Rorug06G0074600

Cleavage stimulation factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
9908285 .. 9909886
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0074600.1

Sequence Viewer

Length: 1452 bp
ATGGATACCAAAACCAGCCAGTCTCACATTTTCTTCTTCCCCTATTTGAGTCACGGCCACATGATACCAGTCATAGACATGGCCAAACTATTTGCTTCCAAAGGTATCAAAACCACCATAGTTTCTACCCCTCATAACTTGTCCCTCTTCTCCAAAGCAATCGAGAGAAGCAGACTTTCAGGTTTTGAAATCGGAGTCCTTGCCATCAAATTTCCTGCTGTGGAGGTTGGATTGCCAGAAGGGTGTCAGAGTGCTCACATGGTCAAAAAGTATGAAGACCTCCAAAAGTTCTTGAAGGCCACCGCCATGCTAGAGCAACCACTTGAGCAGCTAATCAAGCAACACAGACCCAATTGCCTTGTCGCCGACATATATTTTCCATGGACAACTGGTGTTGCTGCAAGGTTTGGAATTCCAAGGCTTGTTTTCCATGGAACAAATTTCATCTCTCAATCAGTTTCACATCATTTGATGAAAATGGACCTCACACAAGTGTCTGATTCTGAACCACTTCTCATTCCCAATTTACCACATGAGTTCAAGATTCCAGGAAACCAAATACCCGAGTTCATGAAACAAGAATCTGAGTTGAAACGTTTCGGCCAATCGGCGGCTGAATCGGAGAGGAGCAGCTATGGGGTTATTGTTAATAGTTTCTATGAGATTGAACCAGCCTATGCTGACCATTATAGGAACGTTCTGGGAATCAAGGCTTGGCATATAGGCCCAACATTTCTATGCCATAAGGAGATTGAAGATAAGGCACAAAGAGGACTAGCAAACTCCATAGATGGACATGAATGTCAGAAATGGCTAGATTCCAAGAAACCCAGTTCGGTAATTTATGTGAGCTTTGGGAGTATGGTCAAGTTTGATGATGCTCAGCTCATGGAAATTGCTTTGGGACTCGAAGCTTCCGGGCAGCAATTCATTTGGGTTGTTAAGAAAGATGAAAAGAATGATCATGAAAGTAACGAGGATTGGTTGCCTGAAGGGTTTGAGAAGAGAGTTGAAGGCAGAGGACTGGTTATAAGAGGATGGGCTCCTCAGGTGCAAATTCTTGAACACGTGGCAGTCGGAGGCTTTGTGACACATTGTGGGTGGAACTCGACGCTTGAAGCAGTGTCTGCTGGAGTTCCGATGGTTACGTGGCCGGCGTTTGCTGACCAGTTTCACAATGAGAAGCTGGTGACTCAAATACTTGGCATTGGGGTTGGTGTTGGTGTTTCAAATTGGGCTAGATTTGGAGGGGAAAAAGTGAAGAGTGAGACTATAGAGAAGGTGGTGAAACAGATTATGGTGGGTGAAGAAGCAGAGGAAATGAGAAGCAGAGCCAAGAAGCTTGGGGAAGTGGCAAGAAAGAGTGTGGTGGAAGGGGGATCATCTTACAATGATTTGAATGGCTTGATTGCAGAACTGGGGATCCTACCACTGCTCCCAACTCTTAATTAA

Protein Analysis

483

Amino Acids

53.83

Weight (kDa)

6.24

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 399 1.9e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1031
AasI GACNNNNNNGTC 1 cut(s) 801
AciI CCGC 2 cut(s) 303, 611
AclI AACGTT 2 cut(s) 595, 696
AclWI GGATC 3 cut(s) 1387, 1417, 1430
AcoI YGGCCR 4 cut(s) 55, 81, 601, 1151
AcsI RAATTY 4 cut(s) 209, 411, 439, 1056
AcuI CTGAAG 1 cut(s) 1011
AcvI CACGTG 1 cut(s) 1069
AdeI CACNNNGTG 1 cut(s) 1097
AfiI CCNNNNNNNGG 1 cut(s) 610
AflIII ACRYGT 1 cut(s) 1066
AjnI CCWGG 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 697, 729
AleI CACNNNNGTG 1 cut(s) 491
AloI GAACNNNNNNTCC 2 cut(s) 1407, 1439
AluBI AGCT 7 cut(s) 331, 633, 852, 886, 914, 1186, 1342
AluI AGCT 7 cut(s) 331, 633, 852, 886, 914, 1186, 1342
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 27, 1262
AlwI GGATC 3 cut(s) 1387, 1417, 1430
AlwNI CAGNNNCTG 1 cut(s) 1127
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 6 cut(s) 55, 81, 297, 601, 724, 1151
ApeKI GCWGC 4 cut(s) 328, 398, 630, 922
ApoI RAATTY 4 cut(s) 209, 411, 439, 1056
Asp700I GAANNNNTTC 2 cut(s) 510, 596
AspS9I GGNCC 2 cut(s) 481, 725
AsuC2I CCSGG 1 cut(s) 919
AsuHPI GGTGA 3 cut(s) 1201, 1297, 1316
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 481
AxyI CCTNAGG 1 cut(s) 1047
BalI TGGCCA 1 cut(s) 83
BamHI GGATCC 1 cut(s) 1422
BanII GRGCYC 1 cut(s) 1045
BbrPI CACGTG 1 cut(s) 1069
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 4 cut(s) 340, 385, 642, 934
BccI CCATC 4 cut(s) 212, 785, 1032, 1135
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 1 cut(s) 919
BcoDI GTCTC 2 cut(s) 27, 1262
BfaI CTAG 4 cut(s) 311, 776, 815, 1239
BfmI CTRYAG 1 cut(s) 1272
BisI GCNGC 5 cut(s) 329, 399, 612, 631, 923
BlpI GCTNAGC 1 cut(s) 882
BlsI GCNGC 5 cut(s) 330, 400, 613, 632, 924
Bme1390I CCNGG 2 cut(s) 549, 919
Bme18I GGWCC 1 cut(s) 481
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 2 cut(s) 481, 725
BmiI GGNNCC 2 cut(s) 1044, 1424
BmrFI CCNGG 2 cut(s) 549, 919
BmrI ACTGGG 2 cut(s) 825, 1427
BmsI GCATC 1 cut(s) 868
BmuI ACTGGG 2 cut(s) 825, 1427
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 1152
Bpu1102I GCTNAGC 1 cut(s) 882
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 919
BsaAI YACGTR 2 cut(s) 1069, 1149
BsaJI CCNNGG 3 cut(s) 380, 416, 430
BsaXI ACNNNNNCTCC 4 cut(s) 1071, 1101, 1419, 1449
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse118I RCCGGY 1 cut(s) 1153
Bse1I ACTGG 7 cut(s) 19, 68, 394, 831, 1029, 1168, 1422
Bse21I CCTNAGG 1 cut(s) 1047
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 3 cut(s) 380, 416, 430
BseGI GGATG 1 cut(s) 1043
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 3 cut(s) 576, 896, 1061
BseNI ACTGG 7 cut(s) 19, 68, 394, 831, 1029, 1168, 1422
BseRI GAGGAG 2 cut(s) 640, 1035
BseXI GCAGC 4 cut(s) 340, 385, 642, 934
BshFI GGCC 6 cut(s) 57, 83, 299, 603, 726, 1153
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 2 cut(s) 918, 1154
BslFI GGGAC 2 cut(s) 127, 918
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 2 cut(s) 27, 1262
BsmFI GGGAC 2 cut(s) 127, 918
BsnI GGCC 6 cut(s) 57, 83, 299, 603, 726, 1153
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 256, 1045
Bsp143I GATC 3 cut(s) 961, 1379, 1422
Bsp1720I GCTNAGC 1 cut(s) 882
Bsp19I CCATGG 2 cut(s) 380, 430
BspACI CCGC 2 cut(s) 303, 611
BspANI GGCC 6 cut(s) 57, 83, 299, 603, 726, 1153
BspCNI CTCAG 3 cut(s) 577, 895, 1060
BspHI TCATGA 2 cut(s) 570, 964
BspLI GGNNCC 2 cut(s) 1044, 1424
BspPI GGATC 3 cut(s) 1387, 1417, 1430
BsrFI RCCGGY 1 cut(s) 1153
BsrI ACTGG 7 cut(s) 19, 68, 394, 831, 1029, 1168, 1422
BssAI RCCGGY 1 cut(s) 1153
BssECI CCNNGG 3 cut(s) 380, 416, 430
BssMI GATC 3 cut(s) 961, 1379, 1422
BssT1I CCWWGG 3 cut(s) 380, 416, 430
Bst2UI CCWGG 1 cut(s) 549
Bst6I CTCTTC 3 cut(s) 152, 998, 1256
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstBAI YACGTR 2 cut(s) 1069, 1149
BstC8I GCNNGC 1 cut(s) 1155
BstDEI CTNAG 3 cut(s) 585, 882, 1047
BstDSI CCRYGG 2 cut(s) 380, 430
BstF5I GGATG 1 cut(s) 1043
BstKTI GATC 3 cut(s) 964, 1382, 1425
BstMAI GTCTC 2 cut(s) 27, 1262
BstMBI GATC 3 cut(s) 961, 1379, 1422
BstMWI GCNNNNNNNGC 2 cut(s) 337, 1127
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 2 cut(s) 547, 917
BstSFI CTRYAG 1 cut(s) 1272
BstV1I GCAGC 4 cut(s) 340, 385, 642, 934
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 1422
BstYI RGATCY 1 cut(s) 1422
Bsu36I CCTNAGG 1 cut(s) 1047
BsuRI GGCC 6 cut(s) 57, 83, 299, 603, 726, 1153
BtgI CCRYGG 2 cut(s) 380, 430
BtsCI GGATG 1 cut(s) 1043
BtsI GCAGTG 2 cut(s) 1128, 1430
BtsIMutI CAGTG 2 cut(s) 1128, 1430
Cac8I GCNNGC 1 cut(s) 1155
CaiI CAGNNNCTG 1 cut(s) 1127
CciI TCATGA 2 cut(s) 570, 964
Cfr10I RCCGGY 1 cut(s) 1153
Cfr13I GGNCC 2 cut(s) 481, 725
CseI GACGC 1 cut(s) 1120
DdeI CTNAG 3 cut(s) 585, 882, 1047
DpnI GATC 3 cut(s) 963, 1381, 1424
DpnII GATC 3 cut(s) 961, 1379, 1422
DraIII CACNNNGTG 1 cut(s) 1097
DrdI GACNNNNNNGTC 1 cut(s) 801
DseDI GACNNNNNNGTC 1 cut(s) 801
EaeI YGGCCR 4 cut(s) 55, 81, 601, 1151
Eam1104I CTCTTC 3 cut(s) 152, 998, 1256
EarI CTCTTC 3 cut(s) 152, 998, 1256
Eco130I CCWWGG 3 cut(s) 380, 416, 430
Eco24I GRGCYC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 1011
Eco72I CACGTG 1 cut(s) 1069
Eco81I CCTNAGG 1 cut(s) 1047
Eco88I CYCGRG 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 3 cut(s) 380, 416, 430
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 3 cut(s) 380, 416, 430
FaqI GGGAC 2 cut(s) 127, 918
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 5 cut(s) 329, 399, 612, 631, 923
FokI GGATG 1 cut(s) 1050
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 5 cut(s) 329, 399, 612, 631, 923
FspBI CTAG 4 cut(s) 311, 776, 815, 1239
GluI GCNGC 5 cut(s) 329, 399, 612, 631, 923
GsuI CTGGAG 1 cut(s) 1152
HaeIII GGCC 6 cut(s) 57, 83, 299, 603, 726, 1153
HapII CCGG 2 cut(s) 918, 1154
HgaI GACGC 1 cut(s) 1120
HindIII AAGCTT 2 cut(s) 912, 1340
HpaII CCGG 2 cut(s) 918, 1154
HphI GGTGA 3 cut(s) 1201, 1297, 1316
Hpy188I TCNGA 9 cut(s) 194, 249, 499, 505, 586, 622, 807, 1079, 1140
Hpy188III TCNNGA 6 cut(s) 163, 292, 541, 571, 965, 1061
Hpy99I CGWCG 1 cut(s) 1114
HpyAV CCTTC 6 cut(s) 233, 289, 986, 1007, 1273, 1367
HpyCH4IV ACGT 4 cut(s) 595, 696, 1068, 1148
HpyCH4V TGCA 3 cut(s) 401, 1054, 1412
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 1127
HpyF3I CTNAG 3 cut(s) 585, 882, 1047
HpySE526I ACGT 4 cut(s) 595, 696, 1068, 1148
KroI GCCGGC 1 cut(s) 1153
KroNI GCCGGC 1 cut(s) 1155
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 3 cut(s) 961, 1379, 1422
LmnI GCTCC 3 cut(s) 627, 1048, 1440
Lsp1109I GCAGC 4 cut(s) 340, 385, 642, 934
LweI GCATC 1 cut(s) 868
MaeI CTAG 4 cut(s) 311, 776, 815, 1239
MaeII ACGT 4 cut(s) 595, 696, 1068, 1148
MaeIII GTNAC 5 cut(s) 50, 971, 1087, 1144, 1189
MalI GATC 3 cut(s) 963, 1381, 1424
MboI GATC 3 cut(s) 961, 1379, 1422
MboII GAAGA 8 cut(s) 25, 28, 139, 287, 767, 1015, 1273, 1319
MfeI CAATTG 1 cut(s) 352
MflI RGATCY 1 cut(s) 1422
MhlI GDGCHC 2 cut(s) 256, 1045
MlsI TGGCCA 1 cut(s) 83
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 4 cut(s) 58, 204, 900, 1186
MmeI TCCRAC 2 cut(s) 208, 1057
Mox20I TGGCCA 1 cut(s) 83
MroNI GCCGGC 1 cut(s) 1153
MroXI GAANNNNTTC 2 cut(s) 510, 596
MscI TGGCCA 1 cut(s) 83
MseI TTAA 4 cut(s) 648, 942, 1446, 1450
MslI CAYNNNNRTG 4 cut(s) 77, 305, 491, 736
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 918, 1154
MspR9I CCNGG 2 cut(s) 549, 919
MunI CAATTG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 337, 1127
NaeI GCCGGC 1 cut(s) 1155
NciI CCSGG 1 cut(s) 919
NcoI CCATGG 2 cut(s) 380, 430
NdeII GATC 3 cut(s) 961, 1379, 1422
NgoMIV GCCGGC 1 cut(s) 1153
NlaIV GGNNCC 2 cut(s) 1044, 1424
NmuCI GTSAC 3 cut(s) 50, 1087, 1189
OliI CACNNNNGTG 1 cut(s) 491
PacI TTAATTAA 1 cut(s) 1450
PagI TCATGA 2 cut(s) 570, 964
PcsI WCGNNNNNNNCGW 1 cut(s) 1154
PdiI GCCGGC 1 cut(s) 1155
PdmI GAANNNNTTC 2 cut(s) 510, 596
PfeI GAWTC 6 cut(s) 500, 544, 581, 617, 705, 818
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 5 cut(s) 330, 400, 613, 632, 924
PleI GAGTC 4 cut(s) 57, 203, 900, 1186
PmaCI CACGTG 1 cut(s) 1069
PmlI CACGTG 1 cut(s) 1069
PpsI GAGTC 4 cut(s) 57, 203, 900, 1186
Ppu21I YACGTR 2 cut(s) 1069, 1149
PsiI TTATAA 1 cut(s) 1031
Psp1406I AACGTT 2 cut(s) 595, 696
Psp6I CCWGG 1 cut(s) 547
PspCI CACGTG 1 cut(s) 1069
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 1044, 1424
PspPI GGNCC 2 cut(s) 481, 725
PstNI CAGNNNCTG 1 cut(s) 1127
PsuI RGATCY 1 cut(s) 1422
RseI CAYNNNNRTG 4 cut(s) 77, 305, 491, 736
SaqAI TTAA 4 cut(s) 648, 942, 1446, 1450
SatI GCNGC 5 cut(s) 329, 399, 612, 631, 923
Sau3AI GATC 3 cut(s) 961, 1379, 1422
Sau96I GGNCC 2 cut(s) 481, 725
SchI GAGTC 4 cut(s) 58, 204, 900, 1186
ScrFI CCNGG 2 cut(s) 549, 919
SduI GDGCHC 2 cut(s) 256, 1045
SfaNI GCATC 1 cut(s) 868
SfcI CTRYAG 1 cut(s) 1272
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 4 cut(s) 77, 305, 491, 736
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SsiI CCGC 2 cut(s) 303, 611
SspMI CTAG 4 cut(s) 311, 776, 815, 1239
StyD4I CCNGG 2 cut(s) 547, 917
StyI CCWWGG 3 cut(s) 380, 416, 430
TaiI ACGT 4 cut(s) 598, 699, 1071, 1151
TaqI TCGA 3 cut(s) 162, 909, 1109
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 6 cut(s) 500, 544, 581, 617, 705, 818
Tru1I TTAA 4 cut(s) 648, 942, 1446, 1450
Tru9I TTAA 4 cut(s) 648, 942, 1446, 1450
TscAI CASTG 2 cut(s) 1128, 1437
TseFI GTSAC 3 cut(s) 50, 1087, 1189
TseI GCWGC 4 cut(s) 328, 398, 630, 922
Tsp45I GTSAC 3 cut(s) 50, 1087, 1189
TspDTI ATGAA 9 cut(s) 288, 433, 488, 559, 587, 813, 919, 966, 981
TspRI CASTG 2 cut(s) 1128, 1437
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 4 cut(s) 209, 411, 439, 1056
XmnI GAANNNNTTC 2 cut(s) 510, 596
XspI CTAG 4 cut(s) 311, 776, 815, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.