Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013351

Physical Location & Seq

Genomic Coordinates Forward (+)

1573396 .. 1574804

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTTGGAAAACTGTTTGCAACTAAGCACAGTGTGCACTACAAGAGTTGGTGCTGCACAATGCTATCAGCCATTTTCTTCCAGGGAAAGGCTTATTGTGCCAACCTGCAATGGATTGAAGAAATCTGTTTTGAAATTCTCTTCATCTTCATCTTTTGCTCCTTCCAATAAATCCCACAGATCCCGCTTTATTTGCAAGGCTCGTGAAGCTGTGAATGAAGTTCAAGTGGTGAATGATTCAAGTTGGAATAACCTGGTGATTGCAAGTGAGGACCCAGTTCTGGTAGAATTTTGGGCACCGTGGTGTGGACCATGCAGGATGATTGCCCCAGTGATCGACGAACTGGCGAAAGAGTATGCTGGGAAGATAGCATGTTTCAAGCTCAATACTGATGACAGCCCTAACATTGCCACTCAATATGGCATAAGGAGCATACCAACTGTGCTTTTCTTCAAGAATGGAGAGAAGAAGGAGAGCGTTATTGGAGCAGTGCCCAAGTCCACCTTGTCTGCCACCATAGAAAAATATGTAGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009657 GO:0009987 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

181

Amino Acids

19.83

Weight (kDa)

8.62

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03520
fragaria_vesca	FvH4_2g14900
malus_domestica	MD05G1011900.v1.1 MD10G1011900.v1.1
prunus_persica	Prupe.8G016900_v2.0.a1
pyrus_communis	pycom05g00690 pycom10g00750
rosa_chinensis	RchiOBHm_Chr6g0277471
rosa_laevigata	RLG00000013298
rosa_multiflora	Rmu_sc0003910.1_g000011 Rmu_sc0017670.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191280
rosa_rugosa	Rorug06G0108600
rosa_samantha	Rh6AG219400 Rh6BG223300 Rh6CG225800 Rh6DG216100
rosa_wichuraiana	Rw6G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	298
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	137, 290
AdeI	CACNNNGTG	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	90, 283, 308
AgsI	TTSAA	6 cut(s)	121, 136, 227, 243, 382, 457
AjnI	CCWGG	2 cut(s)	83, 255
AleI	CACNNNNGTG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	212, 385
AluI	AGCT	2 cut(s)	212, 385
Alw21I	GWGCWC	1 cut(s)	41
Alw44I	GTGCAC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	177
ApaLI	GTGCAC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	137, 290
AspS9I	GGNCC	2 cut(s)	274, 311
AsuHPI	GGTGA	2 cut(s)	244, 271
AvaII	GGWCC	2 cut(s)	274, 311
BaeGI	GKGCMC	3 cut(s)	41, 301, 498
BanI	GGYRCC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	85, 257
BfuAI	ACCTGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	85, 257
Bme18I	GGWCC	2 cut(s)	274, 311
BmgT120I	GGNCC	2 cut(s)	274, 311
BmiI	GGNNCC	2 cut(s)	276, 300
BmrFI	CCNGG	2 cut(s)	85, 257
BmrI	ACTGGG	2 cut(s)	272, 326
BmuI	ACTGGG	2 cut(s)	272, 326
BsaJI	CCNNGG	2 cut(s)	84, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 283, 308
Bse1I	ACTGG	3 cut(s)	278, 332, 351
Bse3DI	GCAATG	2 cut(s)	118, 408
BseBI	CCWGG	2 cut(s)	85, 257
BseDI	CCNNGG	2 cut(s)	84, 302
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	90, 283, 308
BseMI	GCAATG	2 cut(s)	118, 408
BseNI	ACTGG	3 cut(s)	278, 332, 351
BseSI	GKGCMC	3 cut(s)	41, 301, 498
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	41
BslI	CCNNNNNNNGG	3 cut(s)	90, 283, 308
Bsp1286I	GDGCHC	3 cut(s)	41, 301, 498
Bsp143I	GATC	3 cut(s)	182, 336, 535
BspACI	CCGC	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	276, 300
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	118, 408
BsrI	ACTGG	3 cut(s)	278, 332, 351
BssECI	CCNNGG	2 cut(s)	84, 302
BssMI	GATC	3 cut(s)	182, 336, 535
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	85, 257
Bst4CI	ACNGT	4 cut(s)	17, 34, 303, 445
Bst6I	CTCTTC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	3 cut(s)	185, 339, 538
BstMBI	GATC	3 cut(s)	182, 336, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 100, 195, 209, 432
BstNI	CCWGG	2 cut(s)	85, 257
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	83, 255
BstSLI	GKGCMC	3 cut(s)	41, 301, 498
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	182, 535
BstYI	RGATCY	2 cut(s)	182, 535
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	39, 339, 498
BveI	ACCTGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	274, 311
CsiI	ACCWGGT	1 cut(s)	255
CviAII	CATG	2 cut(s)	315, 375
CviJI	RGCY	7 cut(s)	5, 73, 94, 203, 212, 385, 402
CviKI_1	RGCY	7 cut(s)	5, 73, 94, 203, 212, 385, 402
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	184, 338, 537
DpnII	GATC	3 cut(s)	182, 336, 535
DraIII	CACNNNGTG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	274, 311
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	83, 255
FaeI	CATG	2 cut(s)	318, 378
FaiI	YATR	8 cut(s)	316, 360, 376, 423, 428, 437, 521, 531
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	2 cut(s)	314, 374
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	318, 378
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	2 cut(s)	244, 271
Hpy166II	GTNNAC	3 cut(s)	39, 311, 504
Hpy188III	TCNNGA	2 cut(s)	206, 457
Hpy8I	GTNNAC	3 cut(s)	39, 311, 504
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	174, 466
HpyCH4III	ACNGT	4 cut(s)	17, 34, 303, 445
HpyCH4V	TGCA	7 cut(s)	22, 39, 59, 111, 198, 266, 318
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 100, 195, 209, 432
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	318, 378
Kzo9I	GATC	3 cut(s)	182, 336, 535
LmnI	GCTCC	3 cut(s)	166, 432, 488
Lsp1109I	GCAGC	1 cut(s)	43
MabI	ACCWGGT	1 cut(s)	255
MalI	GATC	3 cut(s)	184, 338, 537
MboI	GATC	3 cut(s)	182, 336, 535
MboII	GAAGA	7 cut(s)	72, 133, 135, 141, 379, 445, 481
MflI	RGATCY	2 cut(s)	182, 535
MhlI	GDGCHC	3 cut(s)	41, 301, 498
MluCI	AATT	2 cut(s)	137, 290
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	1 cut(s)	265
MseI	TTAA	1 cut(s)	541
MslI	CAYNNNNRTG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	85, 257
MvaI	CCWGG	2 cut(s)	85, 257
MwoI	GCNNNNNNNGC	5 cut(s)	36, 100, 195, 209, 432
NdeII	GATC	3 cut(s)	182, 336, 535
NlaIII	CATG	2 cut(s)	318, 378
NlaIV	GGNNCC	2 cut(s)	276, 300
NspI	RCATGY	1 cut(s)	378
OliI	CACNNNNGTG	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	83, 255
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	2 cut(s)	83, 255
PspN4I	GGNNCC	2 cut(s)	276, 300
PspPI	GGNCC	2 cut(s)	274, 311
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	182, 535
RseI	CAYNNNNRTG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	541
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	182, 336, 535
Sau96I	GGNCC	2 cut(s)	274, 311
ScrFI	CCNGG	2 cut(s)	85, 257
SduI	GDGCHC	3 cut(s)	41, 301, 498
SetI	ASST	5 cut(s)	110, 214, 258, 387, 509
SexAI	ACCWGGT	1 cut(s)	255
SinI	GGWCC	2 cut(s)	274, 311
SmiMI	CAYNNNNRTG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	137, 290
SsiI	CCGC	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	83, 255
TaaI	ACNGT	4 cut(s)	17, 34, 303, 445
TaqI	TCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	137, 290
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	541
Tru9I	TTAA	1 cut(s)	541
TscAI	CASTG	3 cut(s)	39, 339, 498
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	135, 141, 234
TspRI	CASTG	3 cut(s)	39, 339, 498
VneI	GTGCAC	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	274, 311
XapI	RAATTY	2 cut(s)	137, 290
XceI	RCATGY	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.