Prupe.8G044200_v2.0.a1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010685
Physical Location & Seq
Forward (+)
4560523 .. 4564841
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G044200.1

Sequence Viewer

Length: 618 bp
ATGTCATTGCGTAGACGAACTTTGCTCAAGGTCATCGTTCTCGGCGACAGTGGGGTTGGCAAGACGTCGTTGATGAACCAATATGTGCATAAGAAGTTCAGTCAGCAGTATAAAGCTACAATAGGTGCCGATTTTGTCACGAAAGAACTCCAAATTGATGACAGGCTCGTCACTTTACAAATTTGGGACACAGCTGGGCAGGAAAGATTTCAGAGTCTTGGAGTTGCATTTTACAGGGGGGCAGATTGCTGTGTTTTAGTTTATGACGTTAATGTAATGAAGTCCTTTGATACTCTTGAGAATTGGCACGAGGAGTTTCTCAAGCAGGCCAACCCTCCGGATCCCAAGACATTTCCGTTTATATTGCTTGGTAACAAGATTGATATTGATGGGGGGAATAGTCGCGTGGTTTCTGAGAAGAAAGCAAAGGACTGGTGCACATCAAAGGGGAATATTCCTTACTTTGAGACATCAGCAAAAGAAGATTACAATGTTGATGCTGCATTCCTTTGTATTGCGAAGACTGCTCTTGCAAATGAACATGAGCAGGACATATATTTCCAAGGCATCCCAGAGGCTGTTTCAGAGTCTGATCAAAGAGGGGGTTGTGCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

206

Amino Acids

23.04

Weight (kDa)

5.45

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720
fragaria_vesca FvH4_2g12800
malus_domestica MD10G1038200.v1.1
prunus_persica Prupe.8G044200_v2.0.a1
pyrus_communis pycom05g02660 pycom10g02620
rosa_chinensis RchiOBHm_Chr6g0273691
rosa_laevigata RLG00000013599
rosa_multiflora Rmu_sc0021426.1_g000003
rosa_roxburghii Rroxscaffold_7G00195120
rosa_rugosa Rorug06G0077300
rosa_samantha Rh6AG191600 Rh6BG195700 Rh6CG195200
rosa_wichuraiana Rw6G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AatII GACGTC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 337
AclWI GGATC 2 cut(s) 335, 348
AcsI RAATTY 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 65
AluBI AGCT 2 cut(s) 116, 194
AluI AGCT 2 cut(s) 116, 194
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 1 cut(s) 461
Alw44I GTGCAC 1 cut(s) 436
AlwI GGATC 2 cut(s) 335, 348
AlwNI CAGNNNCTG 2 cut(s) 578, 590
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 1 cut(s) 327
ApaLI GTGCAC 1 cut(s) 436
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 440
BamHI GGATCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 125
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 487
BccI CCATC 1 cut(s) 383
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 461
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
BmiI GGNNCC 2 cut(s) 127, 342
BmsI GCATC 2 cut(s) 487, 576
BpiI GAAGAC 1 cut(s) 527
BpuEI CTTGAG 3 cut(s) 11, 305, 317
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 562
BsaWI WCCGGW 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 5
BseAI TCCGGA 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 1 cut(s) 567
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 440
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 2 cut(s) 340, 592
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 406
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 127, 342
BspPI GGATC 2 cut(s) 335, 348
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 2 cut(s) 340, 592
BssNI GRCGYC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 562
Bst2BI CACGAG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 327, 613
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 567
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 2 cut(s) 343, 595
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 340, 592
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 440
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 487
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 327, 613
CaiI CAGNNNCTG 2 cut(s) 578, 590
CviAII CATG 2 cut(s) 542, 612
CviJI RGCY 5 cut(s) 116, 166, 194, 329, 578
CviKI_1 RGCY 5 cut(s) 116, 166, 194, 329, 578
DdeI CTNAG 1 cut(s) 414
DpnI GATC 2 cut(s) 342, 594
DpnII GATC 2 cut(s) 340, 592
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 562
FaeI CATG 2 cut(s) 545, 615
FaiI YATR 9 cut(s) 84, 90, 111, 264, 362, 543, 554, 556, 613
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 541, 611
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 1 cut(s) 501
GluI GCNGC 1 cut(s) 501
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 545, 615
HinfI GANTC 2 cut(s) 214, 587
HpaII CCGG 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 14, 438
Hpy188I TCNGA 4 cut(s) 213, 415, 586, 592
Hpy188III TCNNGA 3 cut(s) 139, 296, 338
Hpy8I GTNNAC 2 cut(s) 14, 438
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 2 cut(s) 65, 267
HpyCH4V TGCA 6 cut(s) 88, 227, 438, 503, 533, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 2 cut(s) 65, 267
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 545, 615
Kpn2I TCCGGA 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 340, 592
LpnPI CCDG 9 cut(s) 148, 180, 185, 220, 311, 351, 418, 533, 585
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 2 cut(s) 487, 576
MaeII ACGT 2 cut(s) 65, 267
MaeIII GTNAC 3 cut(s) 136, 169, 371
MalI GATC 2 cut(s) 342, 594
MboI GATC 2 cut(s) 340, 592
MboII GAAGA 3 cut(s) 430, 494, 532
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 3 cut(s) 153, 180, 301
MlyI GAGTC 2 cut(s) 223, 596
MnlI CCTC 4 cut(s) 304, 345, 568, 593
MroI TCCGGA 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 503
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 524
NdeII GATC 2 cut(s) 340, 592
NlaIII CATG 2 cut(s) 545, 615
NlaIV GGNNCC 2 cut(s) 127, 342
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 136, 169
NspI RCATGY 1 cut(s) 615
PaeI GCATGC 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 2 cut(s) 222, 595
PpsI GAGTC 2 cut(s) 222, 595
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 127, 342
PstNI CAGNNNCTG 2 cut(s) 578, 590
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 2 cut(s) 340, 592
SchI GAGTC 2 cut(s) 223, 596
SduI GDGCHC 1 cut(s) 440
SetI ASST 6 cut(s) 33, 68, 118, 127, 196, 270
SfaNI GCATC 2 cut(s) 487, 576
SmlI CTYRAG 3 cut(s) 26, 296, 320
SmoI CTYRAG 3 cut(s) 26, 296, 320
SphI GCATGC 1 cut(s) 615
Sse9I AATT 3 cut(s) 153, 180, 301
SspI AATATT 1 cut(s) 454
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 2 cut(s) 68, 270
TasI AATT 3 cut(s) 153, 180, 301
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 136, 169
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 2 cut(s) 136, 169
TspDTI ATGAA 3 cut(s) 89, 293, 552
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 55
VneI GTGCAC 1 cut(s) 436
XapI RAATTY 1 cut(s) 180
XceI RCATGY 1 cut(s) 615
XmiI GTMKAC 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 207
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.