Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017598

Physical Location & Seq

Genomic Coordinates Reverse (-)

44931093 .. 44931692

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25259

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCAGCCACCGCCTGCTTGATGTTGTTAACCCTAACCATTACCCTAACTGCAAGCCTCATTTTTCCGTTGGTCTACGGAGCAGACATCGAATCAGACAAACAAGCTCTGGCTGCGTTGAAGAAGAGCTTAGTGGATCCATTGAACGTTCTCTCTAACTGGGATGTCGCCGTTAGCCCATGCACTTGGAAATTCATTGAGTGCGAGAACAATAGGGTCACCTCACTGAGCATAGGCATCAATAACCTAGGAGGAAATCTGGCACCGGAACTTGGAGGTCTTTCGGCTCTAGTAGATCTGAGTATTATCAACAATACGATCGAAGGAACCATTCCGGAGGAGCTTGGTAACCTGGAGAACCTCCGAGTCTTGAGGTTGTCAGATAACCTATTATCAGGCAAGATTCCTCCTTCACTGGGGAACTTGAGATCACTGGTTTTTGCAAATCTCGATCACAACGAACTCACTGGGGAAGTCGCCTACCAAATTGGAAACCTTCCAAACATGAAAGTGGCAGATTTTTCCGGGAACAATTTGTGTTGGGACTTCTGGCCCAAGCCAAATTTTCTGGGTGATTACACAGTATGCCAAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

199

Amino Acids

21.5

Weight (kDa)

4.45

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 68	2.3e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	71 - 170	2.6e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17150
rosa_chinensis	RchiOBHm_Chr6g0281631
rosa_laevigata	RLG00000012941
rosa_multiflora	Rmu_sc0006897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186960
rosa_rugosa	Rorug06G0142100
rosa_samantha	Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana	Rw6G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	1 cut(s)	12
AclI	AACGTT	1 cut(s)	147
AclWI	GGATC	2 cut(s)	131, 144
AcsI	RAATTY	2 cut(s)	191, 562
AfiI	CCNNNNNNNGG	2 cut(s)	272, 416
AgsI	TTSAA	2 cut(s)	121, 145
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	3 cut(s)	107, 129, 343
AluI	AGCT	3 cut(s)	107, 129, 343
AlwI	GGATC	2 cut(s)	131, 144
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	2 cut(s)	5, 113
ApoI	RAATTY	2 cut(s)	191, 562
AspA2I	CCTAGG	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	2 cut(s)	211, 584
AvrII	CCTAGG	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	17, 100
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	526
BfaI	CTAG	2 cut(s)	248, 290
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	6, 114
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	2 cut(s)	7, 115
Bme1390I	CCNGG	2 cut(s)	353, 526
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	3 cut(s)	138, 264, 328
BmrFI	CCNGG	2 cut(s)	353, 526
BmrI	ACTGGG	3 cut(s)	169, 425, 477
BmsI	GCATC	1 cut(s)	246
BmuI	ACTGGG	3 cut(s)	169, 425, 477
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	2 cut(s)	391, 445
BpuMI	CCSGG	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	2 cut(s)	265, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 416
Bse1I	ACTGG	4 cut(s)	164, 420, 438, 472
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	272, 416
BseMII	CTCAG	2 cut(s)	218, 290
BseNI	ACTGG	4 cut(s)	164, 420, 438, 472
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	17, 100
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	262
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	266, 335, 525
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	272, 416
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	553
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	5 cut(s)	136, 295, 318, 428, 451
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	2 cut(s)	219, 291
BspEI	TCCGGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	138, 264, 328
BspPI	GGATC	2 cut(s)	131, 144
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	262
BsrI	ACTGG	4 cut(s)	164, 420, 438, 472
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	136, 295, 318, 428, 451
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	16, 55
BstDEI	CTNAG	3 cut(s)	130, 227, 299
BstEII	GGTNACC	2 cut(s)	217, 347
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	5 cut(s)	139, 298, 321, 431, 454
BstMBI	GATC	5 cut(s)	136, 295, 318, 428, 451
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 113
BstNI	CCWGG	1 cut(s)	353
BstPI	GGTNACC	2 cut(s)	217, 347
BstSCI	CCNGG	2 cut(s)	351, 524
BstV1I	GCAGC	2 cut(s)	17, 100
BstX2I	RGATCY	2 cut(s)	136, 295
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	2 cut(s)	136, 295
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	4 cut(s)	224, 413, 431, 465
Cac8I	GCNNGC	2 cut(s)	16, 55
Cfr13I	GGNCC	1 cut(s)	552
CviAII	CATG	2 cut(s)	180, 505
DdeI	CTNAG	3 cut(s)	130, 227, 299
DpnI	GATC	5 cut(s)	138, 297, 320, 430, 453
DpnII	GATC	5 cut(s)	136, 295, 318, 428, 451
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	247
Eco91I	GGTNACC	2 cut(s)	217, 347
EcoO65I	GGTNACC	2 cut(s)	217, 347
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	183, 508
FaiI	YATR	4 cut(s)	181, 233, 506, 586
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	2 cut(s)	179, 504
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	6, 114
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	6, 114
FspBI	CTAG	2 cut(s)	248, 290
GluI	GCNGC	2 cut(s)	6, 114
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	3 cut(s)	266, 335, 525
Hin1II	CATG	2 cut(s)	183, 508
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	92, 366, 403
HpaI	GTTAAC	1 cut(s)	30
HpaII	CCGG	3 cut(s)	266, 335, 525
HphI	GGTGA	2 cut(s)	211, 584
Hpy166II	GTNNAC	2 cut(s)	30, 76
Hpy188I	TCNGA	4 cut(s)	97, 300, 365, 382
Hpy188III	TCNNGA	3 cut(s)	335, 370, 449
Hpy8I	GTNNAC	2 cut(s)	30, 76
HpyAV	CCTTC	3 cut(s)	317, 420, 506
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	53, 183, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 113
HpyF3I	CTNAG	3 cut(s)	130, 227, 299
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	183, 508
Kpn2I	TCCGGA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	136, 295, 318, 428, 451
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	80, 340
Lsp1109I	GCAGC	2 cut(s)	17, 100
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	248, 290
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	217, 347
MalI	GATC	5 cut(s)	138, 297, 320, 430, 453
MboI	GATC	5 cut(s)	136, 295, 318, 428, 451
MboII	GAAGA	2 cut(s)	133, 136
MflI	RGATCY	2 cut(s)	136, 295
MluCI	AATT	4 cut(s)	191, 486, 532, 562
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	8 cut(s)	68, 232, 245, 269, 331, 366, 371, 417
MroI	TCCGGA	1 cut(s)	334
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	3 cut(s)	266, 335, 525
MspR9I	CCNGG	2 cut(s)	353, 526
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	11, 113
NciI	CCSGG	1 cut(s)	526
NdeII	GATC	5 cut(s)	136, 295, 318, 428, 451
NlaIII	CATG	2 cut(s)	183, 508
NlaIV	GGNNCC	3 cut(s)	138, 264, 328
NmuCI	GTSAC	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	92, 403
PfoI	TCCNGGA	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	7, 115
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp1406I	AACGTT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	351
PspEI	GGTNACC	2 cut(s)	217, 347
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	138, 264, 328
PspPI	GGNCC	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	136, 295
PvuI	CGATCG	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	2 cut(s)	6, 114
Sau3AI	GATC	5 cut(s)	136, 295, 318, 428, 451
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	353, 526
SfaNI	GCATC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	370, 424
SmoI	CTYRAG	2 cut(s)	370, 424
Sse9I	AATT	4 cut(s)	191, 486, 532, 562
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	2 cut(s)	248, 290
StyD4I	CCNGG	2 cut(s)	351, 524
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	90, 321, 450
TasI	AATT	4 cut(s)	191, 486, 532, 562
TfiI	GAWTC	2 cut(s)	92, 403
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	4 cut(s)	231, 420, 438, 472
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	5, 113
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	184, 521
TspGWI	ACGGA	2 cut(s)	57, 93
TspRI	CASTG	4 cut(s)	231, 420, 438, 472
XapI	RAATTY	2 cut(s)	191, 562
XmaJI	CCTAGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	2 cut(s)	248, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.