Rh6BG284100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016259
Physical Location & Seq
Forward (+)
50766168 .. 50776504
10337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG284100.1

Sequence Viewer

Length: 813 bp
ATGAGCAACGTTTCTTCAGATTCTAATTATTCAGATCCAGCAGCAACATTCAACGGATGGGAAGGAACCGCAAATTTGAATCATTCAAATTCATTAATAGCGTGGAACCGATGGTGCCCTAGTACTAGTTATGATAACGTTGTGGCCTCAGTAATTGAATGGGAACGTCTGCCAGAAGAACTGGTTGTGTTGATTCTGGATAAACTGTTGGAATCCATTGACTATGTTCGCTTCGCTGCTGTTTGCAAAGAATGCTATCGTCTGGCTAAAGAGAACTCAAAAGAAAACAGAGAAGTCATCTCATGGCTATTCACTACCCAAGAATATGAAATTCTTCTTTGCTTACTGCTGCCTCTAGGAAGGTTGGTTGGCCTTATATCTCAGTCTGGGGCTTCTTTGATTCTGGGACTCGATTCTTTCACATATTTGGGCGCAATGACACCGAGGACCATCATACTTACTTATCTTCGATACACTATGCATTGTGACATTGATTTGCTGCAACTAGTTGTATTGGGTGAAAAATTGGATGAAGATCAAGAAAGGACTCAATTTATTCGCAAGGTGGTCGGTGATGTCGGGGATGGTGGCCGGATCATGATGGCATGGTGGCTGGTTGACGATGATTCCGAGCTAGCAGTCGTTTGTGGTGCAGGTGTTGTAGCTGCCAGCGTGGAAGCTAAGGTTTTTGTTTGGGCTTCTAGGCTATGGATTTGTGCAATTGGTATTGGGCCCTGGGCTTATGATATTGGGCTTAAACTCTTTGCTGATAATATCGCGGTTACCCCTTCTCATTTAGGTATTTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

270

Amino Acids

30.07

Weight (kDa)

4.58

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 114
AccII CGCG 1 cut(s) 779
AciI CCGC 2 cut(s) 69, 779
AclI AACGTT 2 cut(s) 9, 138
AclWI GGATC 2 cut(s) 29, 602
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 3 cut(s) 73, 88, 330
AfaI GTAC 1 cut(s) 124
AgsI TTSAA 4 cut(s) 52, 79, 87, 158
AhlI ACTAGT 2 cut(s) 125, 505
AjnI CCWGG 1 cut(s) 734
AluBI AGCT 3 cut(s) 634, 665, 680
AluI AGCT 3 cut(s) 634, 665, 680
AlwI GGATC 2 cut(s) 29, 602
AoxI GGCC 4 cut(s) 144, 370, 589, 731
ApaI GGGCCC 1 cut(s) 735
ApeKI GCWGC 5 cut(s) 41, 236, 349, 499, 665
ApoI RAATTY 3 cut(s) 73, 88, 330
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 3 cut(s) 447, 731, 732
AsuHPI GGTGA 2 cut(s) 530, 584
AsuNHI GCTAGC 1 cut(s) 634
AvaII GGWCC 1 cut(s) 447
BaeGI GKGCMC 2 cut(s) 119, 735
BanI GGYRCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 735
BbvI GCAGC 5 cut(s) 53, 223, 336, 486, 652
BccI CCATC 5 cut(s) 51, 105, 458, 578, 595
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BciT130I CCWGG 1 cut(s) 736
BcuI ACTAGT 2 cut(s) 125, 505
BfaI CTAG 6 cut(s) 120, 126, 356, 506, 635, 702
BfuAI ACCTGC 1 cut(s) 644
BisI GCNGC 5 cut(s) 42, 237, 350, 500, 666
BlsI GCNGC 5 cut(s) 43, 238, 351, 501, 667
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 736
Bme18I GGWCC 1 cut(s) 447
BmgT120I GGNCC 3 cut(s) 447, 731, 732
BmiI GGNNCC 4 cut(s) 67, 107, 116, 733
BmrFI CCNGG 1 cut(s) 736
BmtI GCTAGC 1 cut(s) 638
Bpu10I CCTNAGC 1 cut(s) 681
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 443, 734, 735
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 1 cut(s) 736
BseDI CCNNGG 3 cut(s) 443, 734, 735
BseGI GGATG 3 cut(s) 62, 535, 589
BseJI GATNNNNATC 1 cut(s) 534
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 162, 395
BseNI ACTGG 1 cut(s) 186
BseSI GKGCMC 2 cut(s) 119, 735
BseXI GCAGC 5 cut(s) 53, 223, 336, 486, 652
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 4 cut(s) 146, 372, 591, 733
BshNI GGYRCC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 4 cut(s) 146, 372, 591, 733
Bsp120I GGGCCC 1 cut(s) 731
Bsp1286I GDGCHC 2 cut(s) 119, 735
Bsp143I GATC 3 cut(s) 34, 535, 594
BspACI CCGC 2 cut(s) 69, 779
BspANI GGCC 4 cut(s) 146, 372, 591, 733
BspCNI CTCAG 2 cut(s) 161, 394
BspFNI CGCG 1 cut(s) 779
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 4 cut(s) 67, 107, 116, 733
BspMI ACCTGC 1 cut(s) 644
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 2 cut(s) 29, 602
BspT107I GGYRCC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 443, 734, 735
BssMI GATC 3 cut(s) 34, 535, 594
Bst2UI CCWGG 1 cut(s) 736
Bst4CI ACNGT 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 636, 670
BstDEI CTNAG 3 cut(s) 148, 381, 681
BstEII GGTNACC 1 cut(s) 781
BstF5I GGATG 3 cut(s) 62, 535, 589
BstFNI CGCG 1 cut(s) 779
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 3 cut(s) 37, 538, 597
BstMBI GATC 3 cut(s) 34, 535, 594
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 736
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 734
BstSLI GKGCMC 2 cut(s) 119, 735
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 5 cut(s) 53, 223, 336, 486, 652
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 4 cut(s) 146, 372, 591, 733
BtsCI GGATG 3 cut(s) 62, 535, 589
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 2 cut(s) 636, 670
CciI TCATGA 1 cut(s) 597
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 447, 731, 732
Csp6I GTAC 1 cut(s) 123
CviAII CATG 3 cut(s) 303, 598, 606
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 3 cut(s) 148, 381, 681
DpnI GATC 3 cut(s) 36, 537, 596
DpnII GATC 3 cut(s) 34, 535, 594
EaeI YGGCCR 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 735
Eco47I GGWCC 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 732
EcoO65I GGTNACC 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 734
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 735
FaeI CATG 3 cut(s) 306, 601, 609
FaqI GGGAC 1 cut(s) 420
FatI CATG 3 cut(s) 302, 597, 605
Fnu4HI GCNGC 5 cut(s) 42, 237, 350, 500, 666
FokI GGATG 3 cut(s) 69, 542, 596
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 5 cut(s) 42, 237, 350, 500, 666
FspBI CTAG 6 cut(s) 120, 126, 356, 506, 635, 702
GlaI GCGC 1 cut(s) 433
GluI GCNGC 5 cut(s) 42, 237, 350, 500, 666
HaeIII GGCC 4 cut(s) 146, 372, 591, 733
HapII CCGG 1 cut(s) 592
HhaI GCGC 1 cut(s) 434
Hin1II CATG 3 cut(s) 306, 601, 609
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 9 cut(s) 20, 79, 193, 212, 400, 408, 413, 547, 626
HpaII CCGG 1 cut(s) 592
HphI GGTGA 2 cut(s) 530, 584
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 3 cut(s) 19, 34, 631
Hpy188III TCNNGA 3 cut(s) 197, 539, 598
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 3 cut(s) 56, 354, 798
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 3 cut(s) 9, 138, 166
HpyCH4V TGCA 5 cut(s) 246, 481, 502, 653, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 3 cut(s) 148, 381, 681
HpySE526I ACGT 3 cut(s) 9, 138, 166
Hsp92II CATG 3 cut(s) 306, 601, 609
HspAI GCGC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 34, 535, 594
Lsp1109I GCAGC 5 cut(s) 53, 223, 336, 486, 652
MaeI CTAG 6 cut(s) 120, 126, 356, 506, 635, 702
MaeII ACGT 3 cut(s) 9, 138, 166
MaeIII GTNAC 2 cut(s) 485, 781
MalI GATC 3 cut(s) 36, 537, 596
MboI GATC 3 cut(s) 34, 535, 594
MboII GAAGA 5 cut(s) 6, 188, 326, 458, 545
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 119, 735
MluCI AATT 9 cut(s) 25, 73, 88, 153, 330, 524, 551, 720, 807
MlyI GAGTC 2 cut(s) 402, 541
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 3 cut(s) 157, 363, 438
Mph1103I ATGCAT 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 4 cut(s) 95, 756, 806, 811
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 1 cut(s) 736
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 736
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 3 cut(s) 34, 535, 594
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 3 cut(s) 306, 601, 609
NlaIV GGNNCC 4 cut(s) 67, 107, 116, 733
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 483
PagI TCATGA 1 cut(s) 597
PaqCI CACCTGC 1 cut(s) 644
PasI CCCWGGG 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 7 cut(s) 20, 79, 193, 212, 400, 413, 626
PkrI GCNGC 5 cut(s) 43, 238, 351, 501, 667
PleI GAGTC 2 cut(s) 402, 541
PpsI GAGTC 2 cut(s) 402, 541
PshBI ATTAAT 1 cut(s) 95
Psp1406I AACGTT 2 cut(s) 9, 138
Psp6I CCWGG 1 cut(s) 734
PspEI GGTNACC 1 cut(s) 781
PspGI CCWGG 1 cut(s) 734
PspN4I GGNNCC 4 cut(s) 67, 107, 116, 733
PspOMI GGGCCC 1 cut(s) 731
PspPI GGNCC 3 cut(s) 447, 731, 732
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SaqAI TTAA 4 cut(s) 95, 756, 806, 811
SatI GCNGC 5 cut(s) 42, 237, 350, 500, 666
Sau3AI GATC 3 cut(s) 34, 535, 594
Sau96I GGNCC 3 cut(s) 447, 731, 732
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 2 cut(s) 402, 541
ScrFI CCNGG 1 cut(s) 736
SduI GDGCHC 2 cut(s) 119, 735
SinI GGWCC 1 cut(s) 447
SpeI ACTAGT 2 cut(s) 125, 505
Sse9I AATT 9 cut(s) 25, 73, 88, 153, 330, 524, 551, 720, 807
SsiI CCGC 2 cut(s) 69, 779
SspMI CTAG 6 cut(s) 120, 126, 356, 506, 635, 702
StyD4I CCNGG 1 cut(s) 734
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 3 cut(s) 12, 141, 169
TaqI TCGA 2 cut(s) 411, 469
TasI AATT 9 cut(s) 25, 73, 88, 153, 330, 524, 551, 720, 807
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 7 cut(s) 20, 79, 193, 212, 400, 413, 626
Tru1I TTAA 4 cut(s) 95, 756, 806, 811
Tru9I TTAA 4 cut(s) 95, 756, 806, 811
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 5 cut(s) 41, 236, 349, 499, 665
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 81, 342, 546
TspGWI ACGGA 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 447
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 3 cut(s) 73, 88, 330
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 6 cut(s) 120, 126, 356, 506, 635, 702
ZrmI AGTACT 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.