Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013351

Physical Location & Seq

Genomic Coordinates Forward (+)

822497 .. 823542

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTTGGAGAACTGCTTGCAGCTAAGCACAGTGTGCACTACAAGAGTTGGTGCTGCCGCACACCATCCATTTTCTTCCACGGACAAGTTTGTTGTGCCAACTTCCAATGGATTGAAGAAATCTGCTTTGAAATTCTCTTCATCATCCTCATCGTTTTCTCGTTCCGGCAAATCACAGAAATCTCGCTTTATTTGCAAAGCTCGTGAAGCTGTCAATGAAGTTCAAGTGGTGAATGATTCAAGTTGGAATACTCTTGTGATTGCAAGTGAGAACCCAGTTCTGGTGGAGTTTTGGGCACCGTGGTGTGGACCGTGCCGGATGATTGCGCCGGTGATCGATGAATTGGCAAAAGAGTACGCCGGAAAGATATCTTGTTTCAAGCTCAACACAGATGAGAGCCCCAACACTGCCACTCAGTACGGTATAAGGAGCATACCAACGGTGCTCTTCTTCAAGAACGGGGAGAAGAAAGAGAGCGTTATTGGTGCAGTGCCAAAGTCCACATTGTCTGCAACCATTGAAAAATATGTCGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009657 GO:0009987 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

181

Amino Acids

19.6

Weight (kDa)

8.9

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03520
fragaria_vesca	FvH4_2g14900
malus_domestica	MD05G1011900.v1.1 MD10G1011900.v1.1
prunus_persica	Prupe.8G016900_v2.0.a1
pyrus_communis	pycom05g00690 pycom10g00750
rosa_chinensis	RchiOBHm_Chr6g0277471
rosa_laevigata	RLG00000013298
rosa_multiflora	Rmu_sc0003910.1_g000011 Rmu_sc0017670.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191280
rosa_rugosa	Rorug06G0108600
rosa_samantha	Rh6AG219400 Rh6BG223300 Rh6CG225800 Rh6DG216100
rosa_wichuraiana	Rw6G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AciI	CCGC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	359, 422
AfiI	CCNNNNNNNGG	2 cut(s)	283, 308
AgsI	TTSAA	7 cut(s)	118, 133, 227, 243, 382, 457, 524
AleI	CACNNNNGTG	1 cut(s)	304
AluBI	AGCT	4 cut(s)	25, 203, 212, 385
AluI	AGCT	4 cut(s)	25, 203, 212, 385
Alw21I	GWGCWC	2 cut(s)	41, 450
Alw44I	GTGCAC	1 cut(s)	37
ApaLI	GTGCAC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	22, 56
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	244, 346
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	2 cut(s)	41, 301
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	41, 450
BbvI	GCAGC	2 cut(s)	34, 43
BccI	CCATC	1 cut(s)	75
BisI	GCNGC	3 cut(s)	23, 57, 60
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	24, 58, 61
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	81, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 308
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	81, 302
BseGI	GGATG	3 cut(s)	67, 146, 327
BseLI	CCNNNNNNNGG	2 cut(s)	283, 308
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	41, 301
BseXI	GCAGC	2 cut(s)	34, 43
BsgI	GTGCAG	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	41, 450
BsiSI	CCGG	4 cut(s)	168, 319, 332, 363
BslI	CCNNNNNNNGG	2 cut(s)	283, 308
Bsp1286I	GDGCHC	4 cut(s)	41, 301, 404, 450
Bsp143I	GATC	2 cut(s)	336, 535
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	430
BspDI	ATCGAT	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	81, 302
BssMI	GATC	2 cut(s)	336, 535
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	34, 303, 315, 425, 445
Bst6I	CTCTTC	2 cut(s)	145, 455
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	26, 417
BstDSI	CCRYGG	2 cut(s)	81, 302
BstF5I	GGATG	3 cut(s)	67, 146, 327
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	2 cut(s)	339, 538
BstMBI	GATC	2 cut(s)	336, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 195, 209
BstSLI	GKGCMC	2 cut(s)	41, 301
BstV1I	GCAGC	2 cut(s)	34, 43
Bsu15I	ATCGAT	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	2 cut(s)	81, 302
BtsCI	GGATG	3 cut(s)	67, 146, 327
BtsI	GCAGTG	2 cut(s)	408, 498
BtsIMutI	CAGTG	3 cut(s)	39, 408, 498
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	358, 421
CviJI	RGCY	6 cut(s)	5, 25, 203, 212, 385, 402
CviKI_1	RGCY	6 cut(s)	5, 25, 203, 212, 385, 402
CviQI	GTAC	2 cut(s)	358, 421
DdeI	CTNAG	2 cut(s)	26, 417
DpnI	GATC	2 cut(s)	338, 537
DpnII	GATC	2 cut(s)	336, 535
DraIII	CACNNNGTG	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	145, 455
EarI	CTCTTC	2 cut(s)	145, 455
Eco24I	GRGCYC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	404
FaiI	YATR	3 cut(s)	428, 437, 531
Fnu4HI	GCNGC	3 cut(s)	23, 57, 60
FokI	GGATG	3 cut(s)	54, 133, 334
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	3 cut(s)	23, 57, 60
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	3 cut(s)	23, 57, 60
HapII	CCGG	4 cut(s)	168, 319, 332, 363
HhaI	GCGC	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	4 cut(s)	168, 319, 332, 363
HphI	GGTGA	2 cut(s)	244, 346
Hpy166II	GTNNAC	3 cut(s)	39, 311, 504
Hpy188III	TCNNGA	2 cut(s)	206, 457
Hpy8I	GTNNAC	3 cut(s)	39, 311, 504
HpyCH4III	ACNGT	5 cut(s)	34, 303, 315, 425, 445
HpyCH4V	TGCA	6 cut(s)	22, 39, 198, 266, 491, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 195, 209
HpyF3I	CTNAG	2 cut(s)	26, 417
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	336, 535
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	432
LpnPI	CCDG	6 cut(s)	181, 269, 291, 332, 345, 376
Lsp1109I	GCAGC	2 cut(s)	34, 43
MalI	GATC	2 cut(s)	338, 537
MboI	GATC	2 cut(s)	336, 535
MboII	GAAGA	6 cut(s)	69, 130, 132, 442, 445, 481
MhlI	GDGCHC	4 cut(s)	41, 301, 404, 450
MluCI	AATT	2 cut(s)	134, 344
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	541
MslI	CAYNNNNRTG	1 cut(s)	304
MspI	CCGG	4 cut(s)	168, 319, 332, 363
MwoI	GCNNNNNNNGC	3 cut(s)	36, 195, 209
NdeII	GATC	2 cut(s)	336, 535
NlaIV	GGNNCC	1 cut(s)	300
OliI	CACNNNNGTG	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	24, 58, 61
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	311
RsaI	GTAC	2 cut(s)	359, 422
RsaNI	GTAC	2 cut(s)	358, 421
RseI	CAYNNNNRTG	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	541
SatI	GCNGC	3 cut(s)	23, 57, 60
Sau3AI	GATC	2 cut(s)	336, 535
Sau96I	GGNCC	1 cut(s)	311
SduI	GDGCHC	4 cut(s)	41, 301, 404, 450
SetI	ASST	4 cut(s)	27, 205, 214, 387
SgrAI	CRCCGGYG	1 cut(s)	331
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	134, 344
SsiI	CCGC	1 cut(s)	60
TaaI	ACNGT	5 cut(s)	34, 303, 315, 425, 445
TaqI	TCGA	2 cut(s)	339, 534
TasI	AATT	2 cut(s)	134, 344
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	541
Tru9I	TTAA	1 cut(s)	541
TscAI	CASTG	3 cut(s)	39, 415, 498
TseI	GCWGC	2 cut(s)	22, 56
TspDTI	ATGAA	3 cut(s)	132, 234, 357
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	3 cut(s)	39, 415, 498
VneI	GTGCAC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.