Rmu_sc0021426.1_g000003

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021426.1
OG0010685
Physical Location & Seq
Reverse (-)
7712 .. 11801
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021426.1_g000003.1.cds

Sequence Viewer

Length: 618 bp
atgtcattgcgcagacggaccttgctcaaggtcatcgttctcggcgacagtggggttggcaagacgtcgttgatgaaccaatatgtgcataagaagttcagtcagcagtataaagctacaataggtgcagactttgtcaccaaagaactccaaattgatgacaggcttgttaccctacagatatgggacacggctgggcaggaaagatttcaaagtcttggagttgcattctatagaggggcagattgctgtgttctagtttatgatgttaatgtaatgaagtcctttgatactcttgataactggcacgaggagtttctcaagcaggccaaccctgctgatcccaagacatttccgtttatattacttggtaacaagattgatattgatggtgggaatagtcgtgtggtttctgagaagaaagcaaaggactggtgtgcatcaaaggggaacataccttactttgagacatcagcaaaagaagattacaatgttgacgcagcattcctttgtattgccaaaactgctcttgcaaatgaacatgagcaggacatatatttccagggcatcccggatgctgtttcagagtctgatcaaagaggtcgttgtgcatgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

205

Amino Acids

23.05

Weight (kDa)

5.66

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720
fragaria_vesca FvH4_2g12800
malus_domestica MD10G1038200.v1.1
prunus_persica Prupe.8G044200_v2.0.a1
pyrus_communis pycom05g02660 pycom10g02620
rosa_chinensis RchiOBHm_Chr6g0273691
rosa_laevigata RLG00000013599
rosa_multiflora Rmu_sc0021426.1_g000003
rosa_roxburghii Rroxscaffold_7G00195120
rosa_rugosa Rorug06G0077300
rosa_samantha Rh6AG191600 Rh6BG195700 Rh6CG195200
rosa_wichuraiana Rw6G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
Acc16I TGCGCA 1 cut(s) 11
AclWI GGATC 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 65
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 308
BbvI GCAGC 1 cut(s) 512
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 563
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 2 cut(s) 176, 232
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 563, 572
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 563, 572
BmsI GCATC 3 cut(s) 449, 565, 576
BpuEI CTTGAG 2 cut(s) 11, 305
BpuMI CCSGG 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 562
Bse1I ACTGG 2 cut(s) 308, 437
Bse3DI GCAATG 1 cut(s) 5
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 2 cut(s) 567, 580
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 308, 437
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 512
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 227, 503
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 340, 592
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 2 cut(s) 308, 437
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 2 cut(s) 340, 592
BssNI GRCGYC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 327, 613
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 567, 580
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 2 cut(s) 343, 595
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 340, 592
BstMWI GCNNNNNNNGC 2 cut(s) 335, 524
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 2 cut(s) 561, 570
BstSFI CTRYAG 2 cut(s) 176, 232
BstV1I GCAGC 1 cut(s) 512
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 2 cut(s) 567, 580
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 327, 613
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 18
CseI GACGC 1 cut(s) 506
CviAII CATG 2 cut(s) 542, 612
CviJI RGCY 4 cut(s) 116, 166, 194, 329
CviKI_1 RGCY 4 cut(s) 116, 166, 194, 329
DdeI CTNAG 1 cut(s) 414
DpnI GATC 2 cut(s) 342, 594
DpnII GATC 2 cut(s) 340, 592
Eco47I GGWCC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 561
FaeI CATG 2 cut(s) 545, 615
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 541, 611
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 2 cut(s) 554, 587
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 1 cut(s) 257
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 501
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 572
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 545, 615
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 1 cut(s) 587
HpaII CCGG 1 cut(s) 572
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 3 cut(s) 415, 586, 592
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 6 cut(s) 88, 128, 227, 440, 533, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 524
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 545, 615
HspAI GCGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 340, 592
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 3 cut(s) 449, 565, 576
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 136, 169, 371
MalI GATC 2 cut(s) 342, 594
MboI GATC 2 cut(s) 340, 592
MboII GAAGA 2 cut(s) 430, 494
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 3 cut(s) 230, 304, 593
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 2 cut(s) 563, 572
Mva1269I GAATGC 2 cut(s) 227, 503
MvaI CCWGG 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 335, 524
NciI CCSGG 1 cut(s) 572
NdeII GATC 2 cut(s) 340, 592
NlaIII CATG 2 cut(s) 545, 615
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 11
NspI RCATGY 1 cut(s) 615
PaeI GCATGC 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 2 cut(s) 227, 503
PdmI GAANNNNTTC 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 561
PspPI GGNCC 1 cut(s) 18
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
PstNI CAGNNNCTG 1 cut(s) 590
PsyI GACNNNGTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 2 cut(s) 340, 592
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 2 cut(s) 563, 572
SetI ASST 7 cut(s) 23, 33, 68, 118, 127, 460, 604
SfaNI GCATC 3 cut(s) 449, 565, 576
SfcI CTRYAG 2 cut(s) 176, 232
SinI GGWCC 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 26, 320
SmoI CTYRAG 2 cut(s) 26, 320
SphI GCATGC 1 cut(s) 615
Sse9I AATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 561, 570
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 68
TasI AATT 1 cut(s) 153
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 89, 293, 552
TspGWI ACGGA 2 cut(s) 31, 345
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 18
XceI RCATGY 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.