Rh6BG283900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016259
Physical Location & Seq
Forward (+)
50700642 .. 50705548
4907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG283900.1

Sequence Viewer

Length: 855 bp
ATGATTTCCCAACTCTTGCTTGGAAGTCGATTCGGTTTTGTCTATAAAAATAAGGCCACCAGCACCATATGTTGTCATCGATCTAAATCATCAAGCACAATGGGCAACGTTTCTTCAGATTCTAATTATTCAGATCCAGCAGCAACATTCAACGGATGGGAAGGAACCGCAAATTTGAATCATTCAAATTCATTAATAGAGTGGAACCGATGGTGCCCTAGTACTAGTTATGATAACGTTGTGGCCTCAGTAATTGAATGGGAACGTCTGCCAGAAGAACTGGTTGTGTTGATTCTGGATAAACTGTTGGAATCCATTGACTATGTTCGCTTCGCTGCTGTTTGCAAAGAATGGTATCGTCTGGCTAAAGAGAAGTATACCCGGGACGTAGAGCGCTGGTATCACCGCGCACGTCCTCCCATGCTCTTGCTTCCTCCTACCCCAACCCTAGAACGCAGTGTTCTGTTCAGCTTTTCTCAAGGAACAGCATACAAGAATATTCAGTTACAAGTTCCTATTCCTAGAGAGGCCGGTTTGACAGCCGATATCTTCTGTTGTGGCTCCGGCCACAGTTGGTTGGCCAAAGTGGGTGTATATCATGATCATCATCAACTCCCGGAGCCTGTATGGTATACAGAACTCGTCAACCCTTTTCGCCAAGCAACAACTTTTAGTGACCATCCCATCCCTCTCGTTCAACTGGAAAGTAATCATACATATTTCCCTGATGCTCCGAAGATCCATGGGTTTTGGGTGTTTGGGTCTACGGAGGTGCGCGAGGACAGGCAGGCTGGGGAGTGCTGGTCCTGGGGATCTGACGCTGGTGATGGAGCGGCAGGAGTGGTGGGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

284

Amino Acids

32.12

Weight (kDa)

6.06

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 87 - 124 2.5e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 833
AccI GTMKAC 3 cut(s) 377, 632, 764
AccII CGCG 2 cut(s) 408, 777
AciI CCGC 3 cut(s) 168, 406, 833
AclI AACGTT 2 cut(s) 108, 237
AclWI GGATC 3 cut(s) 128, 733, 820
AcoI YGGCCR 2 cut(s) 565, 579
AcsI RAATTY 2 cut(s) 172, 187
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 223
AfeI AGCGCT 1 cut(s) 395
AgsI TTSAA 5 cut(s) 151, 178, 186, 257, 698
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 413
AjnI CCWGG 1 cut(s) 806
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
AlwI GGATC 3 cut(s) 128, 733, 820
Ama87I CYCGRG 1 cut(s) 381
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 5 cut(s) 54, 243, 528, 565, 579
ApeKI GCWGC 2 cut(s) 140, 335
ApoI RAATTY 2 cut(s) 172, 187
AseI ATTAAT 1 cut(s) 194
AspLEI GCGC 3 cut(s) 396, 410, 777
AspS9I GGNCC 1 cut(s) 804
AsuC2I CCSGG 3 cut(s) 382, 383, 617
AsuHPI GGTGA 2 cut(s) 395, 836
AvaI CYCGRG 1 cut(s) 381
AvaII GGWCC 1 cut(s) 804
BaeGI GKGCMC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 581
BanI GGYRCC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 152, 322
BccI CCATC 5 cut(s) 150, 204, 687, 692, 821
BciT130I CCWGG 1 cut(s) 808
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 3 cut(s) 382, 383, 617
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 4 cut(s) 219, 225, 449, 522
BfoI RGCGCY 1 cut(s) 397
BisI GCNGC 3 cut(s) 141, 336, 834
BlsI GCNGC 3 cut(s) 142, 337, 835
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 4 cut(s) 382, 383, 617, 808
Bme18I GGWCC 1 cut(s) 804
BmeT110I CYCGRG 1 cut(s) 381
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 804
BmiI GGNNCC 5 cut(s) 166, 206, 215, 562, 621
BmrFI CCNGG 4 cut(s) 382, 383, 617, 808
BmsI GCATC 1 cut(s) 718
BpuEI CTTGAG 1 cut(s) 462
BpuMI CCSGG 3 cut(s) 382, 383, 617
Bsa29I ATCGAT 1 cut(s) 79
BsaBI GATNNNNATC 2 cut(s) 85, 606
BsaJI CCNNGG 3 cut(s) 381, 742, 807
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 2 cut(s) 285, 705
Bse8I GATNNNNATC 2 cut(s) 85, 606
BseBI CCWGG 1 cut(s) 808
BseCI ATCGAT 1 cut(s) 79
BseDI CCNNGG 3 cut(s) 381, 742, 807
BseGI GGATG 3 cut(s) 161, 679, 684
BseJI GATNNNNATC 2 cut(s) 85, 606
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 285, 705
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 2 cut(s) 152, 322
BseYI CCCAGC 1 cut(s) 791
Bsh1236I CGCG 2 cut(s) 408, 777
BshFI GGCC 5 cut(s) 56, 245, 530, 567, 581
BshNI GGYRCC 1 cut(s) 213
BshVI ATCGAT 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 4 cut(s) 382, 531, 564, 617
BslFI GGGAC 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 5 cut(s) 56, 245, 530, 567, 581
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 5 cut(s) 80, 133, 601, 738, 812
Bsp19I CCATGG 1 cut(s) 742
BspACI CCGC 3 cut(s) 168, 406, 833
BspANI GGCC 5 cut(s) 56, 245, 530, 567, 581
BspCNI CTCAG 1 cut(s) 260
BspDI ATCGAT 1 cut(s) 79
BspFNI CGCG 2 cut(s) 408, 777
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 5 cut(s) 166, 206, 215, 562, 621
BspPI GGATC 3 cut(s) 128, 733, 820
BspT107I GGYRCC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 833
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 2 cut(s) 285, 705
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 3 cut(s) 381, 742, 807
BssMI GATC 5 cut(s) 80, 133, 601, 738, 812
BssNAI GTATAC 2 cut(s) 378, 633
BssT1I CCWWGG 1 cut(s) 742
Bst1107I GTATAC 2 cut(s) 378, 633
Bst2UI CCWGG 1 cut(s) 808
Bst4CI ACNGT 2 cut(s) 306, 572
BstC8I GCNNGC 1 cut(s) 789
BstDEI CTNAG 1 cut(s) 247
BstDSI CCRYGG 1 cut(s) 742
BstF5I GGATG 3 cut(s) 161, 679, 684
BstFNI CGCG 2 cut(s) 408, 777
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 3 cut(s) 396, 410, 777
BstKTI GATC 5 cut(s) 83, 136, 604, 741, 815
BstMBI GATC 5 cut(s) 80, 133, 601, 738, 812
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 808
BstSCI CCNGG 4 cut(s) 380, 381, 615, 806
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 2 cut(s) 408, 777
BstV1I GCAGC 2 cut(s) 152, 322
BstX2I RGATCY 3 cut(s) 133, 738, 812
BstYI RGATCY 3 cut(s) 133, 738, 812
BstZ17I GTATAC 2 cut(s) 378, 633
Bsu15I ATCGAT 1 cut(s) 79
BsuRI GGCC 5 cut(s) 56, 245, 530, 567, 581
BsuTUI ATCGAT 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 742
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 161, 679, 684
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 789
CciI TCATGA 1 cut(s) 598
CfoI GCGC 3 cut(s) 396, 410, 777
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 804
Cfr9I CCCGGG 1 cut(s) 381
ClaI ATCGAT 1 cut(s) 79
CseI GACGC 1 cut(s) 827
Csp6I GTAC 1 cut(s) 222
CviAII CATG 3 cut(s) 421, 599, 743
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 247
DpnI GATC 5 cut(s) 82, 135, 603, 740, 814
DpnII GATC 5 cut(s) 80, 133, 601, 738, 812
EaeI YGGCCR 2 cut(s) 565, 579
Eco130I CCWWGG 1 cut(s) 742
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 804
Eco47III AGCGCT 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 806
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 742
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 3 cut(s) 424, 602, 746
FaqI GGGAC 1 cut(s) 398
FatI CATG 3 cut(s) 420, 598, 742
FauNDI CATATG 1 cut(s) 68
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 3 cut(s) 377, 632, 764
Fnu4HI GCNGC 3 cut(s) 141, 336, 834
FokI GGATG 3 cut(s) 168, 666, 671
Fsp4HI GCNGC 3 cut(s) 141, 336, 834
FspBI CTAG 4 cut(s) 219, 225, 449, 522
GlaI GCGC 3 cut(s) 395, 409, 776
GluI GCNGC 3 cut(s) 141, 336, 834
GsaI CCCAGC 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 5 cut(s) 56, 245, 530, 567, 581
HapII CCGG 4 cut(s) 382, 531, 564, 617
HgaI GACGC 1 cut(s) 827
HhaI GCGC 3 cut(s) 396, 410, 777
Hin1II CATG 3 cut(s) 424, 602, 746
Hin6I GCGC 3 cut(s) 394, 408, 775
HinP1I GCGC 3 cut(s) 394, 408, 775
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 5 cut(s) 30, 119, 178, 292, 311
HpaII CCGG 4 cut(s) 382, 531, 564, 617
HphI GGTGA 2 cut(s) 395, 836
Hpy166II GTNNAC 4 cut(s) 378, 633, 646, 765
Hpy188I TCNGA 4 cut(s) 118, 133, 735, 817
Hpy188III TCNNGA 2 cut(s) 296, 599
Hpy8I GTNNAC 4 cut(s) 378, 633, 646, 765
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 306, 572
HpyCH4IV ACGT 5 cut(s) 108, 237, 265, 387, 412
HpyCH4V TGCA 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 5 cut(s) 108, 237, 265, 387, 412
Hsp92II CATG 3 cut(s) 424, 602, 746
HspAI GCGC 3 cut(s) 394, 408, 775
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 5 cut(s) 80, 133, 601, 738, 812
LmnI GCTCC 4 cut(s) 566, 619, 736, 830
Lsp1109I GCAGC 2 cut(s) 152, 322
LweI GCATC 1 cut(s) 718
MaeI CTAG 4 cut(s) 219, 225, 449, 522
MaeII ACGT 5 cut(s) 108, 237, 265, 387, 412
MaeIII GTNAC 2 cut(s) 504, 674
MalI GATC 5 cut(s) 82, 135, 603, 740, 814
MbiI CCGCTC 1 cut(s) 833
MboI GATC 5 cut(s) 80, 133, 601, 738, 812
MboII GAAGA 4 cut(s) 105, 287, 541, 748
MflI RGATCY 3 cut(s) 133, 738, 812
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 4 cut(s) 124, 172, 187, 252
MluNI TGGCCA 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 7 cut(s) 256, 426, 444, 520, 699, 763, 772
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 581
MspI CCGG 4 cut(s) 382, 531, 564, 617
MspR9I CCNGG 4 cut(s) 382, 383, 617, 808
MvaI CCWGG 1 cut(s) 808
MvnI CGCG 2 cut(s) 408, 777
MwoI GCNNNNNNNGC 1 cut(s) 102
NciI CCSGG 3 cut(s) 382, 383, 617
NcoI CCATGG 1 cut(s) 742
NdeI CATATG 1 cut(s) 68
NdeII GATC 5 cut(s) 80, 133, 601, 738, 812
NlaIII CATG 3 cut(s) 424, 602, 746
NlaIV GGNNCC 5 cut(s) 166, 206, 215, 562, 621
NmuCI GTSAC 1 cut(s) 674
PagI TCATGA 1 cut(s) 598
PfeI GAWTC 5 cut(s) 30, 119, 178, 292, 311
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 3 cut(s) 142, 337, 835
PshBI ATTAAT 1 cut(s) 194
Psp1406I AACGTT 2 cut(s) 108, 237
Psp6I CCWGG 1 cut(s) 806
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 1 cut(s) 806
PspN4I GGNNCC 5 cut(s) 166, 206, 215, 562, 621
PspPI GGNCC 1 cut(s) 804
PsuI RGATCY 3 cut(s) 133, 738, 812
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 141, 336, 834
Sau3AI GATC 5 cut(s) 80, 133, 601, 738, 812
Sau96I GGNCC 1 cut(s) 804
ScaI AGTACT 1 cut(s) 223
ScrFI CCNGG 4 cut(s) 382, 383, 617, 808
SduI GDGCHC 1 cut(s) 218
SetI ASST 7 cut(s) 111, 240, 268, 390, 415, 473, 774
SfaNI GCATC 1 cut(s) 718
SinI GGWCC 1 cut(s) 804
SmaI CCCGGG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 4 cut(s) 124, 172, 187, 252
SsiI CCGC 3 cut(s) 168, 406, 833
SspI AATATT 1 cut(s) 499
SspMI CTAG 4 cut(s) 219, 225, 449, 522
StyD4I CCNGG 4 cut(s) 380, 381, 615, 806
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 2 cut(s) 306, 572
TaiI ACGT 5 cut(s) 111, 240, 268, 390, 415
TaqI TCGA 2 cut(s) 28, 79
TasI AATT 4 cut(s) 124, 172, 187, 252
TatI WGTACW 1 cut(s) 221
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 5 cut(s) 30, 119, 178, 292, 311
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 2 cut(s) 140, 335
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 2 cut(s) 168, 782
TspMI CCCGGG 1 cut(s) 381
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 804
VspI ATTAAT 1 cut(s) 194
XapI RAATTY 2 cut(s) 172, 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmaI CCCGGG 1 cut(s) 381
XmiI GTMKAC 3 cut(s) 377, 632, 764
XspI CTAG 4 cut(s) 219, 225, 449, 522
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.