Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016259

Physical Location & Seq

Genomic Coordinates Reverse (-)

47316814 .. 47319884

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGTTTTGCTTTACTAGTTATGATAACGTTGTGGCCTCAGTAATTGAATGGGAACGTCTGCCAGAAGAACTGGTTGTGTTGATTCTGGATAAACTGTTGGAATCGATTGACTATGTTCGCTTCGCTGCTGTTTGCAAAGAATGGTATCGTCTGGCTAAAGAGAAGTATAGCCGGGACGTAGAGCGCTGGTATCACCGCGCACGTCCTCCCATGCTCTTGCTTCCTCCTACCCCAACCCTAGAACGCAGTGTTCTGTTCAGCTTTTCTCAAGGAACAGCATACAAGAATATTCAGTTACAAGTTCCTATTCCTAGAGAGGCCGGTTTGACAGCCGATATCTTCTGTTGTGGCTCCGGCCACAGTTGGTTGGCCAAAGTGGGTGTATATCATGATCATCATCAACTCCCGGAGCCTGTATGGTATATAGAACTCGTCAACCCTTTTCGCCAAGCAACAACTTTTAGTGACCATCCCATCCCTTTCGTTCAACTAGAAAGTAATCATATATATTTCCCTGAAGCTCCGAAGGTTATATTGTCCTCTGATCCAGCCTTGAATCCGAATAATTTTTGGGTTCTAGCATTCCTCACTGAAGGTTCCCAGCTTGCTTTCCATAAGAGAGGAAAAGATGGCTGGACTCGTGTAAAAAGAAGAGGAGCGCGGTTTACTGATGCTATATTTTATAAAGGACGTTTCTATGCAATTGATAACCGGCATGGACATATTCTATCATTCGATGTTGAAGAAGCCAAGCGACGTGTACATAGAATTGCTGGGTTCGAAAGTGATTCAGGGCGCGCATATTTGGTAGAATCAACCAAGGGAGATCTATTGTGTCTTAAAAGAATTGTGAAATCGAGTGATCTAGGTAGGAAGAAGGTGACGCAGAGCTTCATGCTTTACAAGTTGGAGCTGGACAACCAATCATCATCCACAGTGACTCAGGTCGAGGTCACGAACATTGAAGACGAGGCTTTGTTTGTAGGTGACAATCCATCAGTATCTGTCTTGGCTTCAAACTTTTGTGGATGTCGACCGAATTCAATTTACTATACCGATGATTTGATGAATATTCCTGTATTTGGTTACAAAGAATTGCCTAGACATGAGCCGCTTGGAATAAAATATGATATGGGCATCTTTAGTTTAGCAGACAAGACTATTACGCCATATAATGGAAGGCACTTCTTACCTCCAATTTGGATTACGACACCCCCACCTTTCGATCCATTACCTGGACCAAACTCAACACAGCGGACAAGAGTAAGGAGTGAAGGATCAAACTCATTAGAGTTGACAAGAGTAAGCAAGGAAGACAAGAAGAAAAGGAGGCTTAAACATTGGCTTAGTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295

Protein Analysis

452

Amino Acids

52.0

Weight (kDa)

8.73

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	17 - 54	4.9e-08	F-box-like
Beta-prop_KIB1-4	PF03478	100 - 380	5.1e-43	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016259)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19290 FvH4_2g19380 FvH4_2g19460 FvH4_2g19490
rosa_chinensis	RchiOBHm_Chr5g0035781
rosa_laevigata	RLG00000012665
rosa_multiflora	Rmu_sc0002535.1_g000005 Rmu_sc0002535.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183490 Rroxscaffold_7G00183510 Rroxscaffold_7G00183580
rosa_samantha	Rh6BG283900 Rh6BG284100
rosa_wichuraiana	Rw6G024330 Rw6G024360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
AccB7I	CCANNNNNTGG	2 cut(s)	1175, 1235
AccI	GTMKAC	1 cut(s)	1033
AccII	CGCG	3 cut(s)	198, 661, 798
AciI	CCGC	4 cut(s)	196, 661, 1112, 1255
AclI	AACGTT	1 cut(s)	27
AclWI	GGATC	3 cut(s)	539, 1220, 1285
AcoI	YGGCCR	2 cut(s)	355, 369
AcsI	RAATTY	1 cut(s)	1039
AcuI	CTGAAG	2 cut(s)	537, 612
AfaI	GTAC	1 cut(s)	762
AfeI	AGCGCT	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	1082, 1175, 1235
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	7 cut(s)	47, 488, 556, 743, 965, 1017, 1044
AhlI	ACTAGT	1 cut(s)	14
AjiI	CACGTC	2 cut(s)	203, 758
AjnI	CCWGG	1 cut(s)	1234
AluBI	AGCT	5 cut(s)	261, 521, 604, 891, 913
AluI	AGCT	5 cut(s)	261, 521, 604, 891, 913
AlwI	GGATC	3 cut(s)	539, 1220, 1285
AlwNI	CAGNNNCTG	1 cut(s)	1004
Aor51HI	AGCGCT	1 cut(s)	185
AoxI	GGCC	4 cut(s)	33, 318, 355, 369
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	1039
AspLEI	GCGC	5 cut(s)	186, 200, 661, 798, 800
AspS9I	GGNCC	1 cut(s)	1238
AsuC2I	CCSGG	2 cut(s)	173, 407
AsuHPI	GGTGA	3 cut(s)	185, 892, 998
AsuII	TTCGAA	1 cut(s)	780
AvaII	GGWCC	1 cut(s)	1238
BalI	TGGCCA	1 cut(s)	371
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	972, 1320
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	4 cut(s)	477, 482, 623, 1003
BciT130I	CCWGG	1 cut(s)	1236
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	2 cut(s)	173, 407
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	7 cut(s)	15, 239, 312, 491, 578, 866, 1101
BfoI	RGCGCY	1 cut(s)	187
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	2 cut(s)	126, 1112
BlsI	GCNGC	2 cut(s)	127, 1113
Bme1390I	CCNGG	3 cut(s)	173, 407, 1236
Bme18I	GGWCC	1 cut(s)	1238
BmgBI	CACGTC	2 cut(s)	203, 758
BmgT120I	GGNCC	1 cut(s)	1238
BmiI	GGNNCC	3 cut(s)	352, 411, 598
BmrFI	CCNGG	3 cut(s)	173, 407, 1236
BmsI	GCATC	2 cut(s)	661, 1146
BoxI	GACNNNNGTC	1 cut(s)	944
BpiI	GAAGAC	2 cut(s)	972, 1320
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	173, 407
Bsa29I	ATCGAT	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	819
Bsc4I	CCNNNNNNNGG	3 cut(s)	1082, 1175, 1235
Bse118I	RCCGGY	2 cut(s)	320, 711
Bse1I	ACTGG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	1236
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	819
BseGI	GGATG	4 cut(s)	469, 474, 929, 1034
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	1082, 1175, 1235
BseMII	CTCAG	2 cut(s)	51, 956
BseNI	ACTGG	1 cut(s)	75
BsePI	GCGCGC	1 cut(s)	796
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	1 cut(s)	112
BseYI	CCCAGC	2 cut(s)	600, 773
Bsh1236I	CGCG	3 cut(s)	198, 661, 798
Bsh1285I	CGRYCG	1 cut(s)	1037
BshFI	GGCC	4 cut(s)	35, 320, 357, 371
BshVI	ATCGAT	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	1037
BsiSI	CCGG	5 cut(s)	172, 321, 354, 407, 712
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	1082, 1175, 1235
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	4 cut(s)	35, 320, 357, 371
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
BspACI	CCGC	4 cut(s)	196, 661, 1112, 1255
BspANI	GGCC	4 cut(s)	35, 320, 357, 371
BspCNI	CTCAG	2 cut(s)	50, 955
BspDI	ATCGAT	1 cut(s)	104
BspFNI	CGCG	3 cut(s)	198, 661, 798
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	352, 411, 598
BspPI	GGATC	3 cut(s)	539, 1220, 1285
BspT104I	TTCGAA	1 cut(s)	780
BsrFI	RCCGGY	2 cut(s)	320, 711
BsrGI	TGTACA	1 cut(s)	760
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	2 cut(s)	320, 711
BssECI	CCNNGG	1 cut(s)	819
BssHII	GCGCGC	1 cut(s)	796
BssMI	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	819
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	1236
Bst4CI	ACNGT	3 cut(s)	96, 362, 937
Bst6I	CTCTTC	1 cut(s)	646
BstAUI	TGTACA	1 cut(s)	760
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	2 cut(s)	606, 798
BstDEI	CTNAG	3 cut(s)	37, 942, 1346
BstF5I	GGATG	4 cut(s)	469, 474, 929, 1034
BstFNI	CGCG	3 cut(s)	198, 661, 798
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	5 cut(s)	186, 200, 661, 798, 800
BstKTI	GATC	6 cut(s)	394, 547, 829, 865, 1228, 1280
BstMBI	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
BstMCI	CGRYCG	1 cut(s)	1037
BstNI	CCWGG	1 cut(s)	1236
BstPAI	GACNNNNGTC	1 cut(s)	944
BstSCI	CCNGG	3 cut(s)	171, 405, 1234
BstUI	CGCG	3 cut(s)	198, 661, 798
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	2 cut(s)	972, 1320
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
Bsu15I	ATCGAT	1 cut(s)	104
BsuRI	GGCC	4 cut(s)	35, 320, 357, 371
BsuTUI	ATCGAT	1 cut(s)	104
BtrI	CACGTC	2 cut(s)	203, 758
BtsCI	GGATG	4 cut(s)	469, 474, 929, 1034
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	3 cut(s)	253, 588, 942
Cac8I	GCNNGC	2 cut(s)	606, 798
CaiI	CAGNNNCTG	1 cut(s)	1004
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	5 cut(s)	186, 200, 661, 798, 800
Cfr10I	RCCGGY	2 cut(s)	320, 711
Cfr13I	GGNCC	1 cut(s)	1238
ClaI	ATCGAT	1 cut(s)	104
CseI	GACGC	1 cut(s)	892
Csp6I	GTAC	1 cut(s)	761
CviAII	CATG	5 cut(s)	211, 389, 716, 895, 1106
CviQI	GTAC	1 cut(s)	761
DdeI	CTNAG	3 cut(s)	37, 942, 1346
DpnI	GATC	6 cut(s)	393, 546, 828, 864, 1227, 1279
DpnII	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
EaeI	YGGCCR	2 cut(s)	355, 369
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	819
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	1238
Eco47III	AGCGCT	1 cut(s)	185
Eco57I	CTGAAG	2 cut(s)	537, 612
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	1 cut(s)	1234
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	5 cut(s)	214, 392, 719, 898, 1109
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	5 cut(s)	210, 388, 715, 894, 1105
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	1033
Fnu4HI	GCNGC	2 cut(s)	126, 1112
FokI	GGATG	4 cut(s)	456, 461, 916, 1041
Fsp4HI	GCNGC	2 cut(s)	126, 1112
FspBI	CTAG	7 cut(s)	15, 239, 312, 491, 578, 866, 1101
GlaI	GCGC	5 cut(s)	185, 199, 660, 797, 799
GluI	GCNGC	2 cut(s)	126, 1112
GsaI	CCCAGC	2 cut(s)	604, 777
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	4 cut(s)	35, 320, 357, 371
HapII	CCGG	5 cut(s)	172, 321, 354, 407, 712
HgaI	GACGC	1 cut(s)	892
HhaI	GCGC	5 cut(s)	186, 200, 661, 798, 800
Hin1II	CATG	5 cut(s)	214, 392, 719, 898, 1109
Hin6I	GCGC	5 cut(s)	184, 198, 659, 796, 798
HinP1I	GCGC	5 cut(s)	184, 198, 659, 796, 798
HincII	GTYRAC	3 cut(s)	436, 1034, 1296
HindII	GTYRAC	3 cut(s)	436, 1034, 1296
HinfI	GANTC	7 cut(s)	82, 101, 556, 637, 788, 812, 940
HpaII	CCGG	5 cut(s)	172, 321, 354, 407, 712
HphI	GGTGA	3 cut(s)	185, 892, 998
Hpy166II	GTNNAC	5 cut(s)	436, 666, 761, 1034, 1296
Hpy188I	TCNGA	4 cut(s)	525, 544, 561, 1358
Hpy188III	TCNNGA	3 cut(s)	86, 389, 955
Hpy8I	GTNNAC	5 cut(s)	436, 666, 761, 1034, 1296
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	5 cut(s)	520, 587, 871, 1173, 1268
HpyCH4III	ACNGT	3 cut(s)	96, 362, 937
HpyCH4IV	ACGT	6 cut(s)	27, 55, 177, 202, 691, 757
HpyCH4V	TGCA	2 cut(s)	135, 701
HpyF3I	CTNAG	3 cut(s)	37, 942, 1346
HpySE526I	ACGT	6 cut(s)	27, 55, 177, 202, 691, 757
Hsp92II	CATG	5 cut(s)	214, 392, 719, 898, 1109
HspAI	GCGC	5 cut(s)	184, 198, 659, 796, 798
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
LmnI	GCTCC	5 cut(s)	356, 409, 526, 656, 910
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	661, 1146
MaeI	CTAG	7 cut(s)	15, 239, 312, 491, 578, 866, 1101
MaeII	ACGT	6 cut(s)	27, 55, 177, 202, 691, 757
MaeIII	GTNAC	7 cut(s)	294, 464, 880, 937, 952, 986, 1085
MalI	GATC	6 cut(s)	393, 546, 828, 864, 1227, 1279
MboI	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
MboII	GAAGA	8 cut(s)	77, 331, 663, 755, 886, 977, 1325, 1333
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	826
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	9 cut(s)	42, 565, 702, 768, 846, 1039, 1044, 1094, 1197
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	631, 934
MmeI	TCCRAC	2 cut(s)	78, 888
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	2 cut(s)	840, 1335
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	1255
MspI	CCGG	5 cut(s)	172, 321, 354, 407, 712
MspR9I	CCNGG	3 cut(s)	173, 407, 1236
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	1236
MvnI	CGCG	3 cut(s)	198, 661, 798
NciI	CCSGG	2 cut(s)	173, 407
NdeII	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
NlaIII	CATG	5 cut(s)	214, 392, 719, 898, 1109
NlaIV	GGNNCC	3 cut(s)	352, 411, 598
NmuCI	GTSAC	5 cut(s)	464, 880, 937, 952, 986
NspV	TTCGAA	1 cut(s)	780
PagI	TCATGA	1 cut(s)	388
PauI	GCGCGC	1 cut(s)	796
PctI	GAATGC	1 cut(s)	581
PfeI	GAWTC	5 cut(s)	82, 101, 556, 788, 812
PflMI	CCANNNNNTGG	2 cut(s)	1175, 1235
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	127, 1113
PleI	GAGTC	2 cut(s)	631, 934
PpsI	GAGTC	2 cut(s)	631, 934
PshAI	GACNNNNGTC	1 cut(s)	944
PsiI	TTATAA	1 cut(s)	684
Psp1406I	AACGTT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	1234
PspFI	CCCAGC	2 cut(s)	600, 773
PspGI	CCWGG	1 cut(s)	1234
PspN4I	GGNNCC	3 cut(s)	352, 411, 598
PspPI	GGNCC	1 cut(s)	1238
PstNI	CAGNNNCTG	1 cut(s)	1004
PsuI	RGATCY	1 cut(s)	826
PteI	GCGCGC	1 cut(s)	796
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
SalI	GTCGAC	1 cut(s)	1032
SaqAI	TTAA	2 cut(s)	840, 1335
SatI	GCNGC	2 cut(s)	126, 1112
Sau3AI	GATC	6 cut(s)	391, 544, 826, 862, 1225, 1277
Sau96I	GGNCC	1 cut(s)	1238
SchI	GAGTC	2 cut(s)	631, 934
ScrFI	CCNGG	3 cut(s)	173, 407, 1236
SfaNI	GCATC	2 cut(s)	661, 1146
SfuI	TTCGAA	1 cut(s)	780
SinI	GGWCC	1 cut(s)	1238
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	9 cut(s)	42, 565, 702, 768, 846, 1039, 1044, 1094, 1197
SsiI	CCGC	4 cut(s)	196, 661, 1112, 1255
SspI	AATATT	2 cut(s)	289, 1072
SspMI	CTAG	7 cut(s)	15, 239, 312, 491, 578, 866, 1101
StyD4I	CCNGG	3 cut(s)	171, 405, 1234
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	3 cut(s)	96, 362, 937
TaiI	ACGT	6 cut(s)	30, 58, 180, 205, 694, 760
TaqI	TCGA	7 cut(s)	104, 735, 780, 857, 948, 1033, 1224
TaqII	GACCGA	1 cut(s)	1051
TasI	AATT	9 cut(s)	42, 565, 702, 768, 846, 1039, 1044, 1094, 1197
TatI	WGTACW	1 cut(s)	760
TauI	GCSGC	1 cut(s)	1114
TfiI	GAWTC	5 cut(s)	82, 101, 556, 788, 812
Tru1I	TTAA	2 cut(s)	840, 1335
Tru9I	TTAA	2 cut(s)	840, 1335
TscAI	CASTG	3 cut(s)	253, 595, 942
TseFI	GTSAC	5 cut(s)	464, 880, 937, 952, 986
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	5 cut(s)	464, 880, 937, 952, 986
TspDTI	ATGAA	2 cut(s)	883, 1082
TspRI	CASTG	3 cut(s)	253, 595, 942
Van91I	CCANNNNNTGG	2 cut(s)	1175, 1235
VpaK11BI	GGWCC	1 cut(s)	1238
XapI	RAATTY	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	1033
XspI	CTAG	7 cut(s)	15, 239, 312, 491, 578, 866, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.