Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011097

Physical Location & Seq

Genomic Coordinates Reverse (-)

32643093 .. 32649022

Gene Structure 5930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCTCCTCTTCTCAGCACCGCTGCGTTTTCGTTGGGAATATTCCTTATGATGCAACTGAGGAACAGCTTATAGAAATCTGCCAGGAGGTTGGGCCTGTTGTATCTTTTAGGTTAGTTATTGATAGAGAGACCGGGAAACCAAAAGGTTATGGATTTTGTGAGTACAAGGATGAAGAGACAGCTTTAAGTGCTCGGCGTAATCTTCAGGGCTACGAGATCAATGGCCGCCAATTACGAGTTGATTTTGCTGAAAATGACAAAGGCACTGACAGGAATCGTGAACAGGGTCGTGGTGGACCTGGAGTGACTGCAAATGTTGACCCTCCAAAGCAAGTTGGAGGTGCAGCGGTTCATGGTGATTCTCTTCACAATCAGCCAATTGGTCTCCATATAGCAATAACTGCAGCAGCCGTCATGGCAGGAGCTCTAGGTGGTCCTCAGGCTGTTTTGCAGTCAAATCAAAATGGTTTGCAGAATCAGTCTGCATTGGCCAATGATCCTTTGACACTTCATCTAGCCAAAATGTCTAGGAGTCAATTGACTCAAATTATCTCGGAGGTCAAAGGAATGGCTATACAAAACAAGGAACTAGCTCATAAGTTATTTATTGCAAGGCCACAGTTGCCAAAAGCTCTGTTTCAGGCACAAATAATGCTAGGGATGGTGACCCGAGAAATGTTGCAGATGGCAAATATCAGGCAAGCTTCAGGCCAGCCCTCACAGCCTCTATTCAATCAGGGCCAACAGGTCCCATCACCTGCTGTTCAAAATCTTGCTGATCTAGCCCCTCCTGCTGAGAATAGGTTGATGCCTAAAATGCAAGATGGCCCATTTTCTGCGTTGCCTCAAAATTTATTGGTTCATAGCCAGTTTTCTGCACCTCGACAACAAAATGCAGCCTCGAATGCAGCTTCCACAACATGCGAACCACAATGTTTTGCAACATGGCACACTGCTAGGGCAGGCTGGAATTCCAACACTTCCTCCCATGCACCCGCAGTCCTCAAGCAGTTTGTCCAGTCGGTCACAAACGCAGGTTGCCAATTCTTCCGTACTAAACCAGAAAATGCAATCTCCTTTGTTACAACACCCTGGTCAGGTCGGGCCTTCACATTTGGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006355 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019219 GO:0019222 GO:0031047 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034641 GO:0034660 GO:0040007 GO:0042868 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071920 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C RRM_1

Protein Analysis

375

Amino Acids

40.57

Weight (kDa)

8.74

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	10 - 80	1e-22	RNA recognition motif
CSTF2_hinge	PF14327	162 - 229	4.4e-13	Hinge domain of cleavage stimulation factor subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71800
fragaria_vesca	FvH4_2g12680 FvH4_2g12680 FvH4_2g12680 FvH4_2g12680
malus_domestica	MD05G1038100.v1.1 MD10G1041800.v1.1
prunus_persica	Prupe.8G045900_v2.0.a1
pyrus_communis	pycom05g02820 pycom10g02890
rosa_chinensis	RchiOBHm_Chr6g0273401
rosa_laevigata	RLG00000013620
rosa_multiflora	Rmu_sc0005891.1_g000012
rosa_roxburghii	Rroxscaffold_7G00195400
rosa_rugosa	Rorug06G0074600
rosa_samantha	Rh6AG189700 Rh6BG193100 Rh6CG192900 Rh6DG184400
rosa_wichuraiana	Rw6G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	769
Acc36I	ACCTGC	2 cut(s)	769, 1028
AciI	CCGC	4 cut(s)	22, 229, 350, 999
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	2 cut(s)	226, 492
AcsI	RAATTY	2 cut(s)	853, 973
AcuI	CTGAAG	2 cut(s)	191, 693
AfaI	GTAC	2 cut(s)	167, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	1100
AgsI	TTSAA	2 cut(s)	736, 770
AjnI	CCWGG	3 cut(s)	84, 301, 1094
AluBI	AGCT	7 cut(s)	70, 185, 428, 596, 635, 707, 914
AluI	AGCT	7 cut(s)	70, 185, 428, 596, 635, 707, 914
Alw21I	GWGCWC	2 cut(s)	196, 430
Alw26I	GTCTC	3 cut(s)	125, 173, 392
AlwI	GGATC	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	672
ApeKI	GCWGC	6 cut(s)	24, 347, 407, 410, 899, 911
ApoI	RAATTY	2 cut(s)	853, 973
AspS9I	GGNCC	8 cut(s)	95, 299, 437, 742, 751, 830, 1107, 1121
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	371, 679, 750
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	3 cut(s)	299, 437, 751
AxyI	CCTNAGG	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	196, 430
BbvI	GCAGC	6 cut(s)	11, 359, 419, 422, 911, 923
BccI	CCATC	4 cut(s)	658, 682, 763, 821
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	3 cut(s)	86, 303, 1096
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	3 cut(s)	125, 173, 392
BfaI	CTAG	7 cut(s)	431, 518, 531, 593, 659, 785, 960
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	2 cut(s)	769, 1028
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	7 cut(s)	25, 229, 348, 408, 411, 900, 912
BlsI	GCNGC	7 cut(s)	26, 230, 349, 409, 412, 901, 913
Bme1390I	CCNGG	4 cut(s)	86, 136, 303, 1096
Bme18I	GGWCC	3 cut(s)	299, 437, 751
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	8 cut(s)	95, 299, 437, 742, 751, 830, 1107, 1121
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	4 cut(s)	86, 136, 303, 1096
BmsI	GCATC	2 cut(s)	43, 801
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	992
BpuMI	CCSGG	1 cut(s)	136
BsaI	GGTCTC	2 cut(s)	125, 392
BsaJI	CCNNGG	1 cut(s)	1094
BsaXI	ACNNNNNCTCC	2 cut(s)	971, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	1100
Bse1I	ACTGG	2 cut(s)	871, 1021
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	86, 303, 1096
BseDI	CCNNGG	1 cut(s)	1094
BseGI	GGATG	2 cut(s)	178, 669
BseLI	CCNNNNNNNGG	1 cut(s)	1100
BseMII	CTCAG	4 cut(s)	29, 51, 455, 789
BseNI	ACTGG	2 cut(s)	871, 1021
BseXI	GCAGC	6 cut(s)	11, 359, 419, 422, 911, 923
BsgI	GTGCAG	2 cut(s)	366, 864
BsiHKAI	GWGCWC	2 cut(s)	196, 430
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	1 cut(s)	1100
BsmAI	GTCTC	3 cut(s)	125, 173, 392
BsmFI	GGGAC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	913
Bso31I	GGTCTC	2 cut(s)	125, 392
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	2 cut(s)	196, 430
Bsp143I	GATC	3 cut(s)	219, 499, 781
BspACI	CCGC	4 cut(s)	22, 229, 350, 999
BspCNI	CTCAG	4 cut(s)	28, 52, 454, 790
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	409
BspMI	ACCTGC	2 cut(s)	769, 1028
BspPI	GGATC	1 cut(s)	494
BspTNI	GGTCTC	2 cut(s)	125, 392
BsrI	ACTGG	2 cut(s)	871, 1021
BssECI	CCNNGG	1 cut(s)	1094
BssMI	GATC	3 cut(s)	219, 499, 781
Bst2UI	CCWGG	3 cut(s)	86, 303, 1096
Bst4CI	ACNGT	1 cut(s)	624
Bst6I	CTCTTC	3 cut(s)	16, 171, 372
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	705, 716, 967
BstDEI	CTNAG	4 cut(s)	15, 60, 441, 798
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	2 cut(s)	178, 669
BstKTI	GATC	3 cut(s)	222, 502, 784
BstMAI	GTCTC	3 cut(s)	125, 173, 392
BstMBI	GATC	3 cut(s)	219, 499, 781
BstMWI	GCNNNNNNNGC	9 cut(s)	191, 404, 419, 625, 724, 785, 794, 820, 908
BstNI	CCWGG	3 cut(s)	86, 303, 1096
BstNSI	RCATGY	1 cut(s)	927
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	4 cut(s)	84, 134, 301, 1094
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	6 cut(s)	11, 359, 419, 422, 911, 923
BstXI	CCANNNNNNTGG	1 cut(s)	92
Bsu36I	CCTNAGG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	178, 669
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	2 cut(s)	267, 954
BveI	ACCTGC	2 cut(s)	769, 1028
Cac8I	GCNNGC	3 cut(s)	705, 716, 967
Cfr13I	GGNCC	8 cut(s)	95, 299, 437, 742, 751, 830, 1107, 1121
Csp6I	GTAC	2 cut(s)	166, 1056
CviAII	CATG	5 cut(s)	356, 418, 924, 948, 992
CviQI	GTAC	2 cut(s)	166, 1056
DdeI	CTNAG	4 cut(s)	15, 60, 441, 798
DpnI	GATC	3 cut(s)	221, 501, 783
DpnII	GATC	3 cut(s)	219, 499, 781
EaeI	YGGCCR	2 cut(s)	226, 492
Eam1104I	CTCTTC	3 cut(s)	16, 171, 372
EarI	CTCTTC	3 cut(s)	16, 171, 372
Ecl136II	GAGCTC	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	430
Eco31I	GGTCTC	2 cut(s)	125, 392
Eco47I	GGWCC	3 cut(s)	299, 437, 751
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	191, 693
Eco81I	CCTNAGG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	672
Eco91I	GGTNACC	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	973
EcoRII	CCWGG	3 cut(s)	84, 301, 1094
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	5 cut(s)	359, 421, 927, 951, 995
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	5 cut(s)	355, 417, 923, 947, 991
FauI	CCCGC	1 cut(s)	1006
Fnu4HI	GCNGC	7 cut(s)	25, 229, 348, 408, 411, 900, 912
FokI	GGATG	2 cut(s)	185, 676
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	7 cut(s)	25, 229, 348, 408, 411, 900, 912
FspBI	CTAG	7 cut(s)	431, 518, 531, 593, 659, 785, 960
GluI	GCNGC	7 cut(s)	25, 229, 348, 408, 411, 900, 912
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	5 cut(s)	359, 421, 927, 951, 995
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	5 cut(s)	277, 362, 478, 535, 544
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	371, 679, 750
Hpy166II	GTNNAC	3 cut(s)	284, 299, 322
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	3 cut(s)	284, 299, 322
HpyAV	CCTTC	1 cut(s)	1120
HpyCH4III	ACNGT	1 cut(s)	624
HpyF10VI	GCNNNNNNNGC	9 cut(s)	191, 404, 419, 625, 724, 785, 794, 820, 908
HpyF3I	CTNAG	4 cut(s)	15, 60, 441, 798
Hsp92II	CATG	5 cut(s)	359, 421, 927, 951, 995
Kzo9I	GATC	3 cut(s)	219, 499, 781
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	6 cut(s)	11, 359, 419, 422, 911, 923
LweI	GCATC	2 cut(s)	43, 801
MaeI	CTAG	7 cut(s)	431, 518, 531, 593, 659, 785, 960
MaeIII	GTNAC	4 cut(s)	307, 667, 1027, 1084
MalI	GATC	3 cut(s)	221, 501, 783
MboI	GATC	3 cut(s)	219, 499, 781
MboII	GAAGA	5 cut(s)	3, 188, 197, 359, 1042
MfeI	CAATTG	2 cut(s)	381, 539
MhlI	GDGCHC	2 cut(s)	196, 430
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	7 cut(s)	233, 381, 539, 549, 853, 973, 1046
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	538, 544
MmeI	TCCRAC	2 cut(s)	319, 1002
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	24, 350
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	4 cut(s)	86, 136, 303, 1096
MunI	CAATTG	2 cut(s)	381, 539
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	3 cut(s)	86, 303, 1096
MwoI	GCNNNNNNNGC	9 cut(s)	191, 404, 419, 625, 724, 785, 794, 820, 908
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	3 cut(s)	219, 499, 781
NlaIII	CATG	5 cut(s)	359, 421, 927, 951, 995
NlaIV	GGNNCC	1 cut(s)	753
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	3 cut(s)	307, 667, 1027
NspI	RCATGY	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	769
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	3 cut(s)	277, 362, 478
PkrI	GCNGC	7 cut(s)	26, 230, 349, 409, 412, 901, 913
PleI	GAGTC	2 cut(s)	538, 543
PpsI	GAGTC	2 cut(s)	538, 543
PpuMI	RGGWCCY	1 cut(s)	751
Psp124BI	GAGCTC	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	3 cut(s)	84, 301, 1094
PspEI	GGTNACC	1 cut(s)	667
PspGI	CCWGG	3 cut(s)	84, 301, 1094
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	8 cut(s)	95, 299, 437, 742, 751, 830, 1107, 1121
PspPPI	RGGWCCY	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	167, 1057
RsaNI	GTAC	2 cut(s)	166, 1056
SacI	GAGCTC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	7 cut(s)	25, 229, 348, 408, 411, 900, 912
Sau3AI	GATC	3 cut(s)	219, 499, 781
Sau96I	GGNCC	8 cut(s)	95, 299, 437, 742, 751, 830, 1107, 1121
SchI	GAGTC	2 cut(s)	538, 544
ScrFI	CCNGG	4 cut(s)	86, 136, 303, 1096
SduI	GDGCHC	2 cut(s)	196, 430
SfaNI	GCATC	2 cut(s)	43, 801
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	3 cut(s)	299, 437, 751
SmlI	CTYRAG	1 cut(s)	1007
SmoI	CTYRAG	1 cut(s)	1007
Sse9I	AATT	7 cut(s)	233, 381, 539, 549, 853, 973, 1046
SsiI	CCGC	4 cut(s)	22, 229, 350, 999
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	7 cut(s)	431, 518, 531, 593, 659, 785, 960
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	4 cut(s)	84, 134, 301, 1094
TaaI	ACNGT	1 cut(s)	624
TaqI	TCGA	2 cut(s)	886, 905
TaqII	GACCGA	1 cut(s)	1015
TasI	AATT	7 cut(s)	233, 381, 539, 549, 853, 973, 1046
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	277, 362, 478
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	2 cut(s)	274, 961
TseFI	GTSAC	3 cut(s)	307, 667, 1027
TseI	GCWGC	6 cut(s)	24, 347, 407, 410, 899, 911
Tsp45I	GTSAC	3 cut(s)	307, 667, 1027
TspDTI	ATGAA	4 cut(s)	189, 344, 503, 854
TspGWI	ACGGA	1 cut(s)	1043
TspRI	CASTG	2 cut(s)	274, 961
VpaK11BI	GGWCC	3 cut(s)	299, 437, 751
XapI	RAATTY	2 cut(s)	853, 973
XceI	RCATGY	1 cut(s)	927
XspI	CTAG	7 cut(s)	431, 518, 531, 593, 659, 785, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.