI TCGA 2 cut(s) 1293, 1366
TatI WGTACW 1 cut(s) 783
TfiI GAWTC 4 cut(s) 605, 732, 821, 1382
Tru1I TTAA 4 cut(s) 47, 501, 513, 752
Tru9I TTAA 4 cut(s) 47, 501, 513, 752
TscAI CASTG 3 cut(s) 959, 1040, 1258
TseFI GTSAC 2 cut(s) 956, 1121
TseI GCWGC 6 cut(s) 73, 430, 538, 797, 873, 975
Tsp45I GTSAC 2 cut(s) 956, 1121
TspDTI ATGAA 7 cut(s) 272, 618, 630, 675, 846, 1343, 1383
TspGWI ACGGA 1 cut(s) 991
TspRI CASTG 3 cut(s) 959, 1040, 1258
Vha464I CTTAAG 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 1416
VspI ATTAAT 1 cut(s) 513
XagI CCTNNNNNAGG 1 cut(s) 1078
XapI RAATTY 3 cut(s) 282, 1324, 1453
XmiI GTMKAC 1 cut(s) 1293
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 3 cut(s) 674, 825, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.