Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011312

Physical Location & Seq

Genomic Coordinates Reverse (-)

6261515 .. 6264898

Gene Structure 3384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1046700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGATCCTAAAGAAAGGCAATGGGACACTTGGGAGAATCCTTCCACTGGGAATGATGTGACAAATACGATTTCCTCAGATCATCAACCTTTTACCAGTTACAAATCACGGCAGCATCAACAGAAGTGGGAAAGTCCCTCCGTTTTAGATTATGAAATGGGGATGGAACTGTCCTTCCAGAAATTCCACCAGCCTTCTGATTCGCAAACGTCGCATACTTGCAACTCCAATAACGATACAAAAATACCAGATCGAGAAGATGGTAGGATGCGTGAGGCGCAGCAGCCTGATAAAATCCAAGACTGGGATCCAAGAATGACGTTGAATGATCTCTCTTTTCTGGAACAAAAGATCCATCAGCTTCAGGATTTAGTGCATGTGATTGTTGGCCGGAGAGGTCAAGTTCTAGGACGACCAGATGAACTTGTGGCTCAGCAACAGCAGCTCATAACTGCTGACCTTACTTCCATAATTGCTCAGTTGATCTCTACAGCAGGTAGTCTTCTACCATCTGTGAAGCATACACTTTCCACCACGATTCCTTTTACAGGACAGTTTGGGCAGCTTGGTGGGTCATTCATTCCTTCTGCAGCAGGAAATGATGTGGGTGTTAAGTTGCAAGTTAATAGTGGAAGCAAATTAGCTGATCAGGCCAACCATACTGATCTAATAAGTAATTATGGGACTGAGCACATGGAAGAACATGAAACAAAGGATGAAGAAGATGCTGATGAAGGTGAGAACCTTCCGCCTGGTAGCTACGAAATTTTACAGTTAGAGAAAGAAGAAATCCTGGCACCCCACACTCACTTCTGTGCAATTTGCGGAAAGGGATTCAAGCGGGATGCAAATTTAAGGATGCACATGAGAGGTCATGGAGACGAGTACAAAACCGCAGCAGCACTTGCAAAGCCCAACAAGGAATCCAGCTCCGAACCAACACTTATCAAAAGGTATTCGTGCCCTTATGCTGGCTGCAAGCGGAACAAGGATCACAAAAAGTTTCAGCCCTTGAAGACTATTTTATGTGTCAAGAATCACTACAAGAGAACCCACTGTGACAAAAGTTACACTTGCAGCAGATGCAACAGCAAGAAGTTCTCCGTTATTGCAGATCTGAAAACTCATGAGAAGCATTGTGGTAAGGACAAGTGGCTTTGTTCTTGTGGCACTACCTTCTCAAGGAAAGACAAGCTTTTTGGCCATATTGCCCTTTTCCAAGGTCACACTCCTGCCATACCCCCCGATGAACCAAAAGGAACTCTAGGGCCAACTAACCACGGGGAAGGCAGTGAAGCATCAAACAGAGTTGGAAGCATTAACTTCAGTTTTGGCTCCACTGCTCCTGGCGGAGGTGGTGGATCTCAAAATCTCATGGACGTGAAAGAAAGTATCGATGATCCTACTAGTTACTTCTCTCCATTGAATTTTGAAACCTGTAACTTTGATGGGTTTCATGAGTTGCCTCGACCCCCGTTTGAGGATTCAGAGATCTCTTTTCTTATGCCAGTGTCTTGTAATTACACTGACAAAACTGGAGGGGAGTCGAATTTCAACAATCTTCAACGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043620 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

525

Amino Acids

58.52

Weight (kDa)

6.0

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	319 - 353	2.6e-19	STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C	PF23118	384 - 413	9.8e-23	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34370 AT1G34370 AT1G34370
fragaria_vesca	FvH4_2g12260 FvH4_2g12260
malus_domestica	MD05G1040600.v1.1 MD10G1046700.v1.1
prunus_persica	Prupe.8G055100_v2.0.a1 Prupe.8G055100_v2.0.a1
pyrus_communis	pycom05g03320
rosa_chinensis	RchiOBHm_Chr6g0272161
rosa_laevigata	RLG00000013695
rosa_multiflora	Rmu_sc0005748.1_g000013
rosa_roxburghii	Rroxscaffold_7G00196540
rosa_rugosa	Rorug06G0066600
rosa_samantha	Rh6AG183400 Rh6BG183700 Rh6CG184800 Rh6DG176500
rosa_wichuraiana	Rw6G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	796
AciI	CCGC	6 cut(s)	749, 825, 841, 894, 982, 1350
AclWI	GGATC	7 cut(s)	12, 302, 315, 346, 999, 1369, 1394
AcoI	YGGCCR	2 cut(s)	388, 1201
AcsI	RAATTY	5 cut(s)	182, 765, 850, 1426, 1549
AcuI	CTGAAG	2 cut(s)	347, 1309
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
AgsI	TTSAA	7 cut(s)	325, 838, 1015, 1426, 1433, 1555, 1565
AhlI	ACTAGT	1 cut(s)	1406
AjiI	CACGTC	1 cut(s)	1381
AjnI	CCWGG	3 cut(s)	751, 792, 1345
AleI	CACNNNNGTG	1 cut(s)	813
AloI	GAACNNNNNNTCC	4 cut(s)	159, 191, 336, 368
AluBI	AGCT	7 cut(s)	361, 445, 565, 644, 759, 930, 1195
AluI	AGCT	7 cut(s)	361, 445, 565, 644, 759, 930, 1195
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	1 cut(s)	873
AlwI	GGATC	7 cut(s)	12, 302, 315, 346, 999, 1369, 1394
AoxI	GGCC	4 cut(s)	388, 651, 1201, 1268
ApoI	RAATTY	5 cut(s)	182, 765, 850, 1426, 1549
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	1268
AsuHPI	GGTGA	1 cut(s)	749
BaeGI	GKGCMC	1 cut(s)	965
BalI	TGGCCA	1 cut(s)	1203
BamHI	GGATCC	2 cut(s)	4, 307
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	2 cut(s)	494, 1022
Bbv12I	GWGCWC	1 cut(s)	693
BccI	CCATC	5 cut(s)	157, 254, 363, 517, 1442
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	3 cut(s)	753, 794, 1347
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	873
BcuI	ACTAGT	1 cut(s)	1406
BfaI	CTAG	3 cut(s)	407, 1265, 1407
BfmI	CTRYAG	2 cut(s)	489, 588
BfuAI	ACCTGC	1 cut(s)	485
BglII	AGATCT	2 cut(s)	1114, 1491
BlpI	GCTNAGC	1 cut(s)	432
Bme1390I	CCNGG	3 cut(s)	753, 794, 1347
BmgBI	CACGTC	1 cut(s)	1381
BmgT120I	GGNCC	1 cut(s)	1268
BmiI	GGNNCC	4 cut(s)	6, 309, 798, 1336
BmrFI	CCNGG	3 cut(s)	753, 794, 1347
BmrI	ACTGGG	2 cut(s)	57, 313
BmsI	GCATC	7 cut(s)	124, 258, 715, 835, 849, 1073, 1307
BmuI	ACTGGG	2 cut(s)	57, 313
BpiI	GAAGAC	2 cut(s)	494, 1022
BpmI	CTGGAG	1 cut(s)	1557
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	1165
Bsa29I	ATCGAT	1 cut(s)	1395
BsaJI	CCNNGG	2 cut(s)	1219, 1279
Bsc4I	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
Bse1I	ACTGG	5 cut(s)	52, 96, 308, 1508, 1540
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	3 cut(s)	753, 794, 1347
BseCI	ATCGAT	1 cut(s)	1395
BseDI	CCNNGG	2 cut(s)	1219, 1279
BseGI	GGATG	5 cut(s)	168, 273, 721, 850, 864
BseLI	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	4 cut(s)	90, 446, 491, 678
BseNI	ACTGG	5 cut(s)	52, 96, 308, 1508, 1540
BseSI	GKGCMC	1 cut(s)	965
BshFI	GGCC	4 cut(s)	390, 653, 1203, 1270
BshNI	GGYRCC	1 cut(s)	796
BshVI	ATCGAT	1 cut(s)	1395
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	3 cut(s)	38, 120, 697
BslI	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
BsmAI	GTCTC	1 cut(s)	873
BsmBI	CGTCTC	1 cut(s)	873
BsmFI	GGGAC	3 cut(s)	38, 120, 697
BsnI	GGCC	4 cut(s)	390, 653, 1203, 1270
Bsp1286I	GDGCHC	2 cut(s)	693, 965
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	6 cut(s)	749, 825, 841, 894, 982, 1350
BspANI	GGCC	4 cut(s)	390, 653, 1203, 1270
BspCNI	CTCAG	4 cut(s)	89, 445, 490, 679
BspDI	ATCGAT	1 cut(s)	1395
BspHI	TCATGA	2 cut(s)	1126, 1456
BspLI	GGNNCC	4 cut(s)	6, 309, 798, 1336
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	7 cut(s)	12, 302, 315, 346, 999, 1369, 1394
BspT107I	GGYRCC	1 cut(s)	796
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	5 cut(s)	52, 96, 308, 1508, 1540
BssECI	CCNNGG	2 cut(s)	1219, 1279
BssT1I	CCWWGG	1 cut(s)	1219
Bst2UI	CCWGG	3 cut(s)	753, 794, 1347
Bst4CI	ACNGT	4 cut(s)	171, 555, 774, 1058
BstAPI	GCANNNNNTGC	2 cut(s)	905, 1083
BstC8I	GCNNGC	2 cut(s)	973, 980
BstDEI	CTNAG	4 cut(s)	76, 432, 477, 687
BstDSI	CCRYGG	1 cut(s)	1279
BstENI	CCTNNNNNAGG	3 cut(s)	546, 1180, 1350
BstF5I	GGATG	5 cut(s)	168, 273, 721, 850, 864
BstHHI	GCGC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	873
BstMWI	GCNNNNNNNGC	6 cut(s)	211, 277, 442, 650, 905, 1083
BstNI	CCWGG	3 cut(s)	753, 794, 1347
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	751, 792, 1345
BstSFI	CTRYAG	2 cut(s)	489, 588
BstSLI	GKGCMC	1 cut(s)	965
BstV2I	GAAGAC	2 cut(s)	494, 1022
BstX2I	RGATCY	6 cut(s)	4, 307, 351, 1114, 1361, 1491
BstYI	RGATCY	6 cut(s)	4, 307, 351, 1114, 1361, 1491
Bsu15I	ATCGAT	1 cut(s)	1395
BsuRI	GGCC	4 cut(s)	390, 653, 1203, 1270
BsuTUI	ATCGAT	1 cut(s)	1395
BtgI	CCRYGG	1 cut(s)	1279
BtrI	CACGTC	1 cut(s)	1381
BtsCI	GGATG	5 cut(s)	168, 273, 721, 850, 864
BtsI	GCAGTG	2 cut(s)	1297, 1338
BtsIMutI	CAGTG	6 cut(s)	45, 1054, 1297, 1338, 1515, 1524
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	973, 980
CciI	TCATGA	2 cut(s)	1126, 1456
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	1268
ClaI	ATCGAT	1 cut(s)	1395
Csp6I	GTAC	1 cut(s)	886
CspCI	CAANNNNNGTGG	2 cut(s)	107, 142
CviAII	CATG	8 cut(s)	377, 694, 704, 865, 875, 1127, 1375, 1457
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	4 cut(s)	76, 432, 477, 687
EaeI	YGGCCR	2 cut(s)	388, 1201
EciI	GGCGGA	2 cut(s)	738, 1365
Eco130I	CCWWGG	1 cut(s)	1219
Eco57I	CTGAAG	2 cut(s)	347, 1309
EcoNI	CCTNNNNNAGG	3 cut(s)	546, 1180, 1350
EcoRII	CCWGG	3 cut(s)	751, 792, 1345
EcoT14I	CCWWGG	1 cut(s)	1219
ErhI	CCWWGG	1 cut(s)	1219
Esp3I	CGTCTC	1 cut(s)	873
FaeI	CATG	8 cut(s)	380, 697, 707, 868, 878, 1130, 1378, 1460
FalI	AAGNNNNNCTT	4 cut(s)	1057, 1089, 1179, 1211
FaqI	GGGAC	3 cut(s)	38, 120, 697
FatI	CATG	8 cut(s)	376, 693, 703, 864, 874, 1126, 1374, 1456
FauI	CCCGC	1 cut(s)	834
FbaI	TGATCA	1 cut(s)	646
FokI	GGATG	5 cut(s)	175, 280, 728, 857, 871
FspBI	CTAG	3 cut(s)	407, 1265, 1407
GlaI	GCGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	1557
HaeIII	GGCC	4 cut(s)	390, 653, 1203, 1270
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	8 cut(s)	380, 697, 707, 868, 878, 1130, 1378, 1460
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	1193
HinfI	GANTC	8 cut(s)	37, 200, 538, 834, 923, 1036, 1484, 1544
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	749
Hpy188I	TCNGA	5 cut(s)	79, 199, 934, 1119, 1489
Hpy188III	TCNNGA	7 cut(s)	178, 254, 341, 365, 1033, 1127, 1457
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	8 cut(s)	51, 184, 204, 594, 728, 755, 1186, 1280
HpyCH4III	ACNGT	4 cut(s)	171, 555, 774, 1058
HpyCH4IV	ACGT	3 cut(s)	209, 320, 1380
HpyF10VI	GCNNNNNNNGC	6 cut(s)	211, 277, 442, 650, 905, 1083
HpyF3I	CTNAG	4 cut(s)	76, 432, 477, 687
HpySE526I	ACGT	3 cut(s)	209, 320, 1380
Hsp92II	CATG	8 cut(s)	380, 697, 707, 868, 878, 1130, 1378, 1460
HspAI	GCGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	646
LmnI	GCTCC	3 cut(s)	935, 1340, 1348
LweI	GCATC	7 cut(s)	124, 258, 715, 835, 849, 1073, 1307
MaeI	CTAG	3 cut(s)	407, 1265, 1407
MaeII	ACGT	3 cut(s)	209, 320, 1380
MaeIII	GTNAC	7 cut(s)	58, 98, 1058, 1067, 1223, 1409, 1439
MboII	GAAGA	8 cut(s)	269, 494, 710, 731, 734, 797, 1027, 1553
MflI	RGATCY	6 cut(s)	4, 307, 351, 1114, 1361, 1491
MhlI	GDGCHC	2 cut(s)	693, 965
MlsI	TGGCCA	1 cut(s)	1203
MluNI	TGGCCA	1 cut(s)	1203
MlyI	GAGTC	1 cut(s)	1553
MmeI	TCCRAC	1 cut(s)	1291
MnlI	CCTC	9 cut(s)	85, 148, 268, 389, 863, 1346, 1474, 1476, 1532
Mox20I	TGGCCA	1 cut(s)	1203
MscI	TGGCCA	1 cut(s)	1203
MseI	TTAA	4 cut(s)	612, 624, 854, 1320
MslI	CAYNNNNRTG	2 cut(s)	813, 1379
Msp20I	TGGCCA	1 cut(s)	1203
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	3 cut(s)	753, 794, 1347
MvaI	CCWGG	3 cut(s)	753, 794, 1347
MwoI	GCNNNNNNNGC	6 cut(s)	211, 277, 442, 650, 905, 1083
NlaIII	CATG	8 cut(s)	380, 697, 707, 868, 878, 1130, 1378, 1460
NlaIV	GGNNCC	4 cut(s)	6, 309, 798, 1336
NmuCI	GTSAC	3 cut(s)	58, 1058, 1223
NspI	RCATGY	1 cut(s)	380
OliI	CACNNNNGTG	1 cut(s)	813
PagI	TCATGA	2 cut(s)	1126, 1456
PfeI	GAWTC	7 cut(s)	37, 200, 538, 834, 923, 1036, 1484
PleI	GAGTC	1 cut(s)	1552
PpsI	GAGTC	1 cut(s)	1552
Psp6I	CCWGG	3 cut(s)	751, 792, 1345
PspGI	CCWGG	3 cut(s)	751, 792, 1345
PspN4I	GGNNCC	4 cut(s)	6, 309, 798, 1336
PspPI	GGNCC	1 cut(s)	1268
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	6 cut(s)	4, 307, 351, 1114, 1361, 1491
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	2 cut(s)	813, 1379
SaqAI	TTAA	4 cut(s)	612, 624, 854, 1320
Sau96I	GGNCC	1 cut(s)	1268
SchI	GAGTC	1 cut(s)	1553
ScrFI	CCNGG	3 cut(s)	753, 794, 1347
SduI	GDGCHC	2 cut(s)	693, 965
SfaNI	GCATC	7 cut(s)	124, 258, 715, 835, 849, 1073, 1307
SfcI	CTRYAG	2 cut(s)	489, 588
SmiMI	CAYNNNNRTG	2 cut(s)	813, 1379
SmlI	CTYRAG	1 cut(s)	1180
SmoI	CTYRAG	1 cut(s)	1180
SpeI	ACTAGT	1 cut(s)	1406
SsiI	CCGC	6 cut(s)	749, 825, 841, 894, 982, 1350
SspMI	CTAG	3 cut(s)	407, 1265, 1407
StyD4I	CCNGG	3 cut(s)	751, 792, 1345
StyI	CCWWGG	1 cut(s)	1219
TaaI	ACNGT	4 cut(s)	171, 555, 774, 1058
TaiI	ACGT	3 cut(s)	212, 323, 1383
TaqI	TCGA	4 cut(s)	253, 1395, 1468, 1547
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	7 cut(s)	37, 200, 538, 834, 923, 1036, 1484
Tru1I	TTAA	4 cut(s)	612, 624, 854, 1320
Tru9I	TTAA	4 cut(s)	612, 624, 854, 1320
TscAI	CASTG	6 cut(s)	52, 1061, 1297, 1345, 1515, 1531
TseFI	GTSAC	3 cut(s)	58, 1058, 1223
Tsp45I	GTSAC	3 cut(s)	58, 1058, 1223
TspDTI	ATGAA	8 cut(s)	168, 435, 568, 720, 732, 747, 1263, 1445
TspGWI	ACGGA	2 cut(s)	130, 1093
TspRI	CASTG	6 cut(s)	52, 1061, 1297, 1345, 1515, 1531
XagI	CCTNNNNNAGG	3 cut(s)	546, 1180, 1350
XapI	RAATTY	5 cut(s)	182, 765, 850, 1426, 1549
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	3 cut(s)	407, 1265, 1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.