Rroxscaffold_7G00183490

Protein of unknown function (DUF295)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
22573973 .. 22575442
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183490.1

Sequence Viewer

Length: 1470 bp
ATGGGCAACGTTTCTTCAGATTCTAATTATTCAGATCCAGCAGCAACATTCAACGGATGGGAAGGAACCGCAAATTTGAACCATTCAAATTCATTAATAGAGTGGAACCGATGGTGCCCTAGTACTAGTTATGATAACGTTGTGGCCTCAGTAATTGAATGGGAACGTCTGCCAGAAGAACTGGTTGTGTTGATTCTGGATAAACTGTTGGAATCCATTGACTATGTTCGCTTCGCTGCTGTTTGCAAAGAATGGTATCGTCTGGCTAAAGAGAAGTATACCCGGGACGTAGAGCGCTGGTATCACCGCGCACGTCCTCCCATGCTCTTGCTTCCTCCTACCCCAACCCTAGAACGCAGTGTTCTGTTCAGCTTTTCTCAAGGAACAGCATACAAGAATATTCAGTTACAAGTTCCTATTCCTAAAGAGGCCGGTTTGACAGCCGATATCTTCTGTTGTGGCTCCGGCCACAGTTGGTTGGCCAAAGTGGGTGTATATCATGATCATCATCAACTCCCGGAGCCTGTATGGTATATAGAACTCGTCAACCCTTTTCGCCAAGCAACAACTTTTAGTGACCATCCCATCCCTTTCGTTCAACTCGAAAGTAATCATATATATTTCCCTGAAGCTCCGAAGGTTATATTGTCCTCTGATCCAGCCTTGAATCCGAATAATTTTTGGGTTCTAGCATTCCTCACTGAAGGTTCCCAGCTTGCTTTCCATAAGAGAGGAAAAGATGGCTGGACTCGTATAAAAAGAAGAGGAGCACGGTTTACTGATGCTATATTTTATAAAGGACGTTTCTATGCAATTGATAACCGGCATGGACATATTCTATCATTCGATGTTGAAGAAGCCAAGCGACGTGTACATAGAATTGCTGGGTTCGAAAGTGATTCAGGGCGAGCATACTTGGTAGAATCAACCAAGGGAGATCTATTGTGTCTTAAAAGAATTGTGAAATCGAGTGATATAGGTAGGAAGAAGGTGACGCAGAGCTTCATGCTTTACAAGTTGGAGCTGGACAACCAATCATCATCCACAGTGACTCAGGTCGAGGTCACGAACATTGAAGACGAGGCTTTGTTTGTAGGTGACACTCCATCGATATCTGTCTTGGCTTCAAACTTTTGTGGATGTCGACCGAATTCAATTTACTATACCGATGATTTGATGAATATTCCTGTATTTGGTTACAAAGAATTGCCTAGACATGAGCCGCAGGGAATAAAATATGATATGGGCATCTTTAGTTTAGCAGACAAGACTATTACGCCATTTAATGGAAGTCACTTCTTACCTCCAATTTGGATTACGACACCCCCACCTTTCGATCCATTACCTGGACCAAACTCAACACAGCGGACAAGAGGAAGGAGTGAAGGATCAAACTCATTAGAGTTGACAAGAGTAAGCAAGGAAAACAAGAAGAAAAGGAGGCTTAAACATTGGCTTAGTTGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

489

Amino Acids

55.87

Weight (kDa)

8.28

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 54 - 91 5.2e-08 F-box-like
Beta-prop_KIB1-4 PF03478 123 - 417 1.6e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 795
AccB1I GGYRCC 1 cut(s) 114
AccB7I CCANNNNNTGG 2 cut(s) 1286, 1346
AccI GTMKAC 2 cut(s) 278, 1144
AccII CGCG 1 cut(s) 309
AciI CCGC 4 cut(s) 69, 307, 1223, 1366
AclI AACGTT 2 cut(s) 9, 138
AclWI GGATC 4 cut(s) 29, 650, 1331, 1396
AcoI YGGCCR 2 cut(s) 466, 480
AcsI RAATTY 3 cut(s) 73, 88, 1150
AcuI CTGAAG 2 cut(s) 648, 723
AfaI GTAC 2 cut(s) 124, 873
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 1193, 1286, 1346
AflIII ACRYGT 1 cut(s) 868
AhlI ACTAGT 1 cut(s) 125
AjiI CACGTC 2 cut(s) 314, 869
AjnI CCWGG 1 cut(s) 1345
AluBI AGCT 5 cut(s) 372, 632, 715, 1002, 1024
AluI AGCT 5 cut(s) 372, 632, 715, 1002, 1024
Alw21I GWGCWC 1 cut(s) 772
AlwI GGATC 4 cut(s) 29, 650, 1331, 1396
Ama87I CYCGRG 1 cut(s) 282
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 4 cut(s) 144, 429, 466, 480
ApeKI GCWGC 2 cut(s) 41, 236
ApoI RAATTY 3 cut(s) 73, 88, 1150
AseI ATTAAT 1 cut(s) 95
AspLEI GCGC 2 cut(s) 297, 311
AspS9I GGNCC 1 cut(s) 1349
AsuC2I CCSGG 3 cut(s) 283, 284, 518
AsuHPI GGTGA 3 cut(s) 296, 1003, 1109
AsuII TTCGAA 1 cut(s) 891
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 1349
BaeGI GKGCMC 1 cut(s) 119
BalI TGGCCA 1 cut(s) 482
BanI GGYRCC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 1083
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 2 cut(s) 53, 223
BccI CCATC 6 cut(s) 51, 105, 588, 593, 734, 1114
BciT130I CCWGG 1 cut(s) 1347
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 3 cut(s) 283, 284, 518
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 5 cut(s) 120, 126, 350, 689, 1212
BfoI RGCGCY 1 cut(s) 298
BglII AGATCT 1 cut(s) 937
BisI GCNGC 3 cut(s) 42, 237, 1223
BlsI GCNGC 3 cut(s) 43, 238, 1224
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 4 cut(s) 283, 284, 518, 1347
Bme18I GGWCC 1 cut(s) 1349
BmeT110I CYCGRG 1 cut(s) 282
BmgBI CACGTC 2 cut(s) 314, 869
BmgT120I GGNCC 1 cut(s) 1349
BmiI GGNNCC 6 cut(s) 67, 107, 116, 463, 522, 709
BmrFI CCNGG 4 cut(s) 283, 284, 518, 1347
BmsI GCATC 2 cut(s) 772, 1257
BoxI GACNNNNGTC 1 cut(s) 1055
BpiI GAAGAC 1 cut(s) 1083
Bpu14I TTCGAA 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 3 cut(s) 283, 284, 518
Bsa29I ATCGAT 1 cut(s) 1109
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 282, 930
Bsc4I CCNNNNNNNGG 3 cut(s) 1193, 1286, 1346
Bse118I RCCGGY 2 cut(s) 431, 822
Bse1I ACTGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 1 cut(s) 1347
BseCI ATCGAT 1 cut(s) 1109
BseDI CCNNGG 2 cut(s) 282, 930
BseGI GGATG 5 cut(s) 62, 580, 585, 1040, 1145
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 3 cut(s) 1193, 1286, 1346
BseMII CTCAG 2 cut(s) 162, 1067
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 780
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 2 cut(s) 53, 223
BseYI CCCAGC 2 cut(s) 711, 884
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 1148
BshFI GGCC 4 cut(s) 146, 431, 468, 482
BshNI GGYRCC 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 1109
BsiEI CGRYCG 1 cut(s) 1148
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 5 cut(s) 283, 432, 465, 518, 823
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 1193, 1286, 1346
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 4 cut(s) 146, 431, 468, 482
BsoBI CYCGRG 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 891
Bsp1286I GDGCHC 2 cut(s) 119, 772
Bsp1407I TGTACA 1 cut(s) 871
Bsp143I GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
BspACI CCGC 4 cut(s) 69, 307, 1223, 1366
BspANI GGCC 4 cut(s) 146, 431, 468, 482
BspCNI CTCAG 2 cut(s) 161, 1066
BspDI ATCGAT 1 cut(s) 1109
BspFNI CGCG 1 cut(s) 309
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 6 cut(s) 67, 107, 116, 463, 522, 709
BspPI GGATC 4 cut(s) 29, 650, 1331, 1396
BspT104I TTCGAA 1 cut(s) 891
BspT107I GGYRCC 1 cut(s) 114
BsrFI RCCGGY 2 cut(s) 431, 822
BsrGI TGTACA 1 cut(s) 871
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 2 cut(s) 431, 822
BssECI CCNNGG 2 cut(s) 282, 930
BssMI GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
BssNAI GTATAC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 930
Bst1107I GTATAC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 1347
Bst4CI ACNGT 4 cut(s) 207, 473, 774, 1048
Bst6I CTCTTC 1 cut(s) 757
BstAUI TGTACA 1 cut(s) 871
BstBI TTCGAA 1 cut(s) 891
BstC8I GCNNGC 2 cut(s) 717, 909
BstDEI CTNAG 3 cut(s) 148, 1053, 1457
BstF5I GGATG 5 cut(s) 62, 580, 585, 1040, 1145
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 2 cut(s) 297, 311
BstKTI GATC 6 cut(s) 37, 505, 658, 940, 1339, 1391
BstMBI GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
BstMCI CGRYCG 1 cut(s) 1148
BstNI CCWGG 1 cut(s) 1347
BstPAI GACNNNNGTC 1 cut(s) 1055
BstSCI CCNGG 4 cut(s) 281, 282, 516, 1345
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 53, 223
BstV2I GAAGAC 1 cut(s) 1083
BstX2I RGATCY 2 cut(s) 34, 937
BstYI RGATCY 2 cut(s) 34, 937
BstZ17I GTATAC 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 1109
BsuRI GGCC 4 cut(s) 146, 431, 468, 482
BsuTUI ATCGAT 1 cut(s) 1109
BtrI CACGTC 2 cut(s) 314, 869
BtsCI GGATG 5 cut(s) 62, 580, 585, 1040, 1145
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 3 cut(s) 364, 699, 1053
Cac8I GCNNGC 2 cut(s) 717, 909
CciI TCATGA 1 cut(s) 499
CfoI GCGC 2 cut(s) 297, 311
Cfr10I RCCGGY 2 cut(s) 431, 822
Cfr13I GGNCC 1 cut(s) 1349
Cfr9I CCCGGG 1 cut(s) 282
ClaI ATCGAT 1 cut(s) 1109
CseI GACGC 1 cut(s) 1003
Csp6I GTAC 2 cut(s) 123, 872
CviAII CATG 5 cut(s) 322, 500, 827, 1006, 1217
CviQI GTAC 2 cut(s) 123, 872
DdeI CTNAG 3 cut(s) 148, 1053, 1457
DpnI GATC 6 cut(s) 36, 504, 657, 939, 1338, 1390
DpnII GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
EaeI YGGCCR 2 cut(s) 466, 480
Eam1104I CTCTTC 1 cut(s) 757
EarI CTCTTC 1 cut(s) 757
Eco130I CCWWGG 1 cut(s) 930
Eco32I GATATC 2 cut(s) 448, 1113
Eco47I GGWCC 1 cut(s) 1349
Eco47III AGCGCT 1 cut(s) 296
Eco57I CTGAAG 2 cut(s) 648, 723
Eco88I CYCGRG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 1150
EcoRII CCWGG 1 cut(s) 1345
EcoRV GATATC 2 cut(s) 448, 1113
EcoT14I CCWWGG 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 5 cut(s) 325, 503, 830, 1009, 1220
FaqI GGGAC 1 cut(s) 299
FatI CATG 5 cut(s) 321, 499, 826, 1005, 1216
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 2 cut(s) 278, 1144
Fnu4HI GCNGC 3 cut(s) 42, 237, 1223
FokI GGATG 5 cut(s) 69, 567, 572, 1027, 1152
Fsp4HI GCNGC 3 cut(s) 42, 237, 1223
FspBI CTAG 5 cut(s) 120, 126, 350, 689, 1212
GlaI GCGC 2 cut(s) 296, 310
GluI GCNGC 3 cut(s) 42, 237, 1223
GsaI CCCAGC 2 cut(s) 715, 888
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 4 cut(s) 146, 431, 468, 482
HapII CCGG 5 cut(s) 283, 432, 465, 518, 823
HgaI GACGC 1 cut(s) 1003
HhaI GCGC 2 cut(s) 297, 311
Hin1II CATG 5 cut(s) 325, 503, 830, 1009, 1220
Hin6I GCGC 2 cut(s) 295, 309
HinP1I GCGC 2 cut(s) 295, 309
HincII GTYRAC 3 cut(s) 547, 1145, 1407
HindII GTYRAC 3 cut(s) 547, 1145, 1407
HinfI GANTC 8 cut(s) 20, 193, 212, 667, 748, 899, 923, 1051
HpaII CCGG 5 cut(s) 283, 432, 465, 518, 823
HphI GGTGA 3 cut(s) 296, 1003, 1109
Hpy166II GTNNAC 6 cut(s) 279, 547, 777, 872, 1145, 1407
Hpy188I TCNGA 6 cut(s) 19, 34, 636, 655, 672, 1469
Hpy188III TCNNGA 3 cut(s) 197, 500, 1066
Hpy8I GTNNAC 6 cut(s) 279, 547, 777, 872, 1145, 1407
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 6 cut(s) 56, 631, 698, 982, 1371, 1379
HpyCH4III ACNGT 4 cut(s) 207, 473, 774, 1048
HpyCH4IV ACGT 7 cut(s) 9, 138, 166, 288, 313, 802, 868
HpyCH4V TGCA 2 cut(s) 246, 812
HpyF3I CTNAG 3 cut(s) 148, 1053, 1457
HpySE526I ACGT 7 cut(s) 9, 138, 166, 288, 313, 802, 868
Hsp92II CATG 5 cut(s) 325, 503, 830, 1009, 1220
HspAI GCGC 2 cut(s) 295, 309
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
LmnI GCTCC 5 cut(s) 467, 520, 637, 767, 1021
Lsp1109I GCAGC 2 cut(s) 53, 223
LweI GCATC 2 cut(s) 772, 1257
MaeI CTAG 5 cut(s) 120, 126, 350, 689, 1212
MaeII ACGT 7 cut(s) 9, 138, 166, 288, 313, 802, 868
MaeIII GTNAC 8 cut(s) 405, 575, 991, 1048, 1063, 1097, 1196, 1292
MalI GATC 6 cut(s) 36, 504, 657, 939, 1338, 1390
MboI GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
MboII GAAGA 8 cut(s) 6, 188, 442, 774, 866, 997, 1088, 1444
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 2 cut(s) 34, 937
MhlI GDGCHC 2 cut(s) 119, 772
MlsI TGGCCA 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 2 cut(s) 742, 1045
MmeI TCCRAC 2 cut(s) 189, 999
Mox20I TGGCCA 1 cut(s) 482
MscI TGGCCA 1 cut(s) 482
MseI TTAA 4 cut(s) 95, 951, 1284, 1446
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 1366
MspI CCGG 5 cut(s) 283, 432, 465, 518, 823
MspR9I CCNGG 4 cut(s) 283, 284, 518, 1347
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 1 cut(s) 1347
MvnI CGCG 1 cut(s) 309
NciI CCSGG 3 cut(s) 283, 284, 518
NdeII GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
NlaIII CATG 5 cut(s) 325, 503, 830, 1009, 1220
NlaIV GGNNCC 6 cut(s) 67, 107, 116, 463, 522, 709
NmuCI GTSAC 6 cut(s) 575, 991, 1048, 1063, 1097, 1292
NspV TTCGAA 1 cut(s) 891
PagI TCATGA 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PctI GAATGC 1 cut(s) 692
PfeI GAWTC 6 cut(s) 20, 193, 212, 667, 899, 923
PflMI CCANNNNNTGG 2 cut(s) 1286, 1346
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 3 cut(s) 43, 238, 1224
PleI GAGTC 2 cut(s) 742, 1045
PpsI GAGTC 2 cut(s) 742, 1045
PshAI GACNNNNGTC 1 cut(s) 1055
PshBI ATTAAT 1 cut(s) 95
PsiI TTATAA 1 cut(s) 795
Psp1406I AACGTT 2 cut(s) 9, 138
Psp6I CCWGG 1 cut(s) 1345
PspFI CCCAGC 2 cut(s) 711, 884
PspGI CCWGG 1 cut(s) 1345
PspN4I GGNNCC 6 cut(s) 67, 107, 116, 463, 522, 709
PspPI GGNCC 1 cut(s) 1349
PsuI RGATCY 2 cut(s) 34, 937
RsaI GTAC 2 cut(s) 124, 873
RsaNI GTAC 2 cut(s) 123, 872
SalI GTCGAC 1 cut(s) 1143
SaqAI TTAA 4 cut(s) 95, 951, 1284, 1446
SatI GCNGC 3 cut(s) 42, 237, 1223
Sau3AI GATC 6 cut(s) 34, 502, 655, 937, 1336, 1388
Sau96I GGNCC 1 cut(s) 1349
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 2 cut(s) 742, 1045
ScrFI CCNGG 4 cut(s) 283, 284, 518, 1347
SduI GDGCHC 2 cut(s) 119, 772
SfaNI GCATC 2 cut(s) 772, 1257
SfuI TTCGAA 1 cut(s) 891
SinI GGWCC 1 cut(s) 1349
SmaI CCCGGG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
SpeI ACTAGT 1 cut(s) 125
SsiI CCGC 4 cut(s) 69, 307, 1223, 1366
SspI AATATT 2 cut(s) 400, 1183
SspMI CTAG 5 cut(s) 120, 126, 350, 689, 1212
StyD4I CCNGG 4 cut(s) 281, 282, 516, 1345
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 4 cut(s) 207, 473, 774, 1048
TaiI ACGT 7 cut(s) 12, 141, 169, 291, 316, 805, 871
TaqI TCGA 8 cut(s) 603, 846, 891, 968, 1059, 1109, 1144, 1335
TaqII GACCGA 1 cut(s) 1162
TatI WGTACW 2 cut(s) 122, 871
TauI GCSGC 1 cut(s) 1225
TfiI GAWTC 6 cut(s) 20, 193, 212, 667, 899, 923
Tru1I TTAA 4 cut(s) 95, 951, 1284, 1446
Tru9I TTAA 4 cut(s) 95, 951, 1284, 1446
TscAI CASTG 3 cut(s) 364, 706, 1053
TseFI GTSAC 6 cut(s) 575, 991, 1048, 1063, 1097, 1292
TseI GCWGC 2 cut(s) 41, 236
Tsp45I GTSAC 6 cut(s) 575, 991, 1048, 1063, 1097, 1292
TspDTI ATGAA 3 cut(s) 81, 994, 1193
TspGWI ACGGA 1 cut(s) 69
TspMI CCCGGG 1 cut(s) 282
TspRI CASTG 3 cut(s) 364, 706, 1053
Van91I CCANNNNNTGG 2 cut(s) 1286, 1346
VpaK11BI GGWCC 1 cut(s) 1349
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 3 cut(s) 73, 88, 1150
XmaI CCCGGG 1 cut(s) 282
XmiI GTMKAC 2 cut(s) 278, 1144
XspI CTAG 5 cut(s) 120, 126, 350, 689, 1212
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.