Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006897.1

Orthogroup ID

OG0017598

Physical Location & Seq

Genomic Coordinates Forward (+)

3709 .. 4314

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgtcgatggcagccaccggctgcttgatgttgttaaccctaaccattgccctaactgcaagcctcatttttccgttggtctacggagcagacatcgaatcagacaaacaagctctggttgcgttgaagaagagcttagtggatccattgaacgttctctctgactgggatgtcgccgttagcccatgcacttggaacttcattgagtgcgagaacaatagggtcaccgcagtgagcatagtccgccataacatcggaggaaatctggcaccggaacttggaggtctttcggctctagtagatctgagtattatcaacaatacgctcgaaggaaccattccggcggagcttggtaacctggagaacctccgagtcttgaggttgtcagataacatattatcaggcaagattcctccgtcactggggaacttgagatcactggtttttgcaaatctcgatcagaacgaactcactggggaagtctcctaccaaattggaacccttccaaacatcaaagtggcagatttttccgggaacaatttgtgttgggacttctggcccacgccaaattttctgggtgattacacattatgccaagcagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

201

Amino Acids

21.68

Weight (kDa)

4.34

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17150
rosa_chinensis	RchiOBHm_Chr6g0281631
rosa_laevigata	RLG00000012941
rosa_multiflora	Rmu_sc0006897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186960
rosa_rugosa	Rorug06G0142100
rosa_samantha	Rh6AG254500 Rh6BG257700 Rh6BG257900 Rh6CG256800 Rh6DG248800
rosa_wichuraiana	Rw6G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	3 cut(s)	228, 244, 344
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	137, 150
AcsI	RAATTY	1 cut(s)	568
AfiI	CCNNNNNNNGG	2 cut(s)	278, 422
AgsI	TTSAA	2 cut(s)	127, 151
AjnI	CCWGG	1 cut(s)	357
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	113, 135, 349
AluI	AGCT	3 cut(s)	113, 135, 349
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	137, 150
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	11, 21
ApoI	RAATTY	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	558
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	217, 590
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	8, 23
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	296
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	12, 22
BlsI	GCNGC	2 cut(s)	13, 23
Bme1390I	CCNGG	2 cut(s)	359, 532
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	4 cut(s)	144, 270, 334, 499
BmrFI	CCNGG	2 cut(s)	359, 532
BmrI	ACTGGG	3 cut(s)	175, 431, 483
BmuI	ACTGGG	3 cut(s)	175, 431, 483
BpmI	CTGGAG	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	397, 451
BpuMI	CCSGG	1 cut(s)	532
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 422
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	170, 426, 444, 478
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	359
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	278, 422
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	4 cut(s)	170, 426, 444, 478
BseXI	GCAGC	2 cut(s)	8, 23
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	4 cut(s)	18, 272, 341, 531
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	278, 422
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	142, 301, 434, 457
BspACI	CCGC	3 cut(s)	228, 244, 344
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	1 cut(s)	297
BspLI	GGNNCC	4 cut(s)	144, 270, 334, 499
BspPI	GGATC	2 cut(s)	137, 150
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	4 cut(s)	170, 426, 444, 478
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	4 cut(s)	142, 301, 434, 457
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	136, 305
BstEII	GGTNACC	2 cut(s)	223, 353
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	4 cut(s)	145, 304, 437, 460
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	4 cut(s)	142, 301, 434, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 119, 243
BstNI	CCWGG	1 cut(s)	359
BstPI	GGTNACC	2 cut(s)	223, 353
BstSCI	CCNGG	2 cut(s)	357, 530
BstV1I	GCAGC	2 cut(s)	8, 23
BstX2I	RGATCY	2 cut(s)	142, 301
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	2 cut(s)	142, 301
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	237, 419, 437, 471
Cac8I	GCNNGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	558
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	9 cut(s)	14, 21, 63, 113, 135, 183, 293, 349, 559
CviKI_1	RGCY	9 cut(s)	14, 21, 63, 113, 135, 183, 293, 349, 559
DdeI	CTNAG	2 cut(s)	136, 305
DpnI	GATC	4 cut(s)	144, 303, 436, 459
DpnII	GATC	4 cut(s)	142, 301, 434, 457
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	2 cut(s)	233, 359
Eco91I	GGTNACC	2 cut(s)	223, 353
EcoO65I	GGTNACC	2 cut(s)	223, 353
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	189
FaiI	YATR	5 cut(s)	187, 239, 249, 395, 592
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	12, 22
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	12, 22
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	12, 22
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	4 cut(s)	18, 272, 341, 531
Hin1II	CATG	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	98, 372, 409
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	4 cut(s)	18, 272, 341, 531
HphI	GGTGA	2 cut(s)	217, 590
Hpy166II	GTNNAC	2 cut(s)	36, 82
Hpy188I	TCNGA	7 cut(s)	103, 163, 257, 306, 371, 388, 462
Hpy188III	TCNNGA	2 cut(s)	376, 455
Hpy8I	GTNNAC	2 cut(s)	36, 82
HpyAV	CCTTC	2 cut(s)	323, 512
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	59, 189, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 119, 243
HpyF3I	CTNAG	2 cut(s)	136, 305
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	189
KspAI	GTTAAC	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	142, 301, 434, 457
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	86, 346
Lsp1109I	GCAGC	2 cut(s)	8, 23
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	223, 353, 417
MalI	GATC	4 cut(s)	144, 303, 436, 459
MboI	GATC	4 cut(s)	142, 301, 434, 457
MboII	GAAGA	2 cut(s)	139, 142
MflI	RGATCY	2 cut(s)	142, 301
MluCI	AATT	3 cut(s)	492, 538, 568
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	6 cut(s)	74, 251, 275, 372, 377, 423
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	230, 515
MspI	CCGG	4 cut(s)	18, 272, 341, 531
MspR9I	CCNGG	2 cut(s)	359, 532
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	56, 119, 243
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	4 cut(s)	142, 301, 434, 457
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	4 cut(s)	144, 270, 334, 499
NmuCI	GTSAC	2 cut(s)	223, 417
OliI	CACNNNNGTG	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	98, 409
PfoI	TCCNGGA	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	13, 23
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp1406I	AACGTT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	357
PspEI	GGTNACC	2 cut(s)	223, 353
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	4 cut(s)	144, 270, 334, 499
PspPI	GGNCC	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	142, 301
RseI	CAYNNNNRTG	2 cut(s)	230, 515
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	2 cut(s)	12, 22
Sau3AI	GATC	4 cut(s)	142, 301, 434, 457
Sau96I	GGNCC	1 cut(s)	558
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	359, 532
SetI	ASST	8 cut(s)	115, 137, 156, 286, 351, 360, 369, 383
SmiMI	CAYNNNNRTG	2 cut(s)	230, 515
SmlI	CTYRAG	2 cut(s)	376, 430
SmoI	CTYRAG	2 cut(s)	376, 430
Sse9I	AATT	3 cut(s)	492, 538, 568
SsiI	CCGC	3 cut(s)	228, 244, 344
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	357, 530
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	4 cut(s)	5, 96, 327, 456
TasI	AATT	3 cut(s)	492, 538, 568
TfiI	GAWTC	2 cut(s)	98, 409
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	4 cut(s)	237, 426, 444, 478
TseFI	GTSAC	2 cut(s)	223, 417
TseI	GCWGC	2 cut(s)	11, 21
Tsp45I	GTSAC	2 cut(s)	223, 417
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	3 cut(s)	63, 99, 405
TspRI	CASTG	4 cut(s)	237, 426, 444, 478
XapI	RAATTY	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.