Rh6BG257700

Somatic embryogenesis receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017598
Physical Location & Seq
Reverse (-)
47117305 .. 47118387
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG257700.1

Sequence Viewer

Length: 606 bp
ATGTCGATGGCAGCCACCGGCTGGTTGATGTTGTTAACCGTAACCATTGCCCTAACTGCAAGCCTCATTTTTCCGTTGGTCTACGGAGCAGACATCGAATCAGACAAACAAGCTCTGGCTGCGTTGAAGAAGAGCTTAGTGGATCCATTGAACGTTCTCTCTGACTGGGATGTCGCCGTTAACCCATGCAGTTGGAACTTCATTGAGTGCGAGAACAATAGGGTCACCTCAGTGAGCATAGTCCGCAATAACATTGGAGGAAATCTGGCACCGGAACTTGGAGGTCTTTCGGCTCTAGTAGATCTGAGTATTATCAACAATACGCTCGAAGGAACCATTCCGGCGGAGCTTGGTAACCTGGAGAACCTCCGAGTCTTGAGGTTGTCAGATAACCTATTATCAGGCAAGATTCCTCCTTCACTGGGGAACTTGAGATCACTGGTTTTTGCAAATCTCGATCACAACGAACTCACTGGGGAAGTCTCCTACCAAATTGGAACCCTTCCAAACATCAAACTGGCAGATTTTTCCGGGAACAGTTTGTGTTGGGACTTCTGGCCCACGCCAAATTTTCTGGGTGATTACACATTATGCCAAGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_4 LRR_8

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

4.34

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 70 1.2e-11 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017598)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17150
rosa_chinensis RchiOBHm_Chr6g0281631
rosa_laevigata RLG00000012941
rosa_multiflora Rmu_sc0006897.1_g000001
rosa_roxburghii Rroxscaffold_7G00186960
rosa_rugosa Rorug06G0142100
rosa_samantha Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana Rw6G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 21
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 244, 344
AclI AACGTT 1 cut(s) 153
AclWI GGATC 2 cut(s) 137, 150
AcsI RAATTY 1 cut(s) 568
AfiI CCNNNNNNNGG 3 cut(s) 21, 278, 422
AgsI TTSAA 2 cut(s) 127, 151
AjnI CCWGG 1 cut(s) 357
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 3 cut(s) 113, 135, 349
AluI AGCT 3 cut(s) 113, 135, 349
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 2 cut(s) 137, 150
AoxI GGCC 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 11, 119
ApoI RAATTY 1 cut(s) 568
AspS9I GGNCC 1 cut(s) 558
AsuC2I CCSGG 1 cut(s) 532
AsuHPI GGTGA 2 cut(s) 217, 590
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 23, 106
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 359
BcnI CCSGG 1 cut(s) 532
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 1 cut(s) 296
BglII AGATCT 1 cut(s) 301
BisI GCNGC 2 cut(s) 12, 120
BlsI GCNGC 2 cut(s) 13, 121
Bme1390I CCNGG 2 cut(s) 359, 532
BmgT120I GGNCC 1 cut(s) 558
BmiI GGNNCC 4 cut(s) 144, 270, 334, 499
BmrFI CCNGG 2 cut(s) 359, 532
BmrI ACTGGG 3 cut(s) 175, 431, 483
BmuI ACTGGG 3 cut(s) 175, 431, 483
BpmI CTGGAG 1 cut(s) 380
BpuEI CTTGAG 2 cut(s) 397, 451
BpuMI CCSGG 1 cut(s) 532
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 278, 422
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 5 cut(s) 170, 426, 444, 478, 522
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 3 cut(s) 21, 278, 422
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 243, 296
BseNI ACTGG 5 cut(s) 170, 426, 444, 478, 522
BseXI GCAGC 2 cut(s) 23, 106
BshFI GGCC 1 cut(s) 559
BshNI GGYRCC 1 cut(s) 268
BsiSI CCGG 4 cut(s) 18, 272, 341, 531
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 3 cut(s) 21, 278, 422
BsmAI GTCTC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 559
Bsp143I GATC 4 cut(s) 142, 301, 434, 457
BspACI CCGC 2 cut(s) 244, 344
BspANI GGCC 1 cut(s) 559
BspCNI CTCAG 2 cut(s) 242, 297
BspLI GGNNCC 4 cut(s) 144, 270, 334, 499
BspPI GGATC 2 cut(s) 137, 150
BspQI GCTCTTC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 5 cut(s) 170, 426, 444, 478, 522
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 4 cut(s) 142, 301, 434, 457
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 40, 539
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 3 cut(s) 136, 229, 305
BstEII GGTNACC 2 cut(s) 223, 353
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 4 cut(s) 145, 304, 437, 460
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 4 cut(s) 142, 301, 434, 457
BstMWI GCNNNNNNNGC 3 cut(s) 56, 119, 243
BstNI CCWGG 1 cut(s) 359
BstPI GGTNACC 2 cut(s) 223, 353
BstSCI CCNGG 2 cut(s) 357, 530
BstV1I GCAGC 2 cut(s) 23, 106
BstX2I RGATCY 2 cut(s) 142, 301
BstXI CCANNNNNNTGG 1 cut(s) 192
BstYI RGATCY 2 cut(s) 142, 301
BsuRI GGCC 1 cut(s) 559
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 4 cut(s) 237, 419, 437, 471
Cac8I GCNNGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 558
CviAII CATG 1 cut(s) 186
CviJI RGCY 9 cut(s) 14, 21, 63, 113, 119, 135, 293, 349, 559
CviKI_1 RGCY 9 cut(s) 14, 21, 63, 113, 119, 135, 293, 349, 559
DdeI CTNAG 3 cut(s) 136, 229, 305
DpnI GATC 4 cut(s) 144, 303, 436, 459
DpnII GATC 4 cut(s) 142, 301, 434, 457
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 1 cut(s) 359
Eco91I GGTNACC 2 cut(s) 223, 353
EcoO65I GGTNACC 2 cut(s) 223, 353
EcoRII CCWGG 1 cut(s) 357
FaeI CATG 1 cut(s) 189
FaiI YATR 3 cut(s) 187, 239, 592
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 563
FatI CATG 1 cut(s) 185
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 12, 120
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 12, 120
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 12, 120
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 1 cut(s) 559
HapII CCGG 4 cut(s) 18, 272, 341, 531
Hin1II CATG 1 cut(s) 189
HincII GTYRAC 2 cut(s) 36, 181
HindII GTYRAC 2 cut(s) 36, 181
HinfI GANTC 3 cut(s) 98, 372, 409
HpaI GTTAAC 2 cut(s) 36, 181
HpaII CCGG 4 cut(s) 18, 272, 341, 531
HphI GGTGA 2 cut(s) 217, 590
Hpy166II GTNNAC 3 cut(s) 36, 82, 181
Hpy188I TCNGA 5 cut(s) 103, 163, 306, 371, 388
Hpy188III TCNNGA 2 cut(s) 376, 455
Hpy8I GTNNAC 3 cut(s) 36, 82, 181
HpyAV CCTTC 3 cut(s) 323, 426, 512
HpyCH4III ACNGT 2 cut(s) 40, 539
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 59, 189, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 119, 243
HpyF3I CTNAG 3 cut(s) 136, 229, 305
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 189
KspAI GTTAAC 2 cut(s) 36, 181
Kzo9I GATC 4 cut(s) 142, 301, 434, 457
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 86, 346
Lsp1109I GCAGC 2 cut(s) 23, 106
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 3 cut(s) 40, 223, 353
MalI GATC 4 cut(s) 144, 303, 436, 459
MboI GATC 4 cut(s) 142, 301, 434, 457
MboII GAAGA 2 cut(s) 139, 142
MflI RGATCY 2 cut(s) 142, 301
MluCI AATT 2 cut(s) 492, 568
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 7 cut(s) 74, 238, 251, 275, 372, 377, 423
MseI TTAA 2 cut(s) 35, 180
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 4 cut(s) 18, 272, 341, 531
MspR9I CCNGG 2 cut(s) 359, 532
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 56, 119, 243
NciI CCSGG 1 cut(s) 532
NdeII GATC 4 cut(s) 142, 301, 434, 457
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 4 cut(s) 144, 270, 334, 499
NmuCI GTSAC 1 cut(s) 223
OliI CACNNNNGTG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PfeI GAWTC 2 cut(s) 98, 409
PflMI CCANNNNNTGG 1 cut(s) 21
PfoI TCCNGGA 1 cut(s) 530
PkrI GCNGC 2 cut(s) 13, 121
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp1406I AACGTT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 357
PspEI GGTNACC 2 cut(s) 223, 353
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 4 cut(s) 144, 270, 334, 499
PspPI GGNCC 1 cut(s) 558
PsuI RGATCY 2 cut(s) 142, 301
RseI CAYNNNNRTG 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 35, 180
SatI GCNGC 2 cut(s) 12, 120
Sau3AI GATC 4 cut(s) 142, 301, 434, 457
Sau96I GGNCC 1 cut(s) 558
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 359, 532
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 376, 430
SmoI CTYRAG 2 cut(s) 376, 430
Sse9I AATT 2 cut(s) 492, 568
SsiI CCGC 2 cut(s) 244, 344
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 357, 530
TaaI ACNGT 2 cut(s) 40, 539
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 5, 96, 327, 456
TasI AATT 2 cut(s) 492, 568
TfiI GAWTC 2 cut(s) 98, 409
Tru1I TTAA 2 cut(s) 35, 180
Tru9I TTAA 2 cut(s) 35, 180
TscAI CASTG 4 cut(s) 237, 426, 444, 478
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 11, 119
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 2 cut(s) 63, 99
TspRI CASTG 4 cut(s) 237, 426, 444, 478
Van91I CCANNNNNTGG 1 cut(s) 21
XapI RAATTY 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.