FvH4_2g12800

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010685
Physical Location & Seq
Reverse (-)
11244001 .. 11248310
4310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12800.t1

Sequence Viewer

Length: 618 bp
ATGGCGTTGCGCAGACGGACGTTGCTTAAGGTCATCGTTCTCGGCGACAGTGGGGTTGGCAAGACCTCGTTGATGAACCAATATGTGCATAAGAAGTTCAGTCAGCAGTATAAAGCTACAATAGGTGCAGATTTTGTCACCAAAGAACTCCAGATTGATGACCGGCTCGTTACGCTACAAATATGGGACACGGCTGGGCAGGAAAGGTTTCAAAGTCTTGGAGTTGCGTTCTATAGAGGGGCGGATTGCTGTGTTCTAGTTTATGATGTTAATGTAATGAAGTCCTTTGATACTCTTGAGAATTGGCACGAGGAGTTTCTTAAGCAGGCGAACCCTCCTGATCCCAAGACTTTTCCGTTTATATTGCTTGGTAACAAGATTGATATTGATGGTGGGAATAGTCGTGTGGTTTCCGAGAAGAAAGCAAAGGACTGGTGCGCATCAAAAGGGAACATACCTTACTTTGAGACATCAGCAAAAGAAGATTACAATGTTGACGCTGCATTCCTTTGTATCGCCAAGACTGCTCTTGCGAATGAACATGAGCAGGACATATATTTCCAGGGTGTCCCAGATGCTGTTCCAGAGTCTGATCAAAGAGGTGGTTGTGCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

206

Amino Acids

22.97

Weight (kDa)

5.44

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 135 5.8e-12 ADP-ribosylation factor family
Ras PF00071 10 - 176 5.9e-56 Ras family
Roc PF08477 10 - 128 6.8e-34 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 10 - 110 2.3e-07 50S ribosome-binding GTPase
Gtr1_RagA PF04670 10 - 128 4.8e-06 Gtr1/RagA G protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720
fragaria_vesca FvH4_2g12800
malus_domestica MD10G1038200.v1.1
prunus_persica Prupe.8G044200_v2.0.a1
pyrus_communis pycom05g02660 pycom10g02620
rosa_chinensis RchiOBHm_Chr6g0273691
rosa_laevigata RLG00000013599
rosa_multiflora Rmu_sc0021426.1_g000003
rosa_roxburghii Rroxscaffold_7G00195120
rosa_rugosa Rorug06G0077300
rosa_samantha Rh6AG191600 Rh6BG195700 Rh6CG195200
rosa_wichuraiana Rw6G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 11, 439
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 335
AflII CTTAAG 2 cut(s) 26, 320
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 2 cut(s) 578, 590
ApeKI GCWGC 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 12, 440
AsuHPI GGTGA 1 cut(s) 130
BauI CACGAG 1 cut(s) 308
BbvI GCAGC 1 cut(s) 487
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 563
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 232
BfrI CTTAAG 2 cut(s) 26, 320
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme1390I CCNGG 1 cut(s) 563
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 2 cut(s) 449, 565
BpmI CTGGAG 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 562
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 437
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 562
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 2 cut(s) 200, 554
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 2 cut(s) 200, 554
BsmI GAATGC 1 cut(s) 503
Bsp143I GATC 2 cut(s) 340, 592
BspACI CCGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 335
BspTI CTTAAG 2 cut(s) 26, 320
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 2 cut(s) 340, 592
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 1 cut(s) 50
BstAFI CTTAAG 2 cut(s) 26, 320
BstC8I GCNNGC 2 cut(s) 327, 613
BstHHI GCGC 2 cut(s) 12, 440
BstKTI GATC 2 cut(s) 343, 595
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 340, 592
BstMWI GCNNNNNNNGC 2 cut(s) 172, 524
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 327, 613
CaiI CAGNNNCTG 2 cut(s) 578, 590
CfoI GCGC 2 cut(s) 12, 440
Cfr10I RCCGGY 1 cut(s) 162
CseI GACGC 1 cut(s) 506
CviAII CATG 2 cut(s) 542, 612
CviJI RGCY 3 cut(s) 116, 166, 194
CviKI_1 RGCY 3 cut(s) 116, 166, 194
DpnI GATC 2 cut(s) 342, 594
DpnII GATC 2 cut(s) 340, 592
EciI GGCGGA 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 561
FaeI CATG 2 cut(s) 545, 615
FaqI GGGAC 2 cut(s) 200, 554
FatI CATG 2 cut(s) 541, 611
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 501
FspAI RTGCGCAY 1 cut(s) 439
FspBI CTAG 1 cut(s) 257
FspI TGCGCA 2 cut(s) 11, 439
GlaI GCGC 2 cut(s) 11, 439
GluI GCNGC 1 cut(s) 501
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 506
HhaI GCGC 2 cut(s) 12, 440
Hin1II CATG 2 cut(s) 545, 615
Hin6I GCGC 2 cut(s) 10, 438
HinP1I GCGC 2 cut(s) 10, 438
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 1 cut(s) 587
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 2 cut(s) 415, 592
Hpy188III TCNNGA 4 cut(s) 151, 296, 338, 584
Hpy8I GTNNAC 1 cut(s) 496
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 88, 128, 503, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 524
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 2 cut(s) 545, 615
HspAI GCGC 2 cut(s) 10, 438
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 340, 592
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 2 cut(s) 449, 565
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 3 cut(s) 136, 169, 371
MalI GATC 2 cut(s) 342, 594
MboI GATC 2 cut(s) 340, 592
MboII GAAGA 2 cut(s) 430, 494
MluCI AATT 1 cut(s) 301
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 5 cut(s) 76, 230, 304, 345, 593
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 3 cut(s) 27, 270, 321
MspCI CTTAAG 2 cut(s) 26, 320
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 563
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 172, 524
NdeII GATC 2 cut(s) 340, 592
NlaIII CATG 2 cut(s) 545, 615
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 136
NsbI TGCGCA 2 cut(s) 11, 439
NspI RCATGY 1 cut(s) 615
PaeI GCATGC 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
PstNI CAGNNNCTG 2 cut(s) 578, 590
SaqAI TTAA 3 cut(s) 27, 270, 321
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 2 cut(s) 340, 592
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 563
SetI ASST 8 cut(s) 23, 33, 68, 118, 127, 209, 460, 604
SfaNI GCATC 2 cut(s) 449, 565
SfcI CTRYAG 1 cut(s) 232
SmlI CTYRAG 3 cut(s) 26, 296, 320
SmoI CTYRAG 3 cut(s) 26, 296, 320
SphI GCATGC 1 cut(s) 615
Sse9I AATT 1 cut(s) 301
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 561
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 23
TasI AATT 1 cut(s) 301
Tru1I TTAA 3 cut(s) 27, 270, 321
Tru9I TTAA 3 cut(s) 27, 270, 321
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 89, 293, 552
TspGWI ACGGA 2 cut(s) 31, 345
TspRI CASTG 1 cut(s) 55
Vha464I CTTAAG 2 cut(s) 26, 320
XceI RCATGY 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.