Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017598

Physical Location & Seq

Genomic Coordinates Reverse (-)

42840019 .. 42840624

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG256800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGATGGCAGCCACCGCCTGCTTGATGTTGTTAACCCTAACCATTACCCTAACTGCAAGCCTCATTTTTCCGTTGGTCTACGGAGCAGACATCGAATCAGACAAACAAGCTCTGGCTGCGTTGAAGAAGAGCTTAGTGGATCCATTGAACGTTCTCTCTAACTGGGATGTCGCCGTTAGCCCATGCACTTGGAAATTCATTGAGTGCGAGAACAATAGGGTCACCTCACTGAGCATAGGCATCAATAACCTAGGAGGAAATCTGGCACCGGAACTTGGAGGTCTTTCGGCTCTAGTAGATCTGAGTATTATCAACAATACGATCGAAGGAACCATTCCGGAGGAGCTTGGTAACCTGGAGAACCTCCGAGTCTTGAGGTTGTCAGATAACCTATTATCAGGCAAGATTCCTCCTTCACTGGGGAACTTGAGATCACTGGTTTTTGCAAATCTCGATCACAACGAACTCACTGGGGAAGTCTCCTACCAAATTGGAAACCTTCCAAACATGAAAGTGGCAGATTTTTCCGGGAACAATTTGTGTTGGGACTTCTGGCCCAAGCCAAATTTTCTGGGTGATTACACAGTATGCCAAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

201

Amino Acids

21.74

Weight (kDa)

4.45

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 70	2.4e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	73 - 172	2.4e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17150
rosa_chinensis	RchiOBHm_Chr6g0281631
rosa_laevigata	RLG00000012941
rosa_multiflora	Rmu_sc0006897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186960
rosa_rugosa	Rorug06G0142100
rosa_samantha	Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana	Rw6G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	18
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	137, 150
AcsI	RAATTY	2 cut(s)	197, 568
AfiI	CCNNNNNNNGG	2 cut(s)	278, 422
AgsI	TTSAA	2 cut(s)	127, 151
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	113, 135, 349
AluI	AGCT	3 cut(s)	113, 135, 349
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	137, 150
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	11, 119
ApoI	RAATTY	2 cut(s)	197, 568
AspA2I	CCTAGG	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	558
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	217, 590
AvrII	CCTAGG	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	23, 106
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	254, 296
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	12, 120
BlnI	CCTAGG	1 cut(s)	253
BlsI	GCNGC	2 cut(s)	13, 121
Bme1390I	CCNGG	2 cut(s)	359, 532
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	3 cut(s)	144, 270, 334
BmrFI	CCNGG	2 cut(s)	359, 532
BmrI	ACTGGG	3 cut(s)	175, 431, 483
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	3 cut(s)	175, 431, 483
BpmI	CTGGAG	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	397, 451
BpuMI	CCSGG	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	271, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 422
Bse1I	ACTGG	4 cut(s)	170, 426, 444, 478
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	278, 422
BseMII	CTCAG	2 cut(s)	224, 296
BseNI	ACTGG	4 cut(s)	170, 426, 444, 478
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	23, 106
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	272, 341, 531
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	278, 422
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	5 cut(s)	142, 301, 324, 434, 457
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	225, 297
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	144, 270, 334
BspPI	GGATC	2 cut(s)	137, 150
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	268
BsrI	ACTGG	4 cut(s)	170, 426, 444, 478
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	5 cut(s)	142, 301, 324, 434, 457
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	22, 61
BstDEI	CTNAG	3 cut(s)	136, 233, 305
BstEII	GGTNACC	2 cut(s)	223, 353
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	145, 304, 327, 437, 460
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	5 cut(s)	142, 301, 324, 434, 457
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 119
BstNI	CCWGG	1 cut(s)	359
BstPI	GGTNACC	2 cut(s)	223, 353
BstSCI	CCNGG	2 cut(s)	357, 530
BstV1I	GCAGC	2 cut(s)	23, 106
BstX2I	RGATCY	2 cut(s)	142, 301
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	2 cut(s)	142, 301
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	4 cut(s)	230, 419, 437, 471
Cac8I	GCNNGC	2 cut(s)	22, 61
Cfr13I	GGNCC	1 cut(s)	558
CviAII	CATG	2 cut(s)	186, 511
DdeI	CTNAG	3 cut(s)	136, 233, 305
DpnI	GATC	5 cut(s)	144, 303, 326, 436, 459
DpnII	GATC	5 cut(s)	142, 301, 324, 434, 457
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	253
Eco91I	GGTNACC	2 cut(s)	223, 353
EcoO65I	GGTNACC	2 cut(s)	223, 353
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	189, 514
FaiI	YATR	4 cut(s)	187, 239, 512, 592
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	185, 510
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	12, 120
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	12, 120
FspBI	CTAG	2 cut(s)	254, 296
GluI	GCNGC	2 cut(s)	12, 120
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	3 cut(s)	272, 341, 531
Hin1II	CATG	2 cut(s)	189, 514
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	98, 372, 409
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	272, 341, 531
HphI	GGTGA	2 cut(s)	217, 590
Hpy166II	GTNNAC	2 cut(s)	36, 82
Hpy188I	TCNGA	4 cut(s)	103, 306, 371, 388
Hpy188III	TCNNGA	3 cut(s)	341, 376, 455
Hpy8I	GTNNAC	2 cut(s)	36, 82
HpyAV	CCTTC	3 cut(s)	323, 426, 512
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	59, 189, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 119
HpyF3I	CTNAG	3 cut(s)	136, 233, 305
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	189, 514
Kpn2I	TCCGGA	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	142, 301, 324, 434, 457
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	86, 346
Lsp1109I	GCAGC	2 cut(s)	23, 106
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	254, 296
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	223, 353
MalI	GATC	5 cut(s)	144, 303, 326, 436, 459
MboI	GATC	5 cut(s)	142, 301, 324, 434, 457
MboII	GAAGA	2 cut(s)	139, 142
MflI	RGATCY	2 cut(s)	142, 301
MluCI	AATT	4 cut(s)	197, 492, 538, 568
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	8 cut(s)	74, 238, 251, 275, 337, 372, 377, 423
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	3 cut(s)	272, 341, 531
MspR9I	CCNGG	2 cut(s)	359, 532
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	17, 119
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	5 cut(s)	142, 301, 324, 434, 457
NlaIII	CATG	2 cut(s)	189, 514
NlaIV	GGNNCC	3 cut(s)	144, 270, 334
NmuCI	GTSAC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	98, 409
PfoI	TCCNGGA	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	13, 121
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp1406I	AACGTT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	357
PspEI	GGTNACC	2 cut(s)	223, 353
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	144, 270, 334
PspPI	GGNCC	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	142, 301
PvuI	CGATCG	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	515
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	2 cut(s)	12, 120
Sau3AI	GATC	5 cut(s)	142, 301, 324, 434, 457
Sau96I	GGNCC	1 cut(s)	558
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	359, 532
SfaNI	GCATC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	376, 430
SmoI	CTYRAG	2 cut(s)	376, 430
Sse9I	AATT	4 cut(s)	197, 492, 538, 568
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	254, 296
StyD4I	CCNGG	2 cut(s)	357, 530
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	4 cut(s)	5, 96, 327, 456
TasI	AATT	4 cut(s)	197, 492, 538, 568
TfiI	GAWTC	2 cut(s)	98, 409
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	4 cut(s)	237, 426, 444, 478
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	11, 119
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	190, 527
TspGWI	ACGGA	2 cut(s)	63, 99
TspRI	CASTG	4 cut(s)	237, 426, 444, 478
XapI	RAATTY	2 cut(s)	197, 568
XmaJI	CCTAGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	254, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.