Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013351

Physical Location & Seq

Genomic Coordinates Reverse (-)

13079568 .. 13081727

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTTGGAAAACTGCTTGCAACTGAGCACAGTGTGCACTACTAGGGTTGGTGCTGCACAATGCTACCATCCATTTTCTTCAGAGAAGCTTGTTGTGCCGACTTGTAATGGATTGAGGAAGTCTGGTTTGAAATTCTCCTCATCTTCCTCATTCGTTGCCCGTCCTAAAAGCACTAGACTCCAGAAGTCTGGCTTTGTTTGCAAAGCTCGTGAAGCTGTGGATCAAGTTCAAGTGGTGACAGATTCAAGCTGGAACAACCTTGTCATTGCAAGTGAGAACCCGGTTCTGGTGGAGTTTTGGGCACCATGGTGTGGACCATGCCGGATGATTGCTCCGGTAATCGACGAGTTGGCCAAAGAATATGCTGGGAAGATAAGCTGCTTCAAGCTCAACACTGATGACAGCCCCAACACTGCCACTCAATATGGCATAAGGAGCATTCCAACTGTGCTCTTCTTCAAAAATGGAGAGAAGAAAGAAAGTGTTATTGGTGCAGTACCCAAGTCCACCTTGTCTGCTACCATAGAAAAATATGTAGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009657 GO:0009987 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

183

Amino Acids

19.89

Weight (kDa)

8.78

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	77 - 178	1.6e-32	Thioredoxin
Thioredoxin_9	PF14595	89 - 171	6.3e-07	Thioredoxin
Thioredoxin_2	PF13098	92 - 174	1.4e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03520
fragaria_vesca	FvH4_2g14900
malus_domestica	MD05G1011900.v1.1 MD10G1011900.v1.1
prunus_persica	Prupe.8G016900_v2.0.a1
pyrus_communis	pycom05g00690 pycom10g00750
rosa_chinensis	RchiOBHm_Chr6g0277471
rosa_laevigata	RLG00000013298
rosa_multiflora	Rmu_sc0003910.1_g000011 Rmu_sc0017670.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191280
rosa_rugosa	Rorug06G0108600
rosa_samantha	Rh6AG219400 Rh6BG223300 Rh6CG225800 Rh6DG216100
rosa_wichuraiana	Rw6G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	314
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	289, 314
AgsI	TTSAA	5 cut(s)	133, 233, 249, 388, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AleI	CACNNNNGTG	1 cut(s)	310
AluBI	AGCT	6 cut(s)	91, 209, 218, 252, 381, 391
AluI	AGCT	6 cut(s)	91, 209, 218, 252, 381, 391
Alw21I	GWGCWC	3 cut(s)	32, 41, 456
Alw44I	GTGCAC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	56, 381
ApoI	RAATTY	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	2 cut(s)	41, 307
BalI	TGGCCA	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	210
Bbv12I	GWGCWC	3 cut(s)	32, 41, 456
BbvI	GCAGC	2 cut(s)	43, 368
BccI	CCATC	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	284
BfaI	CTAG	2 cut(s)	45, 177
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	2 cut(s)	57, 382
BlsI	GCNGC	2 cut(s)	58, 383
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 314
Bse3DI	GCAATG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	2 cut(s)	70, 333
BseLI	CCNNNNNNNGG	2 cut(s)	289, 314
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	2 cut(s)	41, 307
BseXI	GCAGC	2 cut(s)	43, 368
BseYI	CCCAGC	1 cut(s)	368
BsgI	GTGCAG	2 cut(s)	42, 516
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	3 cut(s)	32, 41, 456
BsiSI	CCGG	3 cut(s)	284, 325, 338
BslI	CCNNNNNNNGG	2 cut(s)	289, 314
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	4 cut(s)	32, 41, 307, 456
Bsp143I	GATC	2 cut(s)	223, 541
Bsp19I	CCATGG	1 cut(s)	308
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	231
BspQI	GCTCTTC	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	223, 541
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	34, 451
Bst6I	CTCTTC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	70, 333
BstKTI	GATC	2 cut(s)	226, 544
BstMBI	GATC	2 cut(s)	223, 541
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 97, 201, 215, 438
BstSCI	CCNGG	1 cut(s)	282
BstSLI	GKGCMC	2 cut(s)	41, 307
BstV1I	GCAGC	2 cut(s)	43, 368
BstX2I	RGATCY	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	70, 333
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	39, 396, 414
Cac8I	GCNNGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	2 cut(s)	309, 321
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	2 cut(s)	225, 543
DpnII	GATC	2 cut(s)	223, 541
DraIII	CACNNNGTG	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	312, 324
FaiI	YATR	7 cut(s)	310, 322, 366, 429, 434, 527, 537
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 497, 529
FatI	CATG	2 cut(s)	308, 320
Fnu4HI	GCNGC	2 cut(s)	57, 382
FokI	GGATG	2 cut(s)	57, 340
Fsp4HI	GCNGC	2 cut(s)	57, 382
FspBI	CTAG	2 cut(s)	45, 177
GluI	GCNGC	2 cut(s)	57, 382
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	3 cut(s)	284, 325, 338
Hin1II	CATG	2 cut(s)	312, 324
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	180, 245
HpaII	CCGG	3 cut(s)	284, 325, 338
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	39, 317, 510
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	184, 212
Hpy8I	GTNNAC	3 cut(s)	39, 317, 510
Hpy99I	CGWCG	1 cut(s)	350
HpyCH4III	ACNGT	2 cut(s)	34, 451
HpyCH4V	TGCA	6 cut(s)	22, 39, 59, 204, 272, 497
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 97, 201, 215, 438
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	312, 324
Kzo9I	GATC	2 cut(s)	223, 541
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	340, 438
LpnPI	CCDG	9 cut(s)	111, 177, 197, 238, 275, 297, 338, 351, 354
Lsp1109I	GCAGC	2 cut(s)	43, 368
MaeI	CTAG	2 cut(s)	45, 177
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	225, 543
MboI	GATC	2 cut(s)	223, 541
MboII	GAAGA	6 cut(s)	72, 138, 385, 448, 451, 487
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	4 cut(s)	32, 41, 307, 456
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	3 cut(s)	111, 151, 160
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	547
MslI	CAYNNNNRTG	1 cut(s)	310
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	3 cut(s)	284, 325, 338
MspR9I	CCNGG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	441
MwoI	GCNNNNNNNGC	5 cut(s)	36, 97, 201, 215, 438
NciI	CCSGG	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	223, 541
NlaIII	CATG	2 cut(s)	312, 324
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	461
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	58, 383
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	2 cut(s)	57, 382
Sau3AI	GATC	2 cut(s)	223, 541
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	4 cut(s)	32, 41, 307, 456
SetI	ASST	8 cut(s)	93, 211, 220, 254, 264, 383, 393, 515
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	310
Sse9I	AATT	1 cut(s)	134
SspMI	CTAG	2 cut(s)	45, 177
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	34, 451
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TscAI	CASTG	3 cut(s)	39, 403, 421
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	56, 381
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	3 cut(s)	39, 403, 421
Van91I	CCANNNNNTGG	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	134
XspI	CTAG	2 cut(s)	45, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.