Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016259

Physical Location & Seq

Genomic Coordinates Forward (+)

16420998 .. 16422222

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGAGAGGGAACCGCAAACATGAATAATTTAGAATCATCAGTAGCAACATGGAAACGTCTGCCAGAAGAACCGGTTGTGATCATTCTGGATAAACTGTTGGAATCTATTGACTATGTTCGCTTCGCTGCTGTTTGCAAAGAATGGTATCGTCTAGCTAAAGACAATTATACTCGGGACACAGATCGCCGTCCGAGAGTGGGTAATATATTCTGTTGTGGCTGCGGCCATGGCTGGTTGGCCAAGGTGGATGTATATGATGATGGTCATAGACGCTCTGAGCTTGTGTGGCGTATAGAACTCGTCAACCCTTTTCGGCAAGCAACAACTACTCTTACCTTGCCTCCCTTAGCTTTCGAACGTGATCTTTTTTCTCTAGCTAAGATCCCTAAAGCTCCGAAGGTTCTAGTATCTTCCGATCCAGCCTTGAATCCCGATAATCTTTGGGTTCTAGCATTCCTCACTGACGGTGACGAGCTTGTTTTCCATAAGATAGGACATAACATCTTGAAGAATATAAAAGCAACAAGAGGATCATCATGGTTTACCGATGCTATATTTTACAAAGGTCGTTTCTATGTAATTGATAACACGGATGGAACTATTCTGGTGTTCGATGTTGAAAAAGTCCAGTGGCGTGCACTTAAAATTGCTGGGTTCAGAAGTACTTATGCATATCGTGCATATTTGGTAGAATCAACCAGGGGAGATCTATTGTGTGTTAAAAGATATGTGAAAAAGATAGGGCAATATAGGATGAATGCGGAGGTGACGGAAGGCTTTAGGGTTTACAAGTTGGAGCTGGACAACCAGGTAGTGACTCAGGTCGAGGTCACAAACATGGAAGATGAGACTTTGTTCATAGGTGACACTCCATCGATAAAACTATTACGCAACGACATCAAGGCACTTTGGTCCTCCGGTTTGGATTACTACGCCCCCACCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295

Protein Analysis

317

Amino Acids

36.23

Weight (kDa)

7.59

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	18 - 56	4.7e-07	F-box-like
Beta-prop_KIB1-4	PF03478	66 - 300	2.7e-31	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016259)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19290 FvH4_2g19380 FvH4_2g19460 FvH4_2g19490
rosa_chinensis	RchiOBHm_Chr5g0035781
rosa_laevigata	RLG00000012665
rosa_multiflora	Rmu_sc0002535.1_g000005 Rmu_sc0002535.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183490 Rroxscaffold_7G00183510 Rroxscaffold_7G00183580
rosa_samantha	Rh6BG283900 Rh6BG284100
rosa_wichuraiana	Rw6G024330 Rw6G024360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 225, 764
AclWI	GGATC	3 cut(s)	379, 413, 541
AcoI	YGGCCR	2 cut(s)	226, 240
AfaI	GTAC	1 cut(s)	667
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgeI	ACCGGT	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	430, 511, 623
AjnI	CCWGG	2 cut(s)	701, 810
AluBI	AGCT	7 cut(s)	158, 283, 353, 380, 395, 478, 802
AluI	AGCT	7 cut(s)	158, 283, 353, 380, 395, 478, 802
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	1 cut(s)	845
Alw44I	GTGCAC	1 cut(s)	639
AlwI	GGATC	3 cut(s)	379, 413, 541
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	226, 240
ApaLI	GTGCAC	1 cut(s)	639
ApeKI	GCWGC	2 cut(s)	128, 222
AsiGI	ACCGGT	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	915
AsuHPI	GGTGA	3 cut(s)	482, 781, 878
AsuII	TTCGAA	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	115, 209
BccI	CCATC	3 cut(s)	257, 590, 883
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	2 cut(s)	703, 812
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	845
BfaI	CTAG	4 cut(s)	155, 377, 407, 452
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	3 cut(s)	129, 223, 226
BlsI	GCNGC	3 cut(s)	130, 224, 227
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	2 cut(s)	703, 812
Bme18I	GGWCC	1 cut(s)	915
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	915
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	703, 812
BmsI	GCATC	1 cut(s)	541
BoxI	GACNNNNGTC	1 cut(s)	824
Bpu10I	CCTNAGC	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	357
Bsa29I	ATCGAT	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	229, 243, 702
BsaWI	WCCGGW	2 cut(s)	73, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	703, 812
BseCI	ATCGAT	1 cut(s)	878
BseDI	CCNNGG	3 cut(s)	229, 243, 702
BseGI	GGATG	3 cut(s)	256, 601, 762
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	270, 836
BseNI	ACTGG	1 cut(s)	631
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	2 cut(s)	115, 209
BseYI	CCCAGC	1 cut(s)	653
BshFI	GGCC	2 cut(s)	228, 242
BshTI	ACCGGT	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	878
BsiHKAI	GWGCWC	1 cut(s)	643
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	74, 921
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	845
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	2 cut(s)	455, 766
BsnI	GGCC	2 cut(s)	228, 242
BsoBI	CYCGRG	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	15, 225, 764
BspANI	GGCC	2 cut(s)	228, 242
BspCNI	CTCAG	2 cut(s)	271, 835
BspDI	ATCGAT	1 cut(s)	878
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	3 cut(s)	379, 413, 541
BspT104I	TTCGAA	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	229, 243, 702
BssMI	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
BssT1I	CCWWGG	2 cut(s)	229, 243
Bst2UI	CCWGG	2 cut(s)	703, 812
Bst4CI	ACNGT	3 cut(s)	99, 470, 946
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	321, 639
BstDEI	CTNAG	4 cut(s)	279, 349, 381, 822
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	256, 601, 762
BstKTI	GATC	7 cut(s)	84, 187, 367, 387, 421, 536, 712
BstMAI	GTCTC	1 cut(s)	845
BstMBI	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 289, 680
BstNI	CCWGG	2 cut(s)	703, 812
BstPAI	GACNNNNGTC	1 cut(s)	824
BstSCI	CCNGG	2 cut(s)	701, 810
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	115, 209
BstX2I	RGATCY	2 cut(s)	384, 709
BstYI	RGATCY	2 cut(s)	384, 709
Bsu15I	ATCGAT	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	228, 242
BsuTUI	ATCGAT	1 cut(s)	878
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	256, 601, 762
BtsIMutI	CAGTG	2 cut(s)	462, 638
Cac8I	GCNNGC	2 cut(s)	321, 639
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	915
ClaI	ATCGAT	1 cut(s)	878
CseI	GACGC	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	810
Csp6I	GTAC	1 cut(s)	666
CspAI	ACCGGT	1 cut(s)	73
CviAII	CATG	5 cut(s)	22, 51, 230, 540, 841
CviQI	GTAC	1 cut(s)	666
DdeI	CTNAG	4 cut(s)	279, 349, 381, 822
DpnI	GATC	7 cut(s)	83, 186, 366, 386, 420, 535, 711
DpnII	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
EaeI	YGGCCR	2 cut(s)	226, 240
Eco130I	CCWWGG	2 cut(s)	229, 243
Eco47I	GGWCC	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	701, 810
EcoT14I	CCWWGG	2 cut(s)	229, 243
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	2 cut(s)	229, 243
FaeI	CATG	5 cut(s)	25, 54, 233, 543, 844
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	5 cut(s)	21, 50, 229, 539, 840
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	129, 223, 226
FokI	GGATG	3 cut(s)	263, 608, 769
Fsp4HI	GCNGC	3 cut(s)	129, 223, 226
FspBI	CTAG	4 cut(s)	155, 377, 407, 452
GluI	GCNGC	3 cut(s)	129, 223, 226
GsaI	CCCAGC	1 cut(s)	657
HaeIII	GGCC	2 cut(s)	228, 242
HapII	CCGG	2 cut(s)	74, 921
HgaI	GACGC	1 cut(s)	282
Hin1II	CATG	5 cut(s)	25, 54, 233, 543, 844
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	5 cut(s)	35, 104, 430, 695, 820
HpaII	CCGG	2 cut(s)	74, 921
HphI	GGTGA	3 cut(s)	482, 781, 878
Hpy166II	GTNNAC	4 cut(s)	307, 546, 641, 790
Hpy188I	TCNGA	5 cut(s)	195, 280, 399, 418, 662
Hpy188III	TCNNGA	4 cut(s)	89, 176, 434, 508
Hpy8I	GTNNAC	4 cut(s)	307, 546, 641, 790
HpyAV	CCTTC	2 cut(s)	394, 770
HpyCH4III	ACNGT	3 cut(s)	99, 470, 946
HpyCH4IV	ACGT	2 cut(s)	58, 361
HpyCH4V	TGCA	4 cut(s)	138, 641, 674, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 289, 680
HpyF3I	CTNAG	4 cut(s)	279, 349, 381, 822
HpySE526I	ACGT	2 cut(s)	58, 361
Hsp92II	CATG	5 cut(s)	25, 54, 233, 543, 844
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
LmnI	GCTCC	2 cut(s)	400, 799
Lsp1109I	GCAGC	2 cut(s)	115, 209
LweI	GCATC	1 cut(s)	541
MabI	ACCWGGT	1 cut(s)	810
MaeI	CTAG	4 cut(s)	155, 377, 407, 452
MaeII	ACGT	2 cut(s)	58, 361
MaeIII	GTNAC	5 cut(s)	470, 769, 817, 832, 866
MalI	GATC	7 cut(s)	83, 186, 366, 386, 420, 535, 711
MboI	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
MboII	GAAGA	4 cut(s)	80, 405, 523, 857
MflI	RGATCY	2 cut(s)	384, 709
MhlI	GDGCHC	1 cut(s)	643
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	4 cut(s)	28, 166, 582, 648
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	2 cut(s)	81, 777
MnlI	CCTC	6 cut(s)	354, 470, 524, 760, 823, 928
Mox20I	TGGCCA	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	2 cut(s)	645, 723
MslI	CAYNNNNRTG	1 cut(s)	839
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	2 cut(s)	74, 921
MspR9I	CCNGG	2 cut(s)	703, 812
Mva1269I	GAATGC	2 cut(s)	455, 766
MvaI	CCWGG	2 cut(s)	703, 812
MwoI	GCNNNNNNNGC	3 cut(s)	231, 289, 680
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
NlaIII	CATG	5 cut(s)	25, 54, 233, 543, 844
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	5 cut(s)	470, 769, 817, 832, 866
NsiI	ATGCAT	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	942
PctI	GAATGC	2 cut(s)	455, 766
PfeI	GAWTC	4 cut(s)	35, 104, 430, 695
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	130, 224, 227
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
PshAI	GACNNNNGTC	1 cut(s)	824
Psp6I	CCWGG	2 cut(s)	701, 810
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	701, 810
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	915
PsuI	RGATCY	2 cut(s)	384, 709
RsaI	GTAC	1 cut(s)	667
RsaNI	GTAC	1 cut(s)	666
RseI	CAYNNNNRTG	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	645, 723
SatI	GCNGC	3 cut(s)	129, 223, 226
Sau3AI	GATC	7 cut(s)	81, 184, 364, 384, 418, 533, 709
Sau96I	GGNCC	1 cut(s)	915
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	2 cut(s)	703, 812
SduI	GDGCHC	1 cut(s)	643
SexAI	ACCWGGT	1 cut(s)	810
SfaNI	GCATC	1 cut(s)	541
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	1 cut(s)	915
SmiMI	CAYNNNNRTG	1 cut(s)	839
Sse9I	AATT	4 cut(s)	28, 166, 582, 648
SsiI	CCGC	3 cut(s)	15, 225, 764
SspMI	CTAG	4 cut(s)	155, 377, 407, 452
StyD4I	CCNGG	2 cut(s)	701, 810
StyI	CCWWGG	2 cut(s)	229, 243
TaaI	ACNGT	3 cut(s)	99, 470, 946
TaiI	ACGT	2 cut(s)	61, 364
TaqI	TCGA	4 cut(s)	357, 615, 828, 878
TasI	AATT	4 cut(s)	28, 166, 582, 648
TatI	WGTACW	1 cut(s)	665
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	4 cut(s)	35, 104, 430, 695
Tru1I	TTAA	2 cut(s)	645, 723
Tru9I	TTAA	2 cut(s)	645, 723
TscAI	CASTG	2 cut(s)	469, 638
TseFI	GTSAC	5 cut(s)	470, 769, 817, 832, 866
TseI	GCWGC	2 cut(s)	128, 222
Tsp45I	GTSAC	5 cut(s)	470, 769, 817, 832, 866
TspDTI	ATGAA	3 cut(s)	38, 773, 850
TspGWI	ACGGA	2 cut(s)	608, 788
TspRI	CASTG	2 cut(s)	469, 638
VneI	GTGCAC	1 cut(s)	639
VpaK11BI	GGWCC	1 cut(s)	915
XspI	CTAG	4 cut(s)	155, 377, 407, 452
ZrmI	AGTACT	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.