Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013351

Physical Location & Seq

Genomic Coordinates Reverse (-)

40036209 .. 40036745

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATTGCTCCGGTGATCGACGAGTTGGCAAAAGAATATGCTGGGAAGATAAACTGCTTCAAGCTCAACACTGATGACAGCCCCAACACTGCCACTCAATATGGCATAAGGAGTATTCCAACTGTGCTCTTCTTCAAAGGTGGAGAGAAGAAAGAAAGTGTTATTGGTGCGGTGCCCAAGTCCACCTTGTCTGCTACCATAGAAAAATATGTAGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009657 GO:0009987 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016999 GO:0017001 GO:0017144 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

73

Amino Acids

7.94

Weight (kDa)

6.16

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	1 - 69	3.2e-15	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03520
fragaria_vesca	FvH4_2g14900
malus_domestica	MD05G1011900.v1.1 MD10G1011900.v1.1
prunus_persica	Prupe.8G016900_v2.0.a1
pyrus_communis	pycom05g00690 pycom10g00750
rosa_chinensis	RchiOBHm_Chr6g0277471
rosa_laevigata	RLG00000013298
rosa_multiflora	Rmu_sc0003910.1_g000011 Rmu_sc0017670.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191280
rosa_rugosa	Rorug06G0108600
rosa_samantha	Rh6AG219400 Rh6BG223300 Rh6CG225800 Rh6DG216100
rosa_wichuraiana	Rw6G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	61, 136
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	177
BseYI	CCCAGC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	129, 177
Bsp143I	GATC	2 cut(s)	15, 214
BspACI	CCGC	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	172
BssMI	GATC	2 cut(s)	15, 214
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	18, 217
BstMBI	GATC	2 cut(s)	15, 214
BstSLI	GKGCMC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	69, 87
CviJI	RGCY	2 cut(s)	64, 81
CviKI_1	RGCY	2 cut(s)	64, 81
DpnI	GATC	2 cut(s)	17, 216
DpnII	GATC	2 cut(s)	15, 214
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
FaiI	YATR	5 cut(s)	39, 102, 107, 200, 210
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
GsaI	CCCAGC	1 cut(s)	45
HapII	CCGG	1 cut(s)	11
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	15, 214
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	2 cut(s)	24, 27
MalI	GATC	2 cut(s)	17, 216
MboI	GATC	2 cut(s)	15, 214
MboII	GAAGA	4 cut(s)	58, 121, 124, 160
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	129, 177
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	1 cut(s)	220
MspI	CCGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	15, 214
NlaIV	GGNNCC	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	15, 214
SduI	GDGCHC	2 cut(s)	129, 177
SetI	ASST	3 cut(s)	66, 142, 188
SgeI	CNNG	6 cut(s)	23, 34, 54, 73, 190, 199
SsiI	CCGC	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
TscAI	CASTG	2 cut(s)	76, 94
TspRI	CASTG	2 cut(s)	76, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.