Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013351

Physical Location & Seq

Genomic Coordinates Reverse (-)

38434116 .. 38435405

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTTTGGAAAACTGCTTGCAACTAAGCACAGTGTGCAGTACTAGGGTTGGTGCTGCACAATGCTACCAGCCATTTTCTTCTAAAGAGAAGCTTATTGTGCCAACTTGTAATGGATTGAGGAAGTCTGGTTTGAAGTTCTCCTCATCTTCATCCTTCGTCGCCCTTCAAGTGGTGACAGATTCAAGCTGGAATAACCTTGTCATTGCAAGTGAGAACCCAGTTCTGGTGGAGTTTTGGGCACCATGGTGTGGACCATGCCGGATGATTGCTCCCCCCAACACTGCCACTCAATATGGCATAAGGAGTATTCCAACTGTGCTCTTCTTCAAAGGTGGAGAGAAGAAAGAAAGTGTTATTGGTGCAGTGCCCAAGTCCACCTTGTCTGCTACCATAGAAAAATATGTAGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009657 GO:0009987 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

138

Amino Acids

14.94

Weight (kDa)

8.8

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	57 - 92	4.2e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03520
fragaria_vesca	FvH4_2g14900
malus_domestica	MD05G1011900.v1.1 MD10G1011900.v1.1
prunus_persica	Prupe.8G016900_v2.0.a1
pyrus_communis	pycom05g00690 pycom10g00750
rosa_chinensis	RchiOBHm_Chr6g0277471
rosa_laevigata	RLG00000013298
rosa_multiflora	Rmu_sc0003910.1_g000011 Rmu_sc0017670.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191280
rosa_rugosa	Rorug06G0108600
rosa_samantha	Rh6AG219400 Rh6BG223300 Rh6CG225800 Rh6DG216100
rosa_wichuraiana	Rw6G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	251
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	172, 226, 251
AgsI	TTSAA	4 cut(s)	136, 170, 186, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	94, 189
AluI	AGCT	2 cut(s)	94, 189
Alw21I	GWGCWC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	2 cut(s)	244, 372
BanI	GGYRCC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmcAI	AGTACT	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 226, 251
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	152, 270
BseLI	CCNNNNNNNGG	3 cut(s)	172, 226, 251
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	133
BseSI	GKGCMC	2 cut(s)	244, 372
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	3 cut(s)	42, 58, 384
BshNI	GGYRCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	172, 226, 251
Bsp1286I	GDGCHC	3 cut(s)	244, 324, 372
Bsp143I	GATC	1 cut(s)	409
Bsp19I	CCATGG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	34, 319
Bst6I	CTCTTC	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	152, 270
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 100
BstSLI	GKGCMC	2 cut(s)	244, 372
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	152, 270
BtsI	GCAGTG	2 cut(s)	282, 372
BtsIMutI	CAGTG	3 cut(s)	39, 282, 372
Cac8I	GCNNGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	246, 258
CviJI	RGCY	4 cut(s)	5, 73, 94, 189
CviKI_1	RGCY	4 cut(s)	5, 73, 94, 189
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraIII	CACNNNGTG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	2 cut(s)	249, 261
FaiI	YATR	6 cut(s)	247, 259, 297, 302, 395, 405
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 365, 397
FatI	CATG	2 cut(s)	245, 257
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	139, 277
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	57
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	2 cut(s)	249, 261
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	254, 378
Hpy8I	GTNNAC	2 cut(s)	254, 378
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	166, 176
HpyCH4III	ACNGT	2 cut(s)	34, 319
HpyCH4V	TGCA	5 cut(s)	22, 39, 59, 209, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 100
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	249, 261
Kzo9I	GATC	1 cut(s)	409
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	6 cut(s)	83, 114, 175, 212, 234, 275
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	5 cut(s)	72, 141, 316, 319, 355
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	3 cut(s)	244, 324, 372
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	2 cut(s)	114, 154
MseI	TTAA	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	247
MspI	CCGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	36, 100
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	2 cut(s)	249, 261
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	43
SduI	GDGCHC	3 cut(s)	244, 324, 372
SetI	ASST	5 cut(s)	96, 191, 201, 337, 383
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	247
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	34, 319
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	3 cut(s)	39, 289, 372
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	3 cut(s)	39, 289, 372
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	254
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.