pycom10g02890

Cleavage stimulation factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
3221675 .. 3224935
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02890.3

Sequence Viewer

Length: 1128 bp
ATGAGTAAACATGCCATTAATAACACAGTTAATTATTTTTTGGTGAGACATGAGACACGGCATGCAAAAACATTCGAAACCGCAGTTTCTTGCTTCTTCTGTTTTTCATCCACCAAATCTATCGACTTCGCTCCCCCCTCTCTCTCTCGACCTTCTCTGCGAATCCCGTCTCGAGGAGAGGAGTTCCAAAGAAAACCGAAGAACAGAAAGAATGGTAAGGAGGAAGAAGATGAAGCAGCGCTTCACCTTCTTCTCCTCCTCTTGAGATTCATGGCCGCTTCTCAGCACCGCTGCGTTTTTGTGGGGAATATACCTTATGATGCCACTGAGGAACAGCTCGTAGAAATCTGCCGGGAGGTTGGTCCTGTTGTATCTTTCAGACTAGTTATTGATAGAGAGACTGGAAAACCAAAGGGTTACGGGTTTTGTGAGTACAAGGATGAAGAGACTGCTCTAAGTGCTCGTCGTAATCTTCAGGGTTATGAGATCAATGGCCGGCAATTACGAGTGGATTTTGCTGAAAATGACAAAGGCACTGATAGAAGTCGAGATCAGGGTCGTGGTGGACCAGGACTGACTGCTAATGTTGATCCTCAAAAGCAAGGAGGGGGGCCATCTGTTCATGCAGAATCTCTTCAACATCAGCCAATTGGTCTCCATATAGCTATTACTGCAGCTACCGTCATGGCAGGAGCTCTAGGTGGTGCTCAGTCTGGTTTGCAGAATCAATTGGCATCACCAAATGATCCCTTGACACTTCATCTGGCCAAAATCTCTAGGGGTCAGTTGAATCAAGTTATGTTGGAGCTCAAGGTACTTGCTACACAAAACAAAGGGCTAGCTCGTCAACTATTGCTTGCAAGGCCACAGTTGCCAAAAGCCCTCTTCCAGGCACAAATAATGCTCGGAATGGTGAGCCCACAAATGTTGCAGATGCCAAATATCAGGCAAGCTTCGGGTCATACCTCACAGCCTCCATTCAACAAGGCCCATTGCAGTCTGGGTTGGTGCCCAATGTGCAAGAAGGCCAATTTGCAGCTGTACCTCAAAATCCATTGGGTAGAAGCCAGTTTTCTGCACCCCAACAGCAACCCATGCAGCCTCGAATGCAGCTTCCACAACATGTAA

Protein Analysis

376

Amino Acids

41.61

Weight (kDa)

9.14

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1008
AciI CCGC 3 cut(s) 81, 276, 289
AclWI GGATC 2 cut(s) 584, 740
AcoI YGGCCR 3 cut(s) 273, 493, 765
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 3 cut(s) 434, 816, 1043
AfeI AGCGCT 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 173, 889
AflIII ACRYGT 1 cut(s) 1122
AgsI TTSAA 3 cut(s) 638, 790, 982
AhlI ACTAGT 1 cut(s) 382
AjnI CCWGG 2 cut(s) 568, 888
AluBI AGCT 9 cut(s) 337, 665, 677, 695, 808, 842, 953, 1039, 1113
AluI AGCT 9 cut(s) 337, 665, 677, 695, 808, 842, 953, 1039, 1113
Alw21I GWGCWC 4 cut(s) 463, 697, 709, 810
Alw26I GTCTC 6 cut(s) 40, 47, 174, 392, 440, 659
AlwI GGATC 2 cut(s) 584, 740
Ama87I CYCGRG 1 cut(s) 171
Aor51HI AGCGCT 1 cut(s) 240
AoxI GGCC 7 cut(s) 273, 493, 611, 765, 863, 987, 1026
ApeKI GCWGC 6 cut(s) 236, 291, 674, 1036, 1098, 1110
AseI ATTAAT 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 4 cut(s) 362, 566, 611, 988
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 4 cut(s) 55, 236, 729, 925
AsuII TTCGAA 1 cut(s) 75
AsuNHI GCTAGC 1 cut(s) 838
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 2 cut(s) 362, 566
BaeGI GKGCMC 1 cut(s) 1013
BalI TGGCCA 1 cut(s) 767
BanI GGYRCC 1 cut(s) 1008
BanII GRGCYC 3 cut(s) 697, 810, 920
Bbv12I GWGCWC 4 cut(s) 463, 697, 709, 810
BbvI GCAGC 6 cut(s) 248, 278, 686, 1048, 1110, 1122
BccI CCATC 1 cut(s) 622
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 570, 890
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 6 cut(s) 40, 47, 174, 392, 440, 659
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 4 cut(s) 383, 698, 777, 839
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 7 cut(s) 237, 276, 292, 675, 1037, 1099, 1111
BlsI GCNGC 7 cut(s) 238, 277, 293, 676, 1038, 1100, 1112
Bme1390I CCNGG 3 cut(s) 353, 570, 890
Bme18I GGWCC 2 cut(s) 362, 566
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 4 cut(s) 362, 566, 611, 988
BmiI GGNNCC 2 cut(s) 612, 1010
BmrFI CCNGG 3 cut(s) 353, 570, 890
BmsI GCATC 3 cut(s) 310, 743, 924
BmtI GCTAGC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 283, 794
BpuMI CCSGG 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 659
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 889
Bse118I RCCGGY 1 cut(s) 495
Bse1I ACTGG 2 cut(s) 406, 1068
Bse3DI GCAATG 1 cut(s) 991
BseBI CCWGG 2 cut(s) 570, 890
BseGI GGATG 2 cut(s) 107, 445
BseLI CCNNNNNNNGG 2 cut(s) 173, 889
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 3 cut(s) 296, 318, 722
BseNI ACTGG 2 cut(s) 406, 1068
BseRI GAGGAG 4 cut(s) 189, 194, 245, 248
BseSI GKGCMC 1 cut(s) 1013
BseXI GCAGC 6 cut(s) 248, 278, 686, 1048, 1110, 1122
BsgI GTGCAG 1 cut(s) 1061
BshFI GGCC 7 cut(s) 275, 495, 613, 767, 865, 989, 1028
BshNI GGYRCC 1 cut(s) 1008
BsiHKAI GWGCWC 4 cut(s) 463, 697, 709, 810
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 2 cut(s) 352, 496
BslI CCNNNNNNNGG 2 cut(s) 173, 889
BsmAI GTCTC 6 cut(s) 40, 47, 174, 392, 440, 659
BsmBI CGTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 1112
BsnI GGCC 7 cut(s) 275, 495, 613, 767, 865, 989, 1028
Bso31I GGTCTC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 75
Bsp1286I GDGCHC 6 cut(s) 463, 697, 709, 810, 920, 1013
Bsp143I GATC 4 cut(s) 486, 550, 589, 745
BspACI CCGC 3 cut(s) 81, 276, 289
BspANI GGCC 7 cut(s) 275, 495, 613, 767, 865, 989, 1028
BspCNI CTCAG 3 cut(s) 295, 319, 721
BspLI GGNNCC 2 cut(s) 612, 1010
BspMAI CTGCAG 1 cut(s) 676
BspOI GCTAGC 1 cut(s) 842
BspPI GGATC 2 cut(s) 584, 740
BspT104I TTCGAA 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 1008
BspTNI GGTCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 991
BsrFI RCCGGY 1 cut(s) 495
BsrI ACTGG 2 cut(s) 406, 1068
BssAI RCCGGY 1 cut(s) 495
BssMI GATC 4 cut(s) 486, 550, 589, 745
Bst2UI CCWGG 2 cut(s) 570, 890
Bst4CI ACNGT 3 cut(s) 28, 682, 870
Bst6I CTCTTC 3 cut(s) 438, 639, 890
BstAPI GCANNNNNTGC 1 cut(s) 1095
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 5 cut(s) 63, 497, 840, 858, 951
BstDEI CTNAG 4 cut(s) 282, 327, 455, 708
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 2 cut(s) 107, 445
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 4 cut(s) 489, 553, 592, 748
BstMAI GTCTC 6 cut(s) 40, 47, 174, 392, 440, 659
BstMBI GATC 4 cut(s) 486, 550, 589, 745
BstMWI GCNNNNNNNGC 7 cut(s) 458, 671, 862, 871, 1017, 1095, 1107
BstNI CCWGG 2 cut(s) 570, 890
BstNSI RCATGY 3 cut(s) 14, 65, 1126
BstSCI CCNGG 3 cut(s) 351, 568, 888
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 1013
BstV1I GCAGC 6 cut(s) 248, 278, 686, 1048, 1110, 1122
BsuRI GGCC 7 cut(s) 275, 495, 613, 767, 865, 989, 1028
BtsCI GGATG 2 cut(s) 107, 445
BtsIMutI CAGTG 2 cut(s) 324, 534
Cac8I GCNNGC 5 cut(s) 63, 497, 840, 858, 951
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 495
Cfr13I GGNCC 4 cut(s) 362, 566, 611, 988
Csp6I GTAC 3 cut(s) 433, 815, 1042
CspCI CAANNNNNGTGG 2 cut(s) 909, 944
CviAII CATG 8 cut(s) 11, 50, 62, 271, 623, 685, 1095, 1123
CviQI GTAC 3 cut(s) 433, 815, 1042
DdeI CTNAG 4 cut(s) 282, 327, 455, 708
DpnI GATC 4 cut(s) 488, 552, 591, 747
DpnII GATC 4 cut(s) 486, 550, 589, 745
EaeI YGGCCR 3 cut(s) 273, 493, 765
Eam1104I CTCTTC 3 cut(s) 438, 639, 890
EarI CTCTTC 3 cut(s) 438, 639, 890
Ecl136II GAGCTC 2 cut(s) 695, 808
Eco24I GRGCYC 3 cut(s) 697, 810, 920
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 2 cut(s) 362, 566
Eco47III AGCGCT 1 cut(s) 240
Eco53kI GAGCTC 2 cut(s) 695, 808
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 171
EcoICRI GAGCTC 2 cut(s) 695, 808
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoRII CCWGG 2 cut(s) 568, 888
EcoT38I GRGCYC 3 cut(s) 697, 810, 920
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 8 cut(s) 14, 53, 65, 274, 626, 688, 1098, 1126
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 8 cut(s) 10, 49, 61, 270, 622, 684, 1094, 1122
Fnu4HI GCNGC 7 cut(s) 237, 276, 292, 675, 1037, 1099, 1111
FokI GGATG 2 cut(s) 94, 452
FriOI GRGCYC 3 cut(s) 697, 810, 920
Fsp4HI GCNGC 7 cut(s) 237, 276, 292, 675, 1037, 1099, 1111
FspBI CTAG 4 cut(s) 383, 698, 777, 839
GlaI GCGC 1 cut(s) 240
GluI GCNGC 7 cut(s) 237, 276, 292, 675, 1037, 1099, 1111
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 7 cut(s) 275, 495, 613, 767, 865, 989, 1028
HapII CCGG 2 cut(s) 352, 496
HhaI GCGC 1 cut(s) 241
Hin1II CATG 8 cut(s) 14, 53, 65, 274, 626, 688, 1098, 1126
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 848
HindII GTYRAC 1 cut(s) 848
HindIII AAGCTT 1 cut(s) 951
HinfI GANTC 5 cut(s) 162, 267, 629, 724, 790
HpaII CCGG 2 cut(s) 352, 496
HphI GGTGA 4 cut(s) 55, 236, 729, 925
Hpy166II GTNNAC 3 cut(s) 8, 566, 848
Hpy188I TCNGA 2 cut(s) 380, 908
Hpy188III TCNNGA 4 cut(s) 147, 171, 262, 548
Hpy8I GTNNAC 3 cut(s) 8, 566, 848
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 3 cut(s) 162, 257, 1018
HpyCH4III ACNGT 3 cut(s) 28, 682, 870
HpyF10VI GCNNNNNNNGC 7 cut(s) 458, 671, 862, 871, 1017, 1095, 1107
HpyF3I CTNAG 4 cut(s) 282, 327, 455, 708
Hsp92II CATG 8 cut(s) 14, 53, 65, 274, 626, 688, 1098, 1126
HspAI GCGC 1 cut(s) 239
KroI GCCGGC 1 cut(s) 495
KroNI GCCGGC 1 cut(s) 497
Kzo9I GATC 4 cut(s) 486, 550, 589, 745
LmnI GCTCC 3 cut(s) 136, 692, 805
Lsp1109I GCAGC 6 cut(s) 248, 278, 686, 1048, 1110, 1122
LweI GCATC 3 cut(s) 310, 743, 924
MaeI CTAG 4 cut(s) 383, 698, 777, 839
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 488, 552, 591, 747
MboI GATC 4 cut(s) 486, 550, 589, 745
MboII GAAGA 9 cut(s) 88, 211, 236, 239, 242, 455, 464, 626, 877
MfeI CAATTG 2 cut(s) 648, 728
MhlI GDGCHC 6 cut(s) 463, 697, 709, 810, 920, 1013
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 5 cut(s) 31, 500, 648, 728, 1030
MluNI TGGCCA 1 cut(s) 767
MmeI TCCRAC 1 cut(s) 783
Mox20I TGGCCA 1 cut(s) 767
MroNI GCCGGC 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 767
MseI TTAA 2 cut(s) 18, 30
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 2 cut(s) 291, 1039
MspI CCGG 2 cut(s) 352, 496
MspR9I CCNGG 3 cut(s) 353, 570, 890
MunI CAATTG 2 cut(s) 648, 728
Mva1269I GAATGC 1 cut(s) 1112
MvaI CCWGG 2 cut(s) 570, 890
MwoI GCNNNNNNNGC 7 cut(s) 458, 671, 862, 871, 1017, 1095, 1107
NaeI GCCGGC 1 cut(s) 497
NciI CCSGG 1 cut(s) 353
NdeII GATC 4 cut(s) 486, 550, 589, 745
NgoMIV GCCGGC 1 cut(s) 495
NheI GCTAGC 1 cut(s) 838
NlaIII CATG 8 cut(s) 14, 53, 65, 274, 626, 688, 1098, 1126
NlaIV GGNNCC 2 cut(s) 612, 1010
NspI RCATGY 3 cut(s) 14, 65, 1126
NspV TTCGAA 1 cut(s) 75
PaeI GCATGC 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 171
PciI ACATGT 1 cut(s) 1122
PctI GAATGC 1 cut(s) 1112
PdiI GCCGGC 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 5 cut(s) 162, 267, 629, 724, 790
PkrI GCNGC 7 cut(s) 238, 277, 293, 676, 1038, 1100, 1112
PscI ACATGT 1 cut(s) 1122
PshBI ATTAAT 1 cut(s) 18
Psp124BI GAGCTC 2 cut(s) 697, 810
Psp6I CCWGG 2 cut(s) 568, 888
PspGI CCWGG 2 cut(s) 568, 888
PspN4I GGNNCC 2 cut(s) 612, 1010
PspPI GGNCC 4 cut(s) 362, 566, 611, 988
PstI CTGCAG 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 1039
RsaI GTAC 3 cut(s) 434, 816, 1043
RsaNI GTAC 3 cut(s) 433, 815, 1042
SacI GAGCTC 2 cut(s) 697, 810
SaqAI TTAA 2 cut(s) 18, 30
SatI GCNGC 7 cut(s) 237, 276, 292, 675, 1037, 1099, 1111
Sau3AI GATC 4 cut(s) 486, 550, 589, 745
Sau96I GGNCC 4 cut(s) 362, 566, 611, 988
ScrFI CCNGG 3 cut(s) 353, 570, 890
SduI GDGCHC 6 cut(s) 463, 697, 709, 810, 920, 1013
SfaNI GCATC 3 cut(s) 310, 743, 924
SfcI CTRYAG 1 cut(s) 672
Sfr274I CTCGAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 75
SinI GGWCC 2 cut(s) 362, 566
SlaI CTCGAG 1 cut(s) 171
SmlI CTYRAG 3 cut(s) 171, 262, 809
SmoI CTYRAG 3 cut(s) 171, 262, 809
SpeI ACTAGT 1 cut(s) 382
SphI GCATGC 1 cut(s) 65
Sse9I AATT 5 cut(s) 31, 500, 648, 728, 1030
SsiI CCGC 3 cut(s) 81, 276, 289
SspMI CTAG 4 cut(s) 383, 698, 777, 839
SstI GAGCTC 2 cut(s) 697, 810
StyD4I CCNGG 3 cut(s) 351, 568, 888
TaaI ACNGT 3 cut(s) 28, 682, 870
TaqI TCGA 6 cut(s) 75, 123, 148, 172, 547, 1104
TasI AATT 5 cut(s) 31, 500, 648, 728, 1030
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 5 cut(s) 162, 267, 629, 724, 790
Tru1I TTAA 2 cut(s) 18, 30
Tru9I TTAA 2 cut(s) 18, 30
TscAI CASTG 2 cut(s) 331, 541
TseI GCWGC 6 cut(s) 236, 291, 674, 1036, 1098, 1110
TspDTI ATGAA 6 cut(s) 96, 246, 259, 456, 611, 749
TspRI CASTG 2 cut(s) 331, 541
VpaK11BI GGWCC 2 cut(s) 362, 566
VspI ATTAAT 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 887
XceI RCATGY 3 cut(s) 14, 65, 1126
XhoI CTCGAG 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 4 cut(s) 383, 698, 777, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.