pycom05g02660

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010685
Physical Location & Seq
Forward (+)
3145708 .. 3149144
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02660.5

Sequence Viewer

Length: 624 bp
ATGTCATTGCGCAGACGAACCTTGCTCAAGGTCATCGTTCTCGGCGACAGTGGGGTTGGCAAGACCTCGTTGATGAACCAATATGTGCACAAGAAGTTTAGTCAGCAGTATAAAGCTACAATCGGTGCCGATTTTGTCACGAAAGAACTCCAAATCGATGACAGGCTCGTCACTCTACAAATTTGGGACACAGCCGGGCAGGAAAGATTTCAGAGTCTTGGAGTTTCATTTTACAGAGGTGCAGATTGCTGTGTTCTTGTTTATGATGTCAACGTAATGAAGTCCTTTGATACTCTAGATAATTGGCATGAGGAGTTTCTAAAGCAGGCAAACCCTCCCGATCCCAAGACATTTCCATTTATATTGCTTGGTAACAAGATTGATATTGATGGGGGTAACAGTCGTGTGGTGTCTGAGAAGAAAGCAAAGGACTGGTGTGCAGCAAAGGGGAATATACCTTACTTTGAGACATCAGCAAAAGAAGATTACAACGTTGATGGTGCATTTCTTTGTATTGCAAAGACTGCTCTTGCAAATGAACATGAGCAGGACATATATTTCCAGGGCATCCCTGATGCTGTTTCAGAGTCTGATCAAAGAGGAGGAGGTGGCTGTGCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

208

Amino Acids

23.08

Weight (kDa)

5.43

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720
fragaria_vesca FvH4_2g12800
malus_domestica MD10G1038200.v1.1
prunus_persica Prupe.8G044200_v2.0.a1
pyrus_communis pycom05g02660 pycom10g02620
rosa_chinensis RchiOBHm_Chr6g0273691
rosa_laevigata RLG00000013599
rosa_multiflora Rmu_sc0021426.1_g000003
rosa_roxburghii Rroxscaffold_7G00195120
rosa_rugosa Rorug06G0077300
rosa_samantha Rh6AG191600 Rh6BG195700 Rh6CG195200
rosa_wichuraiana Rw6G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
Acc16I TGCGCA 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 125
AclI AACGTT 1 cut(s) 492
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 180
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 461
Alw44I GTGCAC 1 cut(s) 86
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 590
ApaLI GTGCAC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 90
BanI GGYRCC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 452
BccI CCATC 2 cut(s) 383, 491
BciT130I CCWGG 1 cut(s) 563
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 196, 563
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 196, 563
BmsI GCATC 2 cut(s) 565, 576
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 5
BseBI CCWGG 1 cut(s) 563
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 1 cut(s) 567
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 3 cut(s) 326, 615, 618
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 1 cut(s) 452
BsgI GTGCAG 2 cut(s) 261, 459
BshNI GGYRCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 340, 592
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 2 cut(s) 340, 592
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 50, 401
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 327, 619
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 567
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 2 cut(s) 343, 595
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 340, 592
BstMWI GCNNNNNNNGC 2 cut(s) 524, 618
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 194, 561
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 452
Bsu15I ATCGAT 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 327, 619
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 156
CviAII CATG 3 cut(s) 308, 542, 618
CviJI RGCY 4 cut(s) 116, 166, 194, 612
CviKI_1 RGCY 4 cut(s) 116, 166, 194, 612
DdeI CTNAG 1 cut(s) 414
DpnI GATC 2 cut(s) 342, 594
DpnII GATC 2 cut(s) 340, 592
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 561
FaeI CATG 3 cut(s) 311, 545, 621
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 307, 541, 617
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 296
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 441
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 12
Hin1II CATG 3 cut(s) 311, 545, 621
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 214, 587
HpaII CCGG 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 88, 271
Hpy188I TCNGA 4 cut(s) 213, 415, 586, 592
Hpy188III TCNNGA 3 cut(s) 139, 296, 338
Hpy8I GTNNAC 2 cut(s) 88, 271
HpyCH4III ACNGT 2 cut(s) 50, 401
HpyCH4IV ACGT 2 cut(s) 273, 492
HpyCH4V TGCA 7 cut(s) 88, 242, 440, 503, 518, 533, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 618
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 2 cut(s) 273, 492
Hsp92II CATG 3 cut(s) 311, 545, 621
HspAI GCGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 340, 592
LpnPI CCDG 9 cut(s) 148, 185, 208, 311, 418, 533, 548, 575, 585
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 2 cut(s) 565, 576
MaeI CTAG 1 cut(s) 296
MaeII ACGT 2 cut(s) 273, 492
MaeIII GTNAC 4 cut(s) 136, 169, 371, 395
MalI GATC 2 cut(s) 342, 594
MboI GATC 2 cut(s) 340, 592
MboII GAAGA 2 cut(s) 430, 494
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 2 cut(s) 180, 301
MlyI GAGTC 2 cut(s) 223, 596
MnlI CCTC 7 cut(s) 76, 230, 304, 345, 593, 596, 599
MroXI GAANNNNTTC 1 cut(s) 207
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 196, 563
MvaI CCWGG 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 524, 618
NciI CCSGG 1 cut(s) 196
NdeII GATC 2 cut(s) 340, 592
NlaIII CATG 3 cut(s) 311, 545, 621
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 136, 169
NsbI TGCGCA 1 cut(s) 11
NspI RCATGY 1 cut(s) 621
PaeI GCATGC 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 2 cut(s) 222, 595
PpsI GAGTC 2 cut(s) 222, 595
Psp1406I AACGTT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 590
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 2 cut(s) 340, 592
SchI GAGTC 2 cut(s) 223, 596
ScrFI CCNGG 2 cut(s) 196, 563
SduI GDGCHC 1 cut(s) 90
SetI ASST 9 cut(s) 23, 33, 68, 118, 241, 276, 460, 495, 610
SfaNI GCATC 2 cut(s) 565, 576
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SphI GCATGC 1 cut(s) 621
Sse9I AATT 2 cut(s) 180, 301
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 194, 561
TaaI ACNGT 2 cut(s) 50, 401
TaiI ACGT 2 cut(s) 276, 495
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 180, 301
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 136, 169
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 136, 169
TspDTI ATGAA 4 cut(s) 89, 216, 293, 552
TspRI CASTG 1 cut(s) 55
VneI GTGCAC 1 cut(s) 86
XapI RAATTY 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.