Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013351

Physical Location & Seq

Genomic Coordinates Forward (+)

878364 .. 879664

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTTGGAGAACTGCTTGCAGCTGAGCACAGTGTGCACTACAAGAGTTGGTGCTGCTGCACAATGCTACCATCCATTTTCTTCCATGGGCAAGTTTATTGTGCCAATTTGTAACGGTTTGAAGAAATCTTCTTTGAAATTCTCTTCATCGTCTTCATCGTTTCCTCATTCCAACAAATCACAGAAATCCCGCTTCATTTGCAAAGCTCGTGAAGCTCTCAATGAAGTTCAAGTGGTGAATGATTCAAGTTGGAGTAGTCTTGTGATTGCAAGTGAGAACCCAGTTCTGGTGGAGTTTTGGGCACCGTGGTGTGGACCGTGCCGGATGATTGCGCCGGTGATCGATGAACTGGCAAAGGAGTACGCCGGGAAGATATCTTGTTTCAAGCTCAACACAGATGAGAGCCCCAACACTGCCACTCAGTACGGTATAAGGAGCATACCAACTGTGCTCTTCTTCAAGAATGGGGAGAAGAAAGAGAGCGTTATTGGTGCAGTGCCAAAGTCCACATTGTCTGCAACCATTGAAAAATATGTAGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009657 GO:0009987 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

183

Amino Acids

19.91

Weight (kDa)

8.77

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03520
fragaria_vesca	FvH4_2g14900
malus_domestica	MD05G1011900.v1.1 MD10G1011900.v1.1
prunus_persica	Prupe.8G016900_v2.0.a1
pyrus_communis	pycom05g00690 pycom10g00750
rosa_chinensis	RchiOBHm_Chr6g0277471
rosa_laevigata	RLG00000013298
rosa_multiflora	Rmu_sc0003910.1_g000011 Rmu_sc0017670.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191280
rosa_rugosa	Rorug06G0108600
rosa_samantha	Rh6AG219400 Rh6BG223300 Rh6CG225800 Rh6DG216100
rosa_wichuraiana	Rw6G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	140
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	365, 428
AfiI	CCNNNNNNNGG	2 cut(s)	289, 314
AgsI	TTSAA	7 cut(s)	124, 139, 233, 249, 388, 463, 530
AleI	CACNNNNGTG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	25, 209, 218, 391
AluI	AGCT	4 cut(s)	25, 209, 218, 391
Alw21I	GWGCWC	3 cut(s)	32, 41, 456
Alw44I	GTGCAC	1 cut(s)	37
ApaLI	GTGCAC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	22, 56, 59
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	250, 352
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	2 cut(s)	41, 307
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	3 cut(s)	32, 41, 456
BbvI	GCAGC	3 cut(s)	34, 43, 46
BccI	CCATC	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	370
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	3 cut(s)	23, 57, 60
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	24, 58, 61
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	370
BmrI	ACTGGG	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	87, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 314
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	284, 357
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	87, 308
BseGI	GGATG	2 cut(s)	73, 333
BseLI	CCNNNNNNNGG	2 cut(s)	289, 314
BseMII	CTCAG	2 cut(s)	17, 437
BseNI	ACTGG	2 cut(s)	284, 357
BseSI	GKGCMC	2 cut(s)	41, 307
BseXI	GCAGC	3 cut(s)	34, 43, 46
BsgI	GTGCAG	2 cut(s)	45, 516
BshNI	GGYRCC	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	3 cut(s)	32, 41, 456
BsiSI	CCGG	3 cut(s)	325, 338, 369
BslI	CCNNNNNNNGG	2 cut(s)	289, 314
Bsp1286I	GDGCHC	5 cut(s)	32, 41, 307, 410, 456
Bsp143I	GATC	2 cut(s)	342, 541
Bsp1720I	GCTNAGC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	193
BspCNI	CTCAG	2 cut(s)	18, 436
BspDI	ATCGAT	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	284, 357
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	87, 308
BssMI	GATC	2 cut(s)	342, 541
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	6 cut(s)	34, 119, 309, 321, 431, 451
Bst6I	CTCTTC	2 cut(s)	151, 461
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	26, 423
BstDSI	CCRYGG	2 cut(s)	87, 308
BstF5I	GGATG	2 cut(s)	73, 333
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	345, 544
BstMBI	GATC	2 cut(s)	342, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 201, 215
BstSCI	CCNGG	1 cut(s)	368
BstSLI	GKGCMC	2 cut(s)	41, 307
BstV1I	GCAGC	3 cut(s)	34, 43, 46
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
Bsu15I	ATCGAT	1 cut(s)	345
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	2 cut(s)	87, 308
BtsCI	GGATG	2 cut(s)	73, 333
BtsI	GCAGTG	2 cut(s)	414, 504
BtsIMutI	CAGTG	3 cut(s)	39, 414, 504
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	364, 427
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	5, 25, 209, 218, 391, 408
CviKI_1	RGCY	6 cut(s)	5, 25, 209, 218, 391, 408
CviQI	GTAC	2 cut(s)	364, 427
DdeI	CTNAG	2 cut(s)	26, 423
DpnI	GATC	2 cut(s)	344, 543
DpnII	GATC	2 cut(s)	342, 541
DraIII	CACNNNGTG	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	151, 461
EarI	CTCTTC	2 cut(s)	151, 461
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	410
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	89, 434, 443, 537
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	23, 57, 60
FokI	GGATG	2 cut(s)	60, 340
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	3 cut(s)	23, 57, 60
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	3 cut(s)	23, 57, 60
HapII	CCGG	3 cut(s)	325, 338, 369
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	3 cut(s)	325, 338, 369
HphI	GGTGA	2 cut(s)	250, 352
Hpy166II	GTNNAC	3 cut(s)	39, 317, 510
Hpy188III	TCNNGA	2 cut(s)	212, 463
Hpy8I	GTNNAC	3 cut(s)	39, 317, 510
HpyCH4III	ACNGT	6 cut(s)	34, 119, 309, 321, 431, 451
HpyCH4V	TGCA	7 cut(s)	22, 39, 62, 204, 272, 497, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 201, 215
HpyF3I	CTNAG	2 cut(s)	26, 423
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	342, 541
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	6 cut(s)	275, 297, 338, 338, 351, 382
Lsp1109I	GCAGC	3 cut(s)	34, 43, 46
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	344, 543
MboI	GATC	2 cut(s)	342, 541
MboII	GAAGA	9 cut(s)	75, 123, 136, 138, 147, 385, 448, 451, 487
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	5 cut(s)	32, 41, 307, 410, 456
MluCI	AATT	2 cut(s)	108, 140
MmeI	TCCRAC	2 cut(s)	198, 233
MnlI	CCTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	547
MslI	CAYNNNNRTG	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	3 cut(s)	325, 338, 369
MspR9I	CCNGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	3 cut(s)	36, 201, 215
NciI	CCSGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	342, 541
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	24, 58, 61
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	365, 428
RsaNI	GTAC	2 cut(s)	364, 427
RseI	CAYNNNNRTG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	3 cut(s)	23, 57, 60
Sau3AI	GATC	2 cut(s)	342, 541
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	5 cut(s)	32, 41, 307, 410, 456
SetI	ASST	4 cut(s)	27, 211, 220, 393
SgrAI	CRCCGGYG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	108, 140
SsiI	CCGC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	6 cut(s)	34, 119, 309, 321, 431, 451
TaqI	TCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	108, 140
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TscAI	CASTG	3 cut(s)	39, 421, 504
TseI	GCWGC	3 cut(s)	22, 56, 59
TspDTI	ATGAA	5 cut(s)	138, 147, 187, 240, 363
TspRI	CASTG	3 cut(s)	39, 421, 504
VneI	GTGCAC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.