Rh6BG195700

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010685
Physical Location & Seq
Reverse (-)
36777651 .. 36782025
4375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG195700.1

Sequence Viewer

Length: 558 bp
ATGTCATTGCGCAGACGGACCTTGCTCAAGGTCATCGTTCTCGGCGACAGTGGGGTTGGCAAGACGTCGTTGATGAACCAATATGTGCATAAGAAGTTCAGTCAGCAGTATAAAGCTACAATAGGTGCAGACTTCGTCACCAAAGAACTCCAAATTGATGACAGGCTTGTTACCCTACAGATATGGGACACGGCTGGGCAGGAAAGATTTCAAAGTCTTGGAGTTGCGTTCTATAGAGGGGCAGATTGCTGTGTTCTAGTTTATGATGTTAATGTAATGAAGTCCTTTGATACTCTTGATAACTGGCACGAGGAGTTTCTCAAGCAGGCCAACCCTGCTGATCCCAAGACATTTCCGTTTATATTGCTTGGTAACAAGATTGATATCGATGGTGGGAATAGTCGTGTGGTTTCTGAGAAGAAAGCAAAGGACTGGTGTGCATCAAAGGGGAACATACCCTACTTTGAGACATCAGCAAAAGAAGATTACAATGTTGACGCAGCATTCCTTTGTATTGCCAAGACTGCTCTTGCAAATGAACATGAGCAGGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

185

Amino Acids

20.88

Weight (kDa)

5.93

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 135 2.6e-12 ADP-ribosylation factor family
Ras PF00071 10 - 176 6.1e-56 Ras family
Roc PF08477 10 - 128 5.4e-34 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 10 - 109 1.1e-07 50S ribosome-binding GTPase
Gtr1_RagA PF04670 10 - 129 2.2e-06 Gtr1/RagA G protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720 AT4G09720
fragaria_vesca FvH4_2g12800
malus_domestica MD10G1038200.v1.1
prunus_persica Prupe.8G044200_v2.0.a1
pyrus_communis pycom05g02660 pycom10g02620
rosa_chinensis RchiOBHm_Chr6g0273691
rosa_laevigata RLG00000013599
rosa_multiflora Rmu_sc0021426.1_g000003
rosa_roxburghii Rroxscaffold_7G00195120
rosa_rugosa Rorug06G0077300
rosa_samantha Rh6AG191600 Rh6BG195700 Rh6CG195200
rosa_wichuraiana Rw6G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
Acc16I TGCGCA 1 cut(s) 11
AclWI GGATC 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 335
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 308
BbvI GCAGC 1 cut(s) 512
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 2 cut(s) 176, 232
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 449
BpuEI CTTGAG 2 cut(s) 11, 305
Bsa29I ATCGAT 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 308, 437
Bse3DI GCAATG 1 cut(s) 5
Bse8I GATNNNNATC 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 387
BseJI GATNNNNATC 1 cut(s) 383
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 308, 437
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 512
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 387
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 340
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 387
BspPI GGATC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 2 cut(s) 308, 437
BssMI GATC 1 cut(s) 340
BssNI GRCGYC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 335, 524
BstNSI RCATGY 1 cut(s) 556
BstSFI CTRYAG 2 cut(s) 176, 232
BstV1I GCAGC 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 1 cut(s) 329
BsuTUI ATCGAT 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 327
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 506
CviAII CATG 2 cut(s) 542, 553
CviJI RGCY 4 cut(s) 116, 166, 194, 329
CviKI_1 RGCY 4 cut(s) 116, 166, 194, 329
DdeI CTNAG 1 cut(s) 414
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 18
EcoRV GATATC 1 cut(s) 385
FaeI CATG 2 cut(s) 545, 556
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 541, 552
Fnu4HI GCNGC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 1 cut(s) 257
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 501
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 329
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 545, 556
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 88, 128, 440, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 524
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 545, 556
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 8 cut(s) 148, 180, 185, 289, 311, 348, 418, 533
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 1 cut(s) 449
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 136, 169, 371
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 2 cut(s) 430, 494
MluCI AATT 1 cut(s) 153
MnlI CCTC 2 cut(s) 230, 304
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 335, 524
NdeII GATC 1 cut(s) 340
NlaIII CATG 2 cut(s) 545, 556
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 11
NspI RCATGY 1 cut(s) 556
PciI ACATGT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 502
PscI ACATGT 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 18
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
PsyI GACNNNGTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 1 cut(s) 18
SetI ASST 5 cut(s) 23, 33, 68, 118, 127
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 2 cut(s) 176, 232
SinI GGWCC 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 26, 320
SmoI CTYRAG 2 cut(s) 26, 320
Sse9I AATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 387
TasI AATT 1 cut(s) 153
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 89, 293, 552
TspGWI ACGGA 2 cut(s) 31, 345
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 18
XceI RCATGY 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.