FvH4_2g12680

Cleavage stimulation factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
11154147 .. 11160504
6358 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12680.t4

Sequence Viewer

Length: 1491 bp
ATGGTCGGCAATTGCGAGTTGATTTTGCTGAAAATGACAAAGGCACTGACAAAAATCGGGAACAGCTACCTACTTCCTCCATCCGATAGAAATTTCCTCTTGCAGTTTCTTGTTCCTCAATTGAATGGCATGAATGACCTGTACCTAGATAACTCCAATTTTGGTCGCGGTGGACCTGGAGTGACCACAAATGTTGACCCTCAAAAGCAAGTTGGAGGCCCAGCGGTTCATGGTGATCCTCTTCATAATCAGCCAATTGGTCTCCATATAGCAATAACTGCAGCAGCCGTTATGGCAGGAGCTCTAGGTGGTCCTCAGGCTGTTTTGCAGTCAAATCAAAATGGTTTGCATAATCAATCTGCATTAGCCAATGATCCTTTGACACTTCATCTAGCCAAAATGTCTAGGAGTCAATTGACTCAAATTATCTCGGAGGTCAAGGGAATGGCTGTACAAAACAAGGAACTAGCTCAGAAGCTATTTCTTGCAAGGCCTCAGTTGCCAAAAGCTCTGTTTCAGGCACAAATAATGCTTGGAATGGTGACCCCACAAATGTTGCAGATGGTAAATATCAGGCAAGCTTCAGGCCAGCCCTCACAGTCTCTATTCAATCAGGGCCAACAGGTTCCGTCACATGCTGTTCAAAATATTGCTGATCTAGCCCCTCCTGCTGAGAACAGGTTGCAGTCTGGGCTGATGCCCAAAATGCAGGACAGCCCCTTTTCTTCTGGGCCTCAAAATTTATTGGTTCATAGCCAGTTTCCTGCACCCCGACAACAAAACGTGCAGCCTCGAATGCAGCTTCCACAACATGCAAACCACAATGTTTTGCAACACGCCACACTGCTAGGGCAAGCTGGAATTCCAACACTTCCTCCCATGCACCCACAGTCCTCAAGCGGTTTGTCCATCCGACCACAAACTCAGGTTGCCAGTTCTTCCGTATTAAACCAGAAAATGCAACCTCCTTTGTCACAACACCCTGGTCAGGTCGGGGTTTCACATTTGGGACATAACACTCGTATAATTCATCAAAATGCTACTGTACAAGAGTCTACTTTATCTCGTCCTTTTTCCGATGCCATCTTTCAGCCTGGTCCCTCAATATCTAAGGGTGTCATACAGTCCATGAACAAGGATGCTGATAAGTCTTCTCGAGTGGTTGCTGATTCTTCAGAATCAGTCACTCGCCCTTCAAAACTAATGAAGTTGGACGATGGAAGGAACACCCTTTTGTCGGCAGGGGGTCTCAATGTTTCAAATGCTAATGTTCTTGGAGTGGGATTGTTGCCTGGAAAGAGTGTTCACAAATCATCAGATGTATACTCTGAGAAACAAATTTCTGAGCCTCAGATTCCACCTGAGGTGGACTCTGCTTTACTGCAACAAGTTTTGAGCCTGCCACCTGAAAAATTAAGCTTGTTGCCACCGGAACAGCGAGAAGAAGTCATTAAGCTGCAGCAGAGGTTTCGGCAAATTCAGCCATCTTAG

Protein Analysis

497

Amino Acids

53.44

Weight (kDa)

9.63

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSTF2_hinge PF14327 77 - 145 6.7e-13 Hinge domain of cleavage stimulation factor subunit 2
CSTF_C PF14304 416 - 449 3.1e-09 Transcription termination and cleavage factor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1055, 1323
AccII CGCG 1 cut(s) 168
AciI CCGC 3 cut(s) 168, 224, 900
AclWI GGATC 2 cut(s) 230, 368
AcsI RAATTY 5 cut(s) 91, 739, 861, 1338, 1476
AcuI CTGAAG 2 cut(s) 567, 1158
AfaI GTAC 3 cut(s) 143, 453, 1047
AfiI CCNNNNNNNGG 2 cut(s) 988, 1237
AgsI TTSAA 5 cut(s) 124, 610, 644, 1197, 1260
AjnI CCWGG 4 cut(s) 175, 982, 1093, 1291
AloI GAACNNNNNNTCC 2 cut(s) 1287, 1319
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 266, 606, 1253
AlwI GGATC 2 cut(s) 230, 368
Ama87I CYCGRG 1 cut(s) 1155
AoxI GGCC 5 cut(s) 217, 491, 586, 616, 731
ApeKI GCWGC 6 cut(s) 281, 284, 787, 799, 1456, 1459
ApoI RAATTY 5 cut(s) 91, 739, 861, 1338, 1476
AspS9I GGNCC 6 cut(s) 173, 218, 311, 616, 731, 1097
AsuHPI GGTGA 2 cut(s) 245, 553
AvaI CYCGRG 1 cut(s) 1155
AvaII GGWCC 3 cut(s) 173, 311, 1097
AxyI CCTNAGG 2 cut(s) 315, 1362
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 1143
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 6 cut(s) 293, 296, 799, 811, 1443, 1471
BccI CCATC 5 cut(s) 88, 556, 917, 1091, 1211
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 1451, 1485
BciT130I CCWGG 4 cut(s) 177, 984, 1095, 1293
BcoDI GTCTC 3 cut(s) 266, 606, 1253
BfaI CTAG 7 cut(s) 146, 305, 392, 405, 467, 659, 848
BfmI CTRYAG 2 cut(s) 279, 1457
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 6 cut(s) 282, 285, 788, 800, 1457, 1460
BlsI GCNGC 6 cut(s) 283, 286, 789, 801, 1458, 1461
Bme1390I CCNGG 4 cut(s) 177, 984, 1095, 1293
Bme18I GGWCC 3 cut(s) 173, 311, 1097
BmeT110I CYCGRG 1 cut(s) 1155
BmgT120I GGNCC 6 cut(s) 173, 218, 311, 616, 731, 1097
BmiI GGNNCC 2 cut(s) 627, 1099
BmrFI CCNGG 4 cut(s) 177, 984, 1095, 1293
BmsI GCATC 3 cut(s) 687, 1069, 1129
BpiI GAAGAC 1 cut(s) 1143
BplI GAGNNNNNCTC 2 cut(s) 1355, 1387
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 880
BsaI GGTCTC 2 cut(s) 266, 1253
BsaJI CCNNGG 1 cut(s) 982
BsaWI WCCGGW 1 cut(s) 1429
BsaXI ACNNNNNCTCC 2 cut(s) 859, 889
Bsc4I CCNNNNNNNGG 2 cut(s) 988, 1237
Bse1I ACTGG 2 cut(s) 757, 933
Bse21I CCTNAGG 2 cut(s) 315, 1362
BseBI CCWGG 4 cut(s) 177, 984, 1095, 1293
BseDI CCNNGG 1 cut(s) 982
BseGI GGATG 3 cut(s) 80, 909, 1144
BseLI CCNNNNNNNGG 2 cut(s) 988, 1237
BseMII CTCAG 9 cut(s) 329, 485, 509, 663, 938, 1320, 1335, 1353, 1364
BseNI ACTGG 2 cut(s) 757, 933
BseXI GCAGC 6 cut(s) 293, 296, 799, 811, 1443, 1471
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 2 cut(s) 750, 806
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 5 cut(s) 219, 493, 588, 618, 733
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 1155
BsiSI CCGG 1 cut(s) 1430
BslFI GGGAC 2 cut(s) 1023, 1083
BslI CCNNNNNNNGG 2 cut(s) 988, 1237
BsmAI GTCTC 3 cut(s) 266, 606, 1253
BsmFI GGGAC 2 cut(s) 1023, 1083
BsmI GAATGC 1 cut(s) 801
BsnI GGCC 5 cut(s) 219, 493, 588, 618, 733
Bso31I GGTCTC 2 cut(s) 266, 1253
BsoBI CYCGRG 1 cut(s) 1155
Bsp1286I GDGCHC 1 cut(s) 304
Bsp1407I TGTACA 2 cut(s) 451, 1045
Bsp143I GATC 3 cut(s) 235, 373, 655
BspACI CCGC 3 cut(s) 168, 224, 900
BspANI GGCC 5 cut(s) 219, 493, 588, 618, 733
BspCNI CTCAG 9 cut(s) 328, 484, 508, 664, 937, 1321, 1336, 1354, 1363
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 627, 1099
BspMAI CTGCAG 2 cut(s) 283, 1461
BspPI GGATC 2 cut(s) 230, 368
BspTNI GGTCTC 2 cut(s) 266, 1253
BsrGI TGTACA 2 cut(s) 451, 1045
BsrI ACTGG 2 cut(s) 757, 933
BssECI CCNNGG 1 cut(s) 982
BssMI GATC 3 cut(s) 235, 373, 655
BssNAI GTATAC 1 cut(s) 1324
Bst1107I GTATAC 1 cut(s) 1324
Bst2UI CCWGG 4 cut(s) 177, 984, 1095, 1293
Bst4CI ACNGT 4 cut(s) 600, 891, 1045, 1125
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 2 cut(s) 451, 1045
BstC8I GCNNGC 4 cut(s) 579, 590, 855, 1400
BstEII GGTNACC 1 cut(s) 541
BstF5I GGATG 3 cut(s) 80, 909, 1144
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 3 cut(s) 238, 376, 658
BstMAI GTCTC 3 cut(s) 266, 606, 1253
BstMBI GATC 3 cut(s) 235, 373, 655
BstMWI GCNNNNNNNGC 9 cut(s) 278, 293, 499, 659, 668, 691, 706, 796, 1480
BstNI CCWGG 4 cut(s) 177, 984, 1095, 1293
BstNSI RCATGY 2 cut(s) 638, 815
BstPI GGTNACC 1 cut(s) 541
BstSCI CCNGG 4 cut(s) 175, 982, 1093, 1291
BstSFI CTRYAG 2 cut(s) 279, 1457
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 6 cut(s) 293, 296, 799, 811, 1443, 1471
BstV2I GAAGAC 1 cut(s) 1143
BstZ17I GTATAC 1 cut(s) 1324
Bsu36I CCTNAGG 2 cut(s) 315, 1362
BsuRI GGCC 5 cut(s) 219, 493, 588, 618, 733
BtsCI GGATG 3 cut(s) 80, 909, 1144
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 2 cut(s) 44, 842
Cac8I GCNNGC 4 cut(s) 579, 590, 855, 1400
Cfr13I GGNCC 6 cut(s) 173, 218, 311, 616, 731, 1097
Csp6I GTAC 3 cut(s) 142, 452, 1046
CspCI CAANNNNNGTGG 4 cut(s) 175, 210, 537, 572
CviAII CATG 6 cut(s) 130, 230, 635, 812, 880, 1129
CviQI GTAC 3 cut(s) 142, 452, 1046
DpnI GATC 3 cut(s) 237, 375, 657
DpnII GATC 3 cut(s) 235, 373, 655
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 302
Eco147I AGGCCT 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 2 cut(s) 266, 1253
Eco47I GGWCC 3 cut(s) 173, 311, 1097
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 567, 1158
Eco81I CCTNAGG 2 cut(s) 315, 1362
Eco88I CYCGRG 1 cut(s) 1155
Eco91I GGTNACC 1 cut(s) 541
EcoICRI GAGCTC 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 541
EcoRI GAATTC 1 cut(s) 861
EcoRII CCWGG 4 cut(s) 175, 982, 1093, 1291
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 6 cut(s) 133, 233, 638, 815, 883, 1132
FaqI GGGAC 2 cut(s) 1023, 1083
FatI CATG 6 cut(s) 129, 229, 634, 811, 879, 1128
FblI GTMKAC 2 cut(s) 1055, 1323
Fnu4HI GCNGC 6 cut(s) 282, 285, 788, 800, 1457, 1460
FokI GGATG 3 cut(s) 67, 896, 1151
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 6 cut(s) 282, 285, 788, 800, 1457, 1460
FspBI CTAG 7 cut(s) 146, 305, 392, 405, 467, 659, 848
GluI GCNGC 6 cut(s) 282, 285, 788, 800, 1457, 1460
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 5 cut(s) 219, 493, 588, 618, 733
HapII CCGG 1 cut(s) 1430
Hin1II CATG 6 cut(s) 133, 233, 638, 815, 883, 1132
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 2 cut(s) 579, 1417
HinfI GANTC 7 cut(s) 409, 418, 1052, 1169, 1178, 1354, 1370
HpaII CCGG 1 cut(s) 1430
HphI GGTGA 2 cut(s) 245, 553
Hpy166II GTNNAC 6 cut(s) 173, 196, 1056, 1306, 1324, 1369
Hpy188III TCNNGA 2 cut(s) 58, 1155
Hpy8I GTNNAC 6 cut(s) 173, 196, 1056, 1306, 1324, 1369
HpyAV CCTTC 2 cut(s) 1203, 1215
HpyCH4III ACNGT 4 cut(s) 600, 891, 1045, 1125
HpyCH4IV ACGT 1 cut(s) 783
HpyF10VI GCNNNNNNNGC 9 cut(s) 278, 293, 499, 659, 668, 691, 706, 796, 1480
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 6 cut(s) 133, 233, 638, 815, 883, 1132
Kzo9I GATC 3 cut(s) 235, 373, 655
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 6 cut(s) 293, 296, 799, 811, 1443, 1471
LweI GCATC 3 cut(s) 687, 1069, 1129
MaeI CTAG 7 cut(s) 146, 305, 392, 405, 467, 659, 848
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 5 cut(s) 181, 541, 630, 972, 1183
MalI GATC 3 cut(s) 237, 375, 657
MboI GATC 3 cut(s) 235, 373, 655
MboII GAAGA 6 cut(s) 233, 717, 930, 1143, 1164, 1454
MfeI CAATTG 4 cut(s) 10, 119, 255, 413
MhlI GDGCHC 1 cut(s) 304
MlyI GAGTC 4 cut(s) 412, 418, 1061, 1364
MmeI TCCRAC 4 cut(s) 193, 890, 937, 1191
MseI TTAA 3 cut(s) 947, 1415, 1452
MslI CAYNNNNRTG 1 cut(s) 1035
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 1430
MspR9I CCNGG 4 cut(s) 177, 984, 1095, 1293
MunI CAATTG 4 cut(s) 10, 119, 255, 413
Mva1269I GAATGC 1 cut(s) 801
MvaI CCWGG 4 cut(s) 177, 984, 1095, 1293
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 9 cut(s) 278, 293, 499, 659, 668, 691, 706, 796, 1480
NdeII GATC 3 cut(s) 235, 373, 655
NlaIII CATG 6 cut(s) 133, 233, 638, 815, 883, 1132
NlaIV GGNNCC 2 cut(s) 627, 1099
NmuCI GTSAC 5 cut(s) 181, 541, 630, 972, 1183
NspI RCATGY 2 cut(s) 638, 815
PaeR7I CTCGAG 1 cut(s) 1155
PceI AGGCCT 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 801
PfeI GAWTC 3 cut(s) 1169, 1178, 1354
PkrI GCNGC 6 cut(s) 283, 286, 789, 801, 1458, 1461
PleI GAGTC 4 cut(s) 412, 417, 1060, 1364
PpsI GAGTC 4 cut(s) 412, 417, 1060, 1364
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 4 cut(s) 175, 982, 1093, 1291
PspEI GGTNACC 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 4 cut(s) 175, 982, 1093, 1291
PspN4I GGNNCC 2 cut(s) 627, 1099
PspPI GGNCC 6 cut(s) 173, 218, 311, 616, 731, 1097
PstI CTGCAG 2 cut(s) 283, 1461
RsaI GTAC 3 cut(s) 143, 453, 1047
RsaNI GTAC 3 cut(s) 142, 452, 1046
RseI CAYNNNNRTG 1 cut(s) 1035
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 3 cut(s) 947, 1415, 1452
SatI GCNGC 6 cut(s) 282, 285, 788, 800, 1457, 1460
Sau3AI GATC 3 cut(s) 235, 373, 655
Sau96I GGNCC 6 cut(s) 173, 218, 311, 616, 731, 1097
SchI GAGTC 4 cut(s) 412, 418, 1061, 1364
ScrFI CCNGG 4 cut(s) 177, 984, 1095, 1293
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 3 cut(s) 687, 1069, 1129
SfcI CTRYAG 2 cut(s) 279, 1457
Sfr274I CTCGAG 1 cut(s) 1155
SinI GGWCC 3 cut(s) 173, 311, 1097
SlaI CTCGAG 1 cut(s) 1155
SmiMI CAYNNNNRTG 1 cut(s) 1035
SmlI CTYRAG 2 cut(s) 895, 1155
SmoI CTYRAG 2 cut(s) 895, 1155
SseBI AGGCCT 1 cut(s) 493
SsiI CCGC 3 cut(s) 168, 224, 900
SspI AATATT 1 cut(s) 649
SspMI CTAG 7 cut(s) 146, 305, 392, 405, 467, 659, 848
SstI GAGCTC 1 cut(s) 304
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 4 cut(s) 175, 982, 1093, 1291
TaaI ACNGT 4 cut(s) 600, 891, 1045, 1125
TaiI ACGT 1 cut(s) 786
TaqI TCGA 2 cut(s) 793, 1156
TatI WGTACW 2 cut(s) 451, 1045
TfiI GAWTC 3 cut(s) 1169, 1178, 1354
Tru1I TTAA 3 cut(s) 947, 1415, 1452
Tru9I TTAA 3 cut(s) 947, 1415, 1452
TscAI CASTG 2 cut(s) 51, 849
TseFI GTSAC 5 cut(s) 181, 541, 630, 972, 1183
TseI GCWGC 6 cut(s) 281, 284, 787, 799, 1456, 1459
Tsp45I GTSAC 5 cut(s) 181, 541, 630, 972, 1183
TspDTI ATGAA 8 cut(s) 146, 218, 233, 377, 740, 1019, 1145, 1220
TspGWI ACGGA 2 cut(s) 618, 931
TspRI CASTG 2 cut(s) 51, 849
VpaK11BI GGWCC 3 cut(s) 173, 311, 1097
XapI RAATTY 5 cut(s) 91, 739, 861, 1338, 1476
XceI RCATGY 2 cut(s) 638, 815
XhoI CTCGAG 1 cut(s) 1155
XmiI GTMKAC 2 cut(s) 1055, 1323
XspI CTAG 7 cut(s) 146, 305, 392, 405, 467, 659, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.