Rroxscaffold_7G00196540

Protein SENSITIVE TO PROTON RHIZOTOXICITY

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
39559118 .. 39561489
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196540.1

Sequence Viewer

Length: 1572 bp
ATGGATCATAAGGATAAGGTTTGTGTAGACCCCTGGGCAAAGGATTTAAGAATTAAGACTTGCTCGGATCGGCCGCCTTTTGCCAATTTCGGTTCACACCAGCATCAAAACAAGTGGGAAGATCCCTCTATTTTAGATTATGGCATGAGGATTGAACCCTCCTTCCAGAAACTCAGCCAGCCGTCGGAGGATCAAACTTCACTTCCTTGCAACTCCAACAATGAGAAAACAATTGCAGATGGAGAAGATGTTCAGATGAATGAGATACTCCATGCTAGTAAAATTCAAGATTGGGATCCTAGAACAATGTTGACCAATCTTTCGTTCCTGGAACAAAAGATCCATCAGCTCCAGGATTTAGTGCATTTGATTGTTGGCCGGAGAGGACAAGTTGTAGGACGACCGGATGAGCTGGTGGCTCAACAACAGCAGCTCATAACTGCTGATCTTACTTCAATCATAGCTCAATTGATCTCTACGGCAGGTAGTCTTCTTCCATCCGTTAAGCATACGCTTTCCACTGCAACATCTTCTGTGGGACAGTTTGGGCAGCTTGGTGGTTCATTTGTTTCTTCTGGAGCAGGAACTGAAGCTCCGGTTAAGTTGCAAATTAATAGCGGAAGCAAGTTATCTGAGCAGCCCAACCAAACTGACCTGATCACTAACTATGGGACTGAGCAAAGCTACAACATTGAAGAACATGAATCAAAAGATGAAGAGGATGCTGATGATGGCGAGAACCTTCCGCCTGGTACTTATGAAATCTTACAGCTAGAGAAAGAAGAAATCCTTGCACCACACACTCATTTCTGTGCTATATGTGGAAAGGGATTCAAGAGGGATGCAAACTTGAGGATGCACATGAGAGGTCATGGAGATGAGTACAAAACCCCAGCTGCACTTGCAAAGCCCAACAAAGAATCTAGTTCTGAACCAACACTCATCAAAAGGTATTCATGCCCTTATGCTGGCTGCAAGCGGAACAAGGATCACAAGAAGTTTCAGCCTTTGAAGACCATTTTATGTGTCAAGAATCACTACAAGAGAACCCACTGTGACAAAAGTTACACTTGCAGCAGGTGCAACACCAAGAAATTCTCCGTTATTGCAGATCTCAAAACTCATGAGAAGCACTGTGGTAAGGACAAGTGGCTTTGTTCTTGTGGCACAACCTTCTCCAGGAAAGACAAGCTTTTTGGACATATTGCGCTGTTTCAAGGTCACACTCCTGCCATTCCCCTGGACGAAACAAAAACAACTGTTGGGCCATCTGAACATGGGGAAGGTAGAGAAGCACCAAACAGAGTTGGTAGCATCAACTTCAATTTTGGCTCCACTGTGCCAAGTGGCAGTGGTTTAGTTCAGAATATTATGGATGTGAAAGAAAGTGTCGACGATCCTACTAGTTATTTCTCGCCATTGAATTTTGATACGTGTAATTTTGATGGGTTTCATGAGTTCCCTCGACCCCCATTTGAAGATTCAGAGAGTTCATTCTCTTTTCTTATGCCAGGGTCCTGTAATTACACTCAGAAAACTGGTGGCGAGTCAAATTCCAAAAAAATTGAGTGA

Protein Analysis

523

Amino Acids

58.23

Weight (kDa)

6.1

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_STOP2_3rd PF23115 318 - 352 2.6e-19 STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C PF23118 383 - 412 9.8e-23 STOP2-like, C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011312)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1068
Acc36I ACCTGC 2 cut(s) 473, 1068
AccI GTMKAC 2 cut(s) 27, 1392
AciI CCGC 4 cut(s) 74, 618, 746, 979
AclWI GGATC 9 cut(s) 12, 75, 116, 198, 290, 303, 334, 996, 1391
AcoI YGGCCR 2 cut(s) 71, 376
AcsI RAATTY 4 cut(s) 282, 1094, 1423, 1552
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 2 cut(s) 754, 884
AfiI CCNNNNNNNGG 3 cut(s) 184, 968, 1179
AflIII ACRYGT 1 cut(s) 1433
AhlI ACTAGT 1 cut(s) 1403
AjnI CCWGG 7 cut(s) 32, 327, 351, 748, 1178, 1239, 1510
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AloI GAACNNNNNNTCC 8 cut(s) 147, 179, 234, 266, 324, 356, 577, 609
AlwI GGATC 9 cut(s) 12, 75, 116, 198, 290, 303, 334, 996, 1391
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 3 cut(s) 71, 376, 1265
ApeKI GCWGC 6 cut(s) 430, 550, 637, 896, 972, 1074
ApoI RAATTY 4 cut(s) 282, 1094, 1423, 1552
ArsI GACNNNNNNTTYG 4 cut(s) 304, 336, 1178, 1210
AseI ATTAAT 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 1210
AspS9I GGNCC 2 cut(s) 1265, 1515
AvaII GGWCC 1 cut(s) 1515
BamHI GGATCC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 482, 1019
BbvI GCAGC 6 cut(s) 442, 562, 649, 883, 959, 1086
BccI CCATC 6 cut(s) 233, 351, 505, 725, 1276, 1439
BceAI ACGGC 2 cut(s) 166, 495
BciT130I CCWGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
BclI TGATCA 1 cut(s) 657
BcuI ACTAGT 1 cut(s) 1403
BfaI CTAG 5 cut(s) 276, 300, 773, 924, 1404
BfuAI ACCTGC 2 cut(s) 473, 1068
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 7 cut(s) 74, 431, 551, 638, 897, 973, 1075
BlsI GCNGC 7 cut(s) 75, 432, 552, 639, 898, 974, 1076
Bme1390I CCNGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
Bme18I GGWCC 1 cut(s) 1515
BmgT120I GGNCC 2 cut(s) 1265, 1515
BmiI GGNNCC 3 cut(s) 297, 1333, 1516
BmrFI CCNGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
BmsI GCATC 5 cut(s) 112, 712, 832, 846, 1323
BpiI GAAGAC 2 cut(s) 482, 1019
BpmI CTGGAG 3 cut(s) 335, 597, 1162
BpuEI CTTGAG 1 cut(s) 871
BsaAI YACGTR 1 cut(s) 1434
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 32, 33, 1239, 1511
BsaWI WCCGGW 2 cut(s) 403, 595
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 968, 1179
Bse1I ACTGG 1 cut(s) 1543
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
BseDI CCNNGG 4 cut(s) 32, 33, 1239, 1511
BseGI GGATG 6 cut(s) 412, 497, 727, 847, 861, 1381
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 3 cut(s) 184, 968, 1179
BseMII CTCAG 4 cut(s) 187, 624, 666, 1544
BseNI ACTGG 1 cut(s) 1543
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 6 cut(s) 442, 562, 649, 883, 959, 1086
BseYI CCCAGC 1 cut(s) 892
BsgI GTGCAG 1 cut(s) 882
Bsh1285I CGRYCG 2 cut(s) 74, 404
BshFI GGCC 3 cut(s) 73, 378, 1267
BsiEI CGRYCG 2 cut(s) 74, 404
BsiSI CCGG 3 cut(s) 379, 404, 596
BslFI GGGAC 2 cut(s) 552, 685
BslI CCNNNNNNNGG 3 cut(s) 184, 968, 1179
BsmFI GGGAC 2 cut(s) 552, 685
BsnI GGCC 3 cut(s) 73, 378, 1267
BspACI CCGC 4 cut(s) 74, 618, 746, 979
BspANI GGCC 3 cut(s) 73, 378, 1267
BspCNI CTCAG 4 cut(s) 186, 625, 667, 1543
BspHI TCATGA 2 cut(s) 1123, 1453
BspLI GGNNCC 3 cut(s) 297, 1333, 1516
BspMI ACCTGC 2 cut(s) 473, 1068
BspPI GGATC 9 cut(s) 12, 75, 116, 198, 290, 303, 334, 996, 1391
BsrI ACTGG 1 cut(s) 1543
BssECI CCNNGG 4 cut(s) 32, 33, 1239, 1511
Bst2UI CCWGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
Bst4CI ACNGT 5 cut(s) 543, 1055, 1136, 1261, 1339
Bst6I CTCTTC 1 cut(s) 711
BstAPI GCANNNNNTGC 1 cut(s) 1080
BstBAI YACGTR 1 cut(s) 1434
BstC8I GCNNGC 3 cut(s) 179, 970, 977
BstDEI CTNAG 4 cut(s) 173, 633, 675, 1530
BstENI CCTNNNNNAGG 1 cut(s) 1177
BstF5I GGATG 6 cut(s) 412, 497, 727, 847, 861, 1381
BstHHI GCGC 1 cut(s) 1210
BstMCI CGRYCG 2 cut(s) 74, 404
BstMWI GCNNNNNNNGC 2 cut(s) 902, 1080
BstNI CCWGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
BstSCI CCNGG 7 cut(s) 32, 327, 351, 748, 1178, 1239, 1510
BstV1I GCAGC 6 cut(s) 442, 562, 649, 883, 959, 1086
BstV2I GAAGAC 2 cut(s) 482, 1019
BstX2I RGATCY 4 cut(s) 121, 295, 339, 1111
BstXI CCANNNNNNTGG 1 cut(s) 1240
BstYI RGATCY 4 cut(s) 121, 295, 339, 1111
BstZI CGGCCG 1 cut(s) 71
BsuRI GGCC 3 cut(s) 73, 378, 1267
BtsCI GGATG 6 cut(s) 412, 497, 727, 847, 861, 1381
BtsI GCAGTG 2 cut(s) 519, 1357
BtsIMutI CAGTG 5 cut(s) 519, 1051, 1132, 1335, 1357
BveI ACCTGC 2 cut(s) 473, 1068
Cac8I GCNNGC 3 cut(s) 179, 970, 977
CaiI CAGNNNCTG 1 cut(s) 587
CciI TCATGA 2 cut(s) 1123, 1453
CfoI GCGC 1 cut(s) 1210
Cfr13I GGNCC 2 cut(s) 1265, 1515
Csp6I GTAC 2 cut(s) 753, 883
CspCI CAANNNNNGTGG 2 cut(s) 95, 130
CviAII CATG 9 cut(s) 145, 272, 701, 862, 872, 957, 1124, 1277, 1454
CviQI GTAC 2 cut(s) 753, 883
DdeI CTNAG 4 cut(s) 173, 633, 675, 1530
EaeI YGGCCR 2 cut(s) 71, 376
EagI CGGCCG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
EciI GGCGGA 1 cut(s) 735
EclXI CGGCCG 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 1515
Eco52I CGGCCG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 1177
EcoO109I RGGNCCY 1 cut(s) 1515
EcoRII CCWGG 7 cut(s) 32, 327, 351, 748, 1178, 1239, 1510
FaeI CATG 9 cut(s) 148, 275, 704, 865, 875, 960, 1127, 1280, 1457
FalI AAGNNNNNCTT 6 cut(s) 774, 806, 1054, 1086, 1176, 1208
FaqI GGGAC 2 cut(s) 552, 685
FatI CATG 9 cut(s) 144, 271, 700, 861, 871, 956, 1123, 1276, 1453
FbaI TGATCA 1 cut(s) 657
FblI GTMKAC 2 cut(s) 27, 1392
Fnu4HI GCNGC 7 cut(s) 74, 431, 551, 638, 897, 973, 1075
FokI GGATG 6 cut(s) 419, 484, 734, 854, 868, 1388
Fsp4HI GCNGC 7 cut(s) 74, 431, 551, 638, 897, 973, 1075
FspBI CTAG 5 cut(s) 276, 300, 773, 924, 1404
GlaI GCGC 1 cut(s) 1209
GluI GCNGC 7 cut(s) 74, 431, 551, 638, 897, 973, 1075
GsaI CCCAGC 1 cut(s) 896
GsuI CTGGAG 3 cut(s) 335, 597, 1162
HaeIII GGCC 3 cut(s) 73, 378, 1267
HapII CCGG 3 cut(s) 379, 404, 596
HhaI GCGC 1 cut(s) 1210
Hin1II CATG 9 cut(s) 148, 275, 704, 865, 875, 960, 1127, 1280, 1457
Hin6I GCGC 1 cut(s) 1208
HinP1I GCGC 1 cut(s) 1208
HincII GTYRAC 2 cut(s) 312, 1393
HindII GTYRAC 2 cut(s) 312, 1393
HindIII AAGCTT 1 cut(s) 1190
HinfI GANTC 6 cut(s) 704, 831, 920, 1033, 1481, 1547
HpaII CCGG 3 cut(s) 379, 404, 596
Hpy166II GTNNAC 4 cut(s) 28, 95, 312, 1393
Hpy188I TCNGA 9 cut(s) 67, 187, 255, 634, 931, 1273, 1365, 1486, 1533
Hpy188III TCNNGA 7 cut(s) 166, 287, 576, 835, 1030, 1124, 1454
Hpy8I GTNNAC 4 cut(s) 28, 95, 312, 1393
Hpy99I CGWCG 2 cut(s) 187, 1397
HpyAV CCTTC 4 cut(s) 172, 752, 1183, 1277
HpyCH4III ACNGT 5 cut(s) 543, 1055, 1136, 1261, 1339
HpyCH4IV ACGT 1 cut(s) 1433
HpyF10VI GCNNNNNNNGC 2 cut(s) 902, 1080
HpyF3I CTNAG 4 cut(s) 173, 633, 675, 1530
HpySE526I ACGT 1 cut(s) 1433
Hsp92II CATG 9 cut(s) 148, 275, 704, 865, 875, 960, 1127, 1280, 1457
HspAI GCGC 1 cut(s) 1208
Ksp22I TGATCA 1 cut(s) 657
LmnI GCTCC 4 cut(s) 354, 578, 598, 1337
Lsp1109I GCAGC 6 cut(s) 442, 562, 649, 883, 959, 1086
LweI GCATC 5 cut(s) 112, 712, 832, 846, 1323
MaeI CTAG 5 cut(s) 276, 300, 773, 924, 1404
MaeII ACGT 1 cut(s) 1433
MaeIII GTNAC 3 cut(s) 1055, 1064, 1220
MfeI CAATTG 2 cut(s) 231, 467
MflI RGATCY 4 cut(s) 121, 295, 339, 1111
MlyI GAGTC 1 cut(s) 1556
MmeI TCCRAC 2 cut(s) 165, 240
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 5 cut(s) 47, 54, 504, 600, 612
MslI CAYNNNNRTG 2 cut(s) 810, 876
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 3 cut(s) 379, 404, 596
MspR9I CCNGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
MunI CAATTG 2 cut(s) 231, 467
MvaI CCWGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
MwoI GCNNNNNNNGC 2 cut(s) 902, 1080
NlaIII CATG 9 cut(s) 148, 275, 704, 865, 875, 960, 1127, 1280, 1457
NlaIV GGNNCC 3 cut(s) 297, 1333, 1516
NmuCI GTSAC 2 cut(s) 1055, 1220
PagI TCATGA 2 cut(s) 1123, 1453
PaqCI CACCTGC 1 cut(s) 1068
PasI CCCWGGG 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 5 cut(s) 704, 831, 920, 1033, 1481
PfoI TCCNGGA 3 cut(s) 327, 351, 1178
PkrI GCNGC 7 cut(s) 75, 432, 552, 639, 898, 974, 1076
PleI GAGTC 1 cut(s) 1555
PpsI GAGTC 1 cut(s) 1555
Ppu21I YACGTR 1 cut(s) 1434
PpuMI RGGWCCY 1 cut(s) 1515
PshBI ATTAAT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 1515
Psp6I CCWGG 7 cut(s) 32, 327, 351, 748, 1178, 1239, 1510
PspFI CCCAGC 1 cut(s) 892
PspGI CCWGG 7 cut(s) 32, 327, 351, 748, 1178, 1239, 1510
PspN4I GGNNCC 3 cut(s) 297, 1333, 1516
PspPI GGNCC 2 cut(s) 1265, 1515
PspPPI RGGWCCY 1 cut(s) 1515
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 4 cut(s) 121, 295, 339, 1111
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 2 cut(s) 754, 884
RsaNI GTAC 2 cut(s) 753, 883
RseI CAYNNNNRTG 2 cut(s) 810, 876
SalI GTCGAC 1 cut(s) 1391
SaqAI TTAA 5 cut(s) 47, 54, 504, 600, 612
SatI GCNGC 7 cut(s) 74, 431, 551, 638, 897, 973, 1075
Sau96I GGNCC 2 cut(s) 1265, 1515
SchI GAGTC 1 cut(s) 1556
ScrFI CCNGG 7 cut(s) 34, 329, 353, 750, 1180, 1241, 1512
SfaNI GCATC 5 cut(s) 112, 712, 832, 846, 1323
SinI GGWCC 1 cut(s) 1515
SmiMI CAYNNNNRTG 2 cut(s) 810, 876
SmlI CTYRAG 1 cut(s) 850
SmoI CTYRAG 1 cut(s) 850
SpeI ACTAGT 1 cut(s) 1403
SsiI CCGC 4 cut(s) 74, 618, 746, 979
SspI AATATT 1 cut(s) 1369
SspMI CTAG 5 cut(s) 276, 300, 773, 924, 1404
StyD4I CCNGG 7 cut(s) 32, 327, 351, 748, 1178, 1239, 1510
TaaI ACNGT 5 cut(s) 543, 1055, 1136, 1261, 1339
TaiI ACGT 1 cut(s) 1436
TaqI TCGA 2 cut(s) 1392, 1465
TatI WGTACW 1 cut(s) 882
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 5 cut(s) 704, 831, 920, 1033, 1481
Tru1I TTAA 5 cut(s) 47, 54, 504, 600, 612
Tru9I TTAA 5 cut(s) 47, 54, 504, 600, 612
TscAI CASTG 5 cut(s) 526, 1058, 1139, 1342, 1357
TseFI GTSAC 2 cut(s) 1055, 1220
TseI GCWGC 6 cut(s) 430, 550, 637, 896, 972, 1074
Tsp45I GTSAC 2 cut(s) 1055, 1220
TspDTI ATGAA 8 cut(s) 272, 552, 717, 729, 774, 945, 1442, 1482
TspGWI ACGGA 2 cut(s) 490, 1090
TspRI CASTG 5 cut(s) 526, 1058, 1139, 1342, 1357
VpaK11BI GGWCC 1 cut(s) 1515
VspI ATTAAT 1 cut(s) 612
XagI CCTNNNNNAGG 1 cut(s) 1177
XapI RAATTY 4 cut(s) 282, 1094, 1423, 1552
XmiI GTMKAC 2 cut(s) 27, 1392
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 5 cut(s) 276, 300, 773, 924, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.