Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017598

Physical Location & Seq

Genomic Coordinates Reverse (-)

43797998 .. 43804653

Gene Structure 6656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTTAATTTTAATTTCTGGCTTAATGCATATCTGATTGTTGATGTGGAAAACATCTACGTTGCTAATGCTTTTATTGTTGATATCTTGATTAATGCCTCATTTTTCCGTTGGTCTACGGAGCAGACATCGAATCAGACAAACAAGCTCTGGACTGCGTTGAAGAAGAGCTTAGTGGATCCATTGAACGTTCTCTCTAACTGGGATGTCGCCGTTAGCCCATGCACTTGGAACTTCATTGAGTGCGAGAACAATAGGGTCACCGCAGTGAGCATAGTCCGCCATAACATCGGAGGAAATCTGGCACCGGAACTTGGAGGTCTTTCGGCTCTAGTAGATCTGAGTATTATCAACAATACGCTCGAAGGAACCATTCCGGCGGAGCTTGGTAACCTGGAGAACCTCCGAGTCTTGAGGTTGTCAGATAACATATTATCAGGCAAGATTCCTCCTTCACTGGGGAACTTGAGATCACTGGTTTTTGCAAATCTCGATCAGAACGAACTCACTGGGGAAGTCTCCTACCAAATTGGAACCCTTCCAAACATCAAAGTGGCAGATTTTTCCGGGAACAATTTGTGTTGGGACTTCTGGCCCACGCCAAATTTTCTGGGTCGTATTCTTTGGCTGTTAAAACCCACTGTCAACCTCTTCTCATCGGCAATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

223

Amino Acids

24.9

Weight (kDa)

4.86

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	53 - 82	2e-07	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17150
rosa_chinensis	RchiOBHm_Chr6g0281631
rosa_laevigata	RLG00000012941
rosa_multiflora	Rmu_sc0006897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186960
rosa_rugosa	Rorug06G0142100
rosa_samantha	Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana	Rw6G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	3 cut(s)	264, 280, 380
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	1 cut(s)	604
AfiI	CCNNNNNNNGG	2 cut(s)	314, 458
AgsI	TTSAA	2 cut(s)	163, 187
AjnI	CCWGG	1 cut(s)	393
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	148, 171, 385
AluI	AGCT	3 cut(s)	148, 171, 385
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	2 cut(s)	173, 186
AoxI	GGCC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	604
AseI	ATTAAT	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	594
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	332
BglII	AGATCT	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	395, 568
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	4 cut(s)	180, 306, 370, 535
BmrFI	CCNGG	2 cut(s)	395, 568
BmrI	ACTGGG	3 cut(s)	211, 467, 519
BmuI	ACTGGG	3 cut(s)	211, 467, 519
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	2 cut(s)	433, 487
BpuMI	CCSGG	1 cut(s)	568
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 458
Bse1I	ACTGG	4 cut(s)	206, 462, 480, 514
BseBI	CCWGG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	314, 458
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	4 cut(s)	206, 462, 480, 514
BshFI	GGCC	1 cut(s)	595
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	3 cut(s)	308, 377, 567
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	314, 458
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	595
Bsp143I	GATC	4 cut(s)	178, 337, 470, 493
BspACI	CCGC	3 cut(s)	264, 280, 380
BspANI	GGCC	1 cut(s)	595
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	180, 306, 370, 535
BspPI	GGATC	2 cut(s)	173, 186
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	304
BsrI	ACTGG	4 cut(s)	206, 462, 480, 514
BssMI	GATC	4 cut(s)	178, 337, 470, 493
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	2 cut(s)	161, 656
BstDEI	CTNAG	2 cut(s)	172, 341
BstEII	GGTNACC	2 cut(s)	259, 389
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	181, 340, 473, 496
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	4 cut(s)	178, 337, 470, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	395
BstPI	GGTNACC	2 cut(s)	259, 389
BstSCI	CCNGG	2 cut(s)	393, 566
BstX2I	RGATCY	2 cut(s)	178, 337
BstXI	CCANNNNNNTGG	1 cut(s)	228
BstYI	RGATCY	2 cut(s)	178, 337
BsuRI	GGCC	1 cut(s)	595
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	5 cut(s)	273, 455, 473, 507, 639
Cfr13I	GGNCC	1 cut(s)	594
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	8 cut(s)	22, 148, 171, 219, 329, 385, 595, 628
CviKI_1	RGCY	8 cut(s)	22, 148, 171, 219, 329, 385, 595, 628
DdeI	CTNAG	2 cut(s)	172, 341
DpnI	GATC	4 cut(s)	180, 339, 472, 495
DpnII	GATC	4 cut(s)	178, 337, 470, 493
Eam1104I	CTCTTC	2 cut(s)	161, 656
EarI	CTCTTC	2 cut(s)	161, 656
EciI	GGCGGA	2 cut(s)	269, 395
Eco32I	GATATC	1 cut(s)	85
Eco91I	GGTNACC	2 cut(s)	259, 389
EcoO65I	GGTNACC	2 cut(s)	259, 389
EcoRII	CCWGG	1 cut(s)	393
EcoRV	GATATC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	31
FaeI	CATG	1 cut(s)	225
FaiI	YATR	5 cut(s)	31, 223, 275, 285, 431
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	116
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	595
HapII	CCGG	3 cut(s)	308, 377, 567
Hin1II	CATG	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	3 cut(s)	133, 408, 445
HpaII	CCGG	3 cut(s)	308, 377, 567
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	117, 646
Hpy188I	TCNGA	7 cut(s)	36, 138, 293, 342, 407, 424, 498
Hpy188III	TCNNGA	4 cut(s)	88, 151, 412, 491
Hpy8I	GTNNAC	2 cut(s)	117, 646
HpyAV	CCTTC	3 cut(s)	359, 462, 548
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	2 cut(s)	60, 189
HpyCH4V	TGCA	3 cut(s)	29, 225, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	2 cut(s)	172, 341
HpySE526I	ACGT	2 cut(s)	60, 189
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	178, 337, 470, 493
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	121, 382
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	60, 189
MaeIII	GTNAC	2 cut(s)	259, 389
MalI	GATC	4 cut(s)	180, 339, 472, 495
MboI	GATC	4 cut(s)	178, 337, 470, 493
MboII	GAAGA	3 cut(s)	175, 178, 643
MflI	RGATCY	2 cut(s)	178, 337
MluCI	AATT	5 cut(s)	7, 13, 528, 574, 604
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	7 cut(s)	109, 287, 311, 408, 413, 459, 659
Mph1103I	ATGCAT	1 cut(s)	31
MseI	TTAA	5 cut(s)	6, 12, 24, 93, 632
MslI	CAYNNNNRTG	2 cut(s)	266, 551
MspI	CCGG	3 cut(s)	308, 377, 567
MspR9I	CCNGG	2 cut(s)	395, 568
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	4 cut(s)	178, 337, 470, 493
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	4 cut(s)	180, 306, 370, 535
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	133, 445
PfoI	TCCNGGA	1 cut(s)	566
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	393
PspEI	GGTNACC	2 cut(s)	259, 389
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	4 cut(s)	180, 306, 370, 535
PspPI	GGNCC	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	178, 337
RseI	CAYNNNNRTG	2 cut(s)	266, 551
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	5 cut(s)	6, 12, 24, 93, 632
Sau3AI	GATC	4 cut(s)	178, 337, 470, 493
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	2 cut(s)	395, 568
SmiMI	CAYNNNNRTG	2 cut(s)	266, 551
SmlI	CTYRAG	2 cut(s)	412, 466
SmoI	CTYRAG	2 cut(s)	412, 466
Sse9I	AATT	5 cut(s)	7, 13, 528, 574, 604
SsiI	CCGC	3 cut(s)	264, 280, 380
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	393, 566
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	2 cut(s)	63, 192
TaqI	TCGA	3 cut(s)	131, 363, 492
TasI	AATT	5 cut(s)	7, 13, 528, 574, 604
TfiI	GAWTC	2 cut(s)	133, 445
Tru1I	TTAA	5 cut(s)	6, 12, 24, 93, 632
Tru9I	TTAA	5 cut(s)	6, 12, 24, 93, 632
TscAI	CASTG	5 cut(s)	273, 462, 480, 514, 646
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	2 cut(s)	98, 134
TspRI	CASTG	5 cut(s)	273, 462, 480, 514, 646
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.