Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017598

Physical Location & Seq

Genomic Coordinates Reverse (-)

24142512 .. 24143123

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCGATGGCAGCCCCCAGCTGCTTGATGCTGTTAAACCTAACCATAACCCTAACTGCAAGCCTCATTTTTCCGTTGGTCTACGGAGACGACATTGAATCAGACAAACAAGCTCTGGCTGCGTTGAAGAATAGCTTAGTGGATCCAGGAAACGTTCTCTTTGACTGGGATGTCGCCGTTAACCCATGTACTTGGAACTTCATTGAGTGCCAGAACAATAGGGTCACCTCAGTGTTCTTAGGCCAAAATAACCGCGCGATCGGAGGAAATCTGGTACCAGAACTTGGAGGTCTTTCGGCTCTAGAAGAGCTGACTTTTATCAACAATACGATCGAAGGAACCATTCCGGTGGAGCTTGGTAACCTGGAGAACCTCCGAGTCTTGAGGTTGTCAGATAACGCATTATCAGGCGAGATTCCTCCTTCACTGGGGAACTTGAGATCACTTAATTTACTAAATCTCGATCAGAACTACTTCACTGGGATAGTCTCCTCCCAAATTGGAAGCCTTCCAAGCCTCAAACTGGCAGATTTTTCCGGCAACAGTTTGTGTTGGGATTTCTGGCCCGCGCCAGAATTTGTAGGTGATTACACATTATGCCAACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

204

Amino Acids

22.04

Weight (kDa)

4.07

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 70	2.1e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	89 - 174	3.4e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17150
rosa_chinensis	RchiOBHm_Chr6g0281631
rosa_laevigata	RLG00000012941
rosa_multiflora	Rmu_sc0006897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186960
rosa_rugosa	Rorug06G0142100
rosa_samantha	Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana	Rw6G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	255, 257, 569
AciI	CCGC	2 cut(s)	253, 567
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	137, 150
AcsI	RAATTY	1 cut(s)	575
AfaI	GTAC	2 cut(s)	190, 276
AfiI	CCNNNNNNNGG	3 cut(s)	284, 428, 523
AgsI	TTSAA	2 cut(s)	98, 127
AjnI	CCWGG	2 cut(s)	145, 363
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	5 cut(s)	21, 113, 135, 310, 355
AluI	AGCT	5 cut(s)	21, 113, 135, 310, 355
Alw26I	GTCTC	2 cut(s)	81, 493
AlwI	GGATC	2 cut(s)	137, 150
AoxI	GGCC	2 cut(s)	241, 563
ApeKI	GCWGC	3 cut(s)	11, 21, 119
ApoI	RAATTY	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	473
Asp718I	GGTACC	1 cut(s)	274
AspLEI	GCGC	2 cut(s)	257, 571
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	217, 596
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	8, 23, 106
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	2 cut(s)	147, 365
BcoDI	GTCTC	2 cut(s)	81, 493
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	3 cut(s)	12, 22, 120
BlsI	GCNGC	3 cut(s)	13, 23, 121
Bme1390I	CCNGG	2 cut(s)	147, 365
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	3 cut(s)	144, 276, 340
BmrFI	CCNGG	2 cut(s)	147, 365
BmrI	ACTGGG	3 cut(s)	175, 437, 489
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	3 cut(s)	175, 437, 489
BpmI	CTGGAG	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	403, 457
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 428, 523
Bse1I	ACTGG	4 cut(s)	170, 432, 484, 528
BseBI	CCWGG	2 cut(s)	147, 365
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	3 cut(s)	284, 428, 523
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	4 cut(s)	170, 432, 484, 528
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	3 cut(s)	8, 23, 106
BseYI	CCCAGC	1 cut(s)	17
Bsh1236I	CGCG	3 cut(s)	255, 257, 569
Bsh1285I	CGRYCG	2 cut(s)	261, 333
BshFI	GGCC	2 cut(s)	243, 565
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	2 cut(s)	261, 333
BsiSI	CCGG	2 cut(s)	347, 537
BslI	CCNNNNNNNGG	3 cut(s)	284, 428, 523
BsmAI	GTCTC	2 cut(s)	81, 493
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	243, 565
Bsp143I	GATC	5 cut(s)	142, 258, 330, 440, 463
BspACI	CCGC	2 cut(s)	253, 567
BspANI	GGCC	2 cut(s)	243, 565
BspCNI	CTCAG	1 cut(s)	242
BspFNI	CGCG	3 cut(s)	255, 257, 569
BspLI	GGNNCC	3 cut(s)	144, 276, 340
BspPI	GGATC	2 cut(s)	137, 150
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	4 cut(s)	170, 432, 484, 528
BssMI	GATC	5 cut(s)	142, 258, 330, 440, 463
Bst2UI	CCWGG	2 cut(s)	147, 365
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	61, 567
BstDEI	CTNAG	3 cut(s)	136, 229, 238
BstEII	GGTNACC	2 cut(s)	223, 359
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	3 cut(s)	255, 257, 569
BstHHI	GCGC	2 cut(s)	257, 571
BstKTI	GATC	5 cut(s)	145, 261, 333, 443, 466
BstMAI	GTCTC	2 cut(s)	81, 493
BstMBI	GATC	5 cut(s)	142, 258, 330, 440, 463
BstMCI	CGRYCG	2 cut(s)	261, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 513
BstNI	CCWGG	2 cut(s)	147, 365
BstPI	GGTNACC	2 cut(s)	223, 359
BstSCI	CCNGG	2 cut(s)	145, 363
BstUI	CGCG	3 cut(s)	255, 257, 569
BstV1I	GCAGC	3 cut(s)	8, 23, 106
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	2 cut(s)	192, 349
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	243, 565
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	237, 425, 477
Cac8I	GCNNGC	2 cut(s)	61, 567
CfoI	GCGC	2 cut(s)	257, 571
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	189, 275
CviAII	CATG	1 cut(s)	186
CviQI	GTAC	2 cut(s)	189, 275
DdeI	CTNAG	3 cut(s)	136, 229, 238
DpnI	GATC	5 cut(s)	144, 260, 332, 442, 465
DpnII	GATC	5 cut(s)	142, 258, 330, 440, 463
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco91I	GGTNACC	2 cut(s)	223, 359
EcoO65I	GGTNACC	2 cut(s)	223, 359
EcoRII	CCWGG	2 cut(s)	145, 363
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	189
FaiI	YATR	3 cut(s)	47, 187, 598
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	1 cut(s)	185
FauI	CCCGC	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	12, 22, 120
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	12, 22, 120
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	2 cut(s)	256, 570
GluI	GCNGC	3 cut(s)	12, 22, 120
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	243, 565
HapII	CCGG	2 cut(s)	347, 537
HhaI	GCGC	2 cut(s)	257, 571
Hin1II	CATG	1 cut(s)	189
Hin6I	GCGC	2 cut(s)	255, 569
HinP1I	GCGC	2 cut(s)	255, 569
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	98, 378, 415
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	347, 537
HphI	GGTGA	2 cut(s)	217, 596
Hpy166II	GTNNAC	2 cut(s)	82, 181
Hpy188I	TCNGA	5 cut(s)	103, 263, 377, 394, 468
Hpy188III	TCNNGA	3 cut(s)	302, 382, 461
Hpy8I	GTNNAC	2 cut(s)	82, 181
HpyAV	CCTTC	3 cut(s)	329, 432, 518
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 513
HpyF3I	CTNAG	3 cut(s)	136, 229, 238
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	189
HspAI	GCGC	2 cut(s)	255, 569
KpnI	GGTACC	1 cut(s)	278
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	142, 258, 330, 440, 463
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	3 cut(s)	8, 23, 106
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	223, 359
MalI	GATC	5 cut(s)	144, 260, 332, 442, 465
MboI	GATC	5 cut(s)	142, 258, 330, 440, 463
MboII	GAAGA	2 cut(s)	139, 317
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	3 cut(s)	448, 498, 575
MlyI	GAGTC	1 cut(s)	387
MnlI	CCTC	9 cut(s)	74, 238, 257, 281, 378, 383, 429, 502, 527
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	35, 180, 447
MslI	CAYNNNNRTG	2 cut(s)	230, 347
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	2 cut(s)	347, 537
MspR9I	CCNGG	2 cut(s)	147, 365
MvaI	CCWGG	2 cut(s)	147, 365
MvnI	CGCG	3 cut(s)	255, 257, 569
MwoI	GCNNNNNNNGC	2 cut(s)	119, 513
NdeII	GATC	5 cut(s)	142, 258, 330, 440, 463
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	144, 276, 340
NmuCI	GTSAC	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	98, 415
PflMI	CCANNNNNTGG	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	13, 23, 121
Ple19I	CGATCG	2 cut(s)	261, 333
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	145, 363
PspEI	GGTNACC	2 cut(s)	223, 359
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	2 cut(s)	145, 363
PspN4I	GGNNCC	3 cut(s)	144, 276, 340
PspPI	GGNCC	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	142
PvuI	CGATCG	2 cut(s)	261, 333
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	2 cut(s)	190, 276
RsaNI	GTAC	2 cut(s)	189, 275
RseI	CAYNNNNRTG	2 cut(s)	230, 347
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	35, 180, 447
SatI	GCNGC	3 cut(s)	12, 22, 120
Sau3AI	GATC	5 cut(s)	142, 258, 330, 440, 463
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	2 cut(s)	147, 365
SfaNI	GCATC	1 cut(s)	18
SmiMI	CAYNNNNRTG	2 cut(s)	230, 347
SmlI	CTYRAG	2 cut(s)	382, 436
SmoI	CTYRAG	2 cut(s)	382, 436
Sse9I	AATT	3 cut(s)	448, 498, 575
SsiI	CCGC	2 cut(s)	253, 567
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	145, 363
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	5, 333, 462
TasI	AATT	3 cut(s)	448, 498, 575
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	98, 415
Tru1I	TTAA	3 cut(s)	35, 180, 447
Tru9I	TTAA	3 cut(s)	35, 180, 447
TscAI	CASTG	3 cut(s)	237, 432, 484
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	11, 21, 119
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	2 cut(s)	63, 99
TspRI	CASTG	3 cut(s)	237, 432, 484
Van91I	CCANNNNNTGG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	575
XbaI	TCTAGA	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.