Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017598

Physical Location & Seq

Genomic Coordinates Reverse (-)

14876400 .. 14878349

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGCGTCCGGCGAGGTATCATCGAGGTCGTGGATGGCTTGGGGGTGGAGCAGGTAAGGTCCGACCATCCGAGTGGTTTGGGAAAAAGAGGAGATTGGGCTAGAATTCATAGGCAAGACATCGAATCAGACAAACAAGCTCTGGTTGCTCTAAATAACAGCTTAATTGATCCAGATAACGTTCTATTTGACTGGGATGCCAACTGTGACCCATGCACTTGGAACAACATTCACTGCCAAAACAATAAGGTCACCTCAGTGCTATTAAGCCGCAATAACCTCGGAGGAAATCTGGTACCGGAACTTGGAACTCTCTCGGCTCTGCAAGATCTGAGTCTTATTAACAATACTATCGAAGGGACCATTCCGGCGGGGTTTGGTAATCTGGAGAACCTCCAAATCTTGGGTTTGTCAGATAACCTGTTATCAGGCGAGATTCCTCCTTCACTTGGGAATTTGAAATCACTTAATTTGCTATTTCTCGATCACAACAAGTTAACTGGGAAAGTTGCTCCCGAAATCGGAAACCTTCCAAGCCTCACATGGGCAGATCTTTCCGCCAACAGTTTGTGTTGGAACTTCTGGCCCACGCTAAAATTTGTGGGTAACTACACATTATGCCAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

211

Amino Acids

22.98

Weight (kDa)

5.13

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	42 - 79	7.9e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	93 - 181	8.2e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17150
rosa_chinensis	RchiOBHm_Chr6g0281631
rosa_laevigata	RLG00000012941
rosa_multiflora	Rmu_sc0006897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186960
rosa_rugosa	Rorug06G0142100
rosa_samantha	Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana	Rw6G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	403
AciI	CCGC	3 cut(s)	271, 371, 558
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	3 cut(s)	105, 454, 596
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	5 cut(s)	305, 403, 449, 521, 544
AgsI	TTSAA	1 cut(s)	460
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	140, 162
AluI	AGCT	2 cut(s)	140, 162
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	584
ApoI	RAATTY	3 cut(s)	105, 454, 596
Asp718I	GGTACC	1 cut(s)	295
AspS9I	GGNCC	3 cut(s)	60, 360, 585
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	60, 360
BanI	GGYRCC	1 cut(s)	295
BccI	CCATC	2 cut(s)	29, 75
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BfaI	CTAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	2 cut(s)	328, 550
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	60, 360
BmgT120I	GGNCC	3 cut(s)	60, 360, 585
BmiI	GGNNCC	2 cut(s)	297, 361
BmrI	ACTGGG	2 cut(s)	202, 510
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	2 cut(s)	202, 510
BpmI	CTGGAG	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	5 cut(s)	305, 403, 449, 521, 544
Bse1I	ACTGG	2 cut(s)	197, 505
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	40, 67, 202
BseLI	CCNNNNNNNGG	5 cut(s)	305, 403, 449, 521, 544
BseMII	CTCAG	2 cut(s)	270, 323
BseNI	ACTGG	2 cut(s)	197, 505
BseRI	GAGGAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	10, 299, 368
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	5 cut(s)	305, 403, 449, 521, 544
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	586
Bsp143I	GATC	4 cut(s)	169, 328, 484, 550
BspACI	CCGC	3 cut(s)	271, 371, 558
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	2 cut(s)	269, 324
BspLI	GGNNCC	2 cut(s)	297, 361
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	197, 505
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	169, 328, 484, 550
Bst4CI	ACNGT	2 cut(s)	206, 566
BstDEI	CTNAG	2 cut(s)	256, 332
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	40, 67, 202
BstKTI	GATC	4 cut(s)	172, 331, 487, 553
BstMBI	GATC	4 cut(s)	169, 328, 484, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	328, 550
BstXI	CCANNNNNNTGG	2 cut(s)	74, 219
BstYI	RGATCY	2 cut(s)	328, 550
BsuRI	GGCC	1 cut(s)	586
BtsCI	GGATG	3 cut(s)	40, 67, 202
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	232, 264
BveI	ACCTGC	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	60, 360, 585
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	2 cut(s)	213, 543
CviJI	RGCY	8 cut(s)	39, 101, 140, 162, 270, 320, 537, 586
CviKI_1	RGCY	8 cut(s)	39, 101, 140, 162, 270, 320, 537, 586
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	2 cut(s)	256, 332
DpnI	GATC	4 cut(s)	171, 330, 486, 552
DpnII	GATC	4 cut(s)	169, 328, 484, 550
EciI	GGCGGA	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	60, 360
Eco91I	GGTNACC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	216, 546
FaiI	YATR	4 cut(s)	111, 214, 544, 619
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	2 cut(s)	212, 542
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	3 cut(s)	47, 54, 209
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	3 cut(s)	10, 299, 368
Hin1II	CATG	2 cut(s)	216, 546
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	3 cut(s)	125, 334, 436
HpaI	GTTAAC	1 cut(s)	498
HpaII	CCGG	3 cut(s)	10, 299, 368
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	7 cut(s)	64, 72, 130, 284, 333, 415, 524
Hpy188III	TCNNGA	4 cut(s)	173, 386, 482, 515
Hpy8I	GTNNAC	1 cut(s)	498
HpyAV	CCTTC	3 cut(s)	350, 453, 539
HpyCH4III	ACNGT	2 cut(s)	206, 566
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	216, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	256, 332
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	216, 546
KpnI	GGTACC	1 cut(s)	299
KspAI	GTTAAC	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	169, 328, 484, 550
LmnI	GCTCC	2 cut(s)	49, 517
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	206, 250, 605
MalI	GATC	4 cut(s)	171, 330, 486, 552
MboI	GATC	4 cut(s)	169, 328, 484, 550
MflI	RGATCY	2 cut(s)	328, 550
MluCI	AATT	5 cut(s)	105, 165, 454, 469, 596
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	87, 554
MnlI	CCTC	9 cut(s)	8, 19, 83, 265, 278, 290, 404, 450, 548
MseI	TTAA	5 cut(s)	164, 266, 342, 468, 497
MslI	CAYNNNNRTG	2 cut(s)	72, 257
MspI	CCGG	3 cut(s)	10, 299, 368
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	4 cut(s)	169, 328, 484, 550
NlaIII	CATG	2 cut(s)	216, 546
NlaIV	GGNNCC	2 cut(s)	297, 361
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	2 cut(s)	206, 250
OliI	CACNNNNGTG	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	125, 436
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Psp1406I	AACGTT	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	297, 361
PspPI	GGNCC	3 cut(s)	60, 360, 585
PsuI	RGATCY	2 cut(s)	328, 550
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	2 cut(s)	72, 257
SaqAI	TTAA	5 cut(s)	164, 266, 342, 468, 497
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	4 cut(s)	169, 328, 484, 550
Sau96I	GGNCC	3 cut(s)	60, 360, 585
SchI	GAGTC	1 cut(s)	343
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	2 cut(s)	60, 360
SmiMI	CAYNNNNRTG	2 cut(s)	72, 257
Sse9I	AATT	5 cut(s)	105, 165, 454, 469, 596
SsiI	CCGC	3 cut(s)	271, 371, 558
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	206, 566
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	4 cut(s)	24, 123, 354, 483
TasI	AATT	5 cut(s)	105, 165, 454, 469, 596
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	125, 436
Tru1I	TTAA	5 cut(s)	164, 266, 342, 468, 497
Tru9I	TTAA	5 cut(s)	164, 266, 342, 468, 497
TscAI	CASTG	2 cut(s)	239, 264
TseFI	GTSAC	2 cut(s)	206, 250
Tsp45I	GTSAC	2 cut(s)	206, 250
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	239, 264
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	2 cut(s)	60, 360
XapI	RAATTY	3 cut(s)	105, 454, 596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.