Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017598

Physical Location & Seq

Genomic Coordinates Reverse (-)

43672206 .. 43672811

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG248800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGATGGCAGCCACCGCCTGCTTGATGTTGTTAACCCTAACCATTACCCTAACTGCAAGCCTCATTTTTCCGTTGGTCTACGGAGCAGACATCGAATCAGACAAACAAGCTCTGGCTGCGTTGAAGAAGAGCTTAGTGGATCCATTGAACGTTCTCTCTAACTGGGATGTCGCCGTTAGCCCATGCACTTGGAAATTCATTGAGTGCGAGAACAATAGGGTCACCTCACTGAGCATAGGCATCAATAACCTAGGAGGAAATCTGGCACCGGAACTTGGAGGTCTTTCGGCTCTAGTAGATCTGAGTATTATCAACAATACGATCGAAGGAACCATTCCGGAGGAGCTTGGTAACCTGGAGAACCTCCGAGTCTTGAGGTTGTCAGATAACCTATTATCAGGCAAGATTCCTCCTTCACTGGGGAACTTGAGATCACTGGTTTTTGCAAATCTCGATCACAACGAACTCACTGGGGAAGTCGCCTACCAAATTGGAAACCTTCCAAACATGAAAGTGGCAGATTTTTCCGGGAACAATTTGTGTTGGGACTTCTGGCCCAAGCCAAATTTTCTGGGTGATTACACAGTATGCCAAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

4.45

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 70	2.4e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	73 - 172	2.7e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17150
rosa_chinensis	RchiOBHm_Chr6g0281631
rosa_laevigata	RLG00000012941
rosa_multiflora	Rmu_sc0006897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186960
rosa_rugosa	Rorug06G0142100
rosa_samantha	Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana	Rw6G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	18
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	137, 150
AcsI	RAATTY	2 cut(s)	197, 568
AfiI	CCNNNNNNNGG	2 cut(s)	278, 422
AgsI	TTSAA	2 cut(s)	127, 151
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	113, 135, 349
AluI	AGCT	3 cut(s)	113, 135, 349
AlwI	GGATC	2 cut(s)	137, 150
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	11, 119
ApoI	RAATTY	2 cut(s)	197, 568
AspA2I	CCTAGG	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	558
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	217, 590
AvrII	CCTAGG	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	23, 106
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	532
BfaI	CTAG	2 cut(s)	254, 296
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	12, 120
BlnI	CCTAGG	1 cut(s)	253
BlsI	GCNGC	2 cut(s)	13, 121
Bme1390I	CCNGG	2 cut(s)	359, 532
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	3 cut(s)	144, 270, 334
BmrFI	CCNGG	2 cut(s)	359, 532
BmrI	ACTGGG	3 cut(s)	175, 431, 483
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	3 cut(s)	175, 431, 483
BpmI	CTGGAG	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	397, 451
BpuMI	CCSGG	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	271, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 422
Bse1I	ACTGG	4 cut(s)	170, 426, 444, 478
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	278, 422
BseMII	CTCAG	2 cut(s)	224, 296
BseNI	ACTGG	4 cut(s)	170, 426, 444, 478
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	23, 106
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	272, 341, 531
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	278, 422
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	5 cut(s)	142, 301, 324, 434, 457
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	225, 297
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	144, 270, 334
BspPI	GGATC	2 cut(s)	137, 150
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	268
BsrI	ACTGG	4 cut(s)	170, 426, 444, 478
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	5 cut(s)	142, 301, 324, 434, 457
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	22, 61
BstDEI	CTNAG	3 cut(s)	136, 233, 305
BstEII	GGTNACC	2 cut(s)	223, 353
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	145, 304, 327, 437, 460
BstMBI	GATC	5 cut(s)	142, 301, 324, 434, 457
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 119
BstNI	CCWGG	1 cut(s)	359
BstPI	GGTNACC	2 cut(s)	223, 353
BstSCI	CCNGG	2 cut(s)	357, 530
BstV1I	GCAGC	2 cut(s)	23, 106
BstX2I	RGATCY	2 cut(s)	142, 301
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	2 cut(s)	142, 301
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	4 cut(s)	230, 419, 437, 471
Cac8I	GCNNGC	2 cut(s)	22, 61
Cfr13I	GGNCC	1 cut(s)	558
CviAII	CATG	2 cut(s)	186, 511
DdeI	CTNAG	3 cut(s)	136, 233, 305
DpnI	GATC	5 cut(s)	144, 303, 326, 436, 459
DpnII	GATC	5 cut(s)	142, 301, 324, 434, 457
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	253
Eco91I	GGTNACC	2 cut(s)	223, 353
EcoO65I	GGTNACC	2 cut(s)	223, 353
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	189, 514
FaiI	YATR	4 cut(s)	187, 239, 512, 592
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	185, 510
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	12, 120
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	12, 120
FspBI	CTAG	2 cut(s)	254, 296
GluI	GCNGC	2 cut(s)	12, 120
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	3 cut(s)	272, 341, 531
Hin1II	CATG	2 cut(s)	189, 514
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	98, 372, 409
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	272, 341, 531
HphI	GGTGA	2 cut(s)	217, 590
Hpy166II	GTNNAC	2 cut(s)	36, 82
Hpy188I	TCNGA	4 cut(s)	103, 306, 371, 388
Hpy188III	TCNNGA	3 cut(s)	341, 376, 455
Hpy8I	GTNNAC	2 cut(s)	36, 82
HpyAV	CCTTC	3 cut(s)	323, 426, 512
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	59, 189, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 119
HpyF3I	CTNAG	3 cut(s)	136, 233, 305
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	189, 514
Kpn2I	TCCGGA	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	142, 301, 324, 434, 457
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	86, 346
Lsp1109I	GCAGC	2 cut(s)	23, 106
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	254, 296
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	223, 353
MalI	GATC	5 cut(s)	144, 303, 326, 436, 459
MboI	GATC	5 cut(s)	142, 301, 324, 434, 457
MboII	GAAGA	2 cut(s)	139, 142
MflI	RGATCY	2 cut(s)	142, 301
MluCI	AATT	4 cut(s)	197, 492, 538, 568
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	8 cut(s)	74, 238, 251, 275, 337, 372, 377, 423
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	3 cut(s)	272, 341, 531
MspR9I	CCNGG	2 cut(s)	359, 532
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	17, 119
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	5 cut(s)	142, 301, 324, 434, 457
NlaIII	CATG	2 cut(s)	189, 514
NlaIV	GGNNCC	3 cut(s)	144, 270, 334
NmuCI	GTSAC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	98, 409
PfoI	TCCNGGA	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	13, 121
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp1406I	AACGTT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	357
PspEI	GGTNACC	2 cut(s)	223, 353
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	144, 270, 334
PspPI	GGNCC	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	142, 301
PvuI	CGATCG	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	515
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	2 cut(s)	12, 120
Sau3AI	GATC	5 cut(s)	142, 301, 324, 434, 457
Sau96I	GGNCC	1 cut(s)	558
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	359, 532
SfaNI	GCATC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	376, 430
SmoI	CTYRAG	2 cut(s)	376, 430
Sse9I	AATT	4 cut(s)	197, 492, 538, 568
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	254, 296
StyD4I	CCNGG	2 cut(s)	357, 530
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	4 cut(s)	5, 96, 327, 456
TasI	AATT	4 cut(s)	197, 492, 538, 568
TfiI	GAWTC	2 cut(s)	98, 409
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	4 cut(s)	237, 426, 444, 478
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	11, 119
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	190, 527
TspGWI	ACGGA	2 cut(s)	63, 99
TspRI	CASTG	4 cut(s)	237, 426, 444, 478
XapI	RAATTY	2 cut(s)	197, 568
XmaJI	CCTAGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	254, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.