Rmu_sc0002535.1_g000008

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002535.1
Physical Location & Seq
Forward (+)
41171 .. 42652
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002535.1_g000008.1.cds

Sequence Viewer

Length: 1482 bp
atgggcaacgtttcttcagattccaataattcagatccagtagcaacattcaacggatgggagagaactgcaaatttgaatcatttagattcagtagcagcattgaaccaatggtgccctagtactagttatgataacgttttggcctcagtaattgaatgggaacgtctgccagaagaactgattgggttgattctggataaactattggaatccattgactatgttcgcttcgctgctgtctgcaaacaatggtatcgtctggctaaagacaagtatactcgggacacacagcgctggtatcatcgcgcacgtcctcccatgctcttgctttctcctctcccaggtatccaaaccctagaaagaagaacactgtgcagcgtttctcaaggaacaacctacagcaatattcagttacaagttcctctaattcctagagaggccggttcgacaaccgatatgttctgttgtggctccggccacggttggttggccaaagttggtgtatatcatgatggttatcaactctctgaatctgaatggcgtatagaactcttcaacccttttcgacaagcaacaactcttagtagccatcccgtccctcccgttaaactcgaacgtgatcactttaagaggctccctaaagctccgaaggttatattgtcctctgatccagccttgaatccggatgatttttcggttctagcattcctcactaaaggtccccagcttgctttccataagagaggacaaaatggctggactcttataaaaagaagagaagcatggtttactgatgctatattttacaaaggacgtttctatgcaattgataaccggcatggatgtattctatcattcgatgttgaagaagccaagtggcatgaacttagaattggtgggtatgaaagtgattcaggtcgcgcgtatttggtagaatcaaccaagggagacctattgtgtcttaaaagaattttgaaatcagattatccatataagagacgggtgacgaaaagcttcaagctttacaagttggagttggacaaccaatcatccacagtgactcaggtcgaggtcacaaacattgaagacgaggctttgtttgtaggtgacactccttcggtatctgtcttggcttcaaaattttgtggatgtcgaccgaattcaatttactataccgatgatttgatgaatattcctctacatcattacaataaattgcctatatttaagccgcaaggaataatatatgatatgggcatctttaatatagcagataaaactatttcgccatataatgtaaggcgcttctcacctgcagtttggattacgacaccaccaccgtttgatccattacctggattaaactcaacagagtggaccagagtaaggagtaaaggatcaaacacattagagttgacaacagtaagcaaggaagacaagaagaaaaggaggcttaaacactggcttagttgtttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

56.43

Weight (kDa)

8.89

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AarI CACCTGC 1 cut(s) 1324
Acc36I ACCTGC 1 cut(s) 1324
AccB1I GGYRCC 1 cut(s) 114
AccB7I CCANNNNNTGG 1 cut(s) 1358
AccI GTMKAC 2 cut(s) 278, 1156
AccII CGCG 3 cut(s) 309, 924, 926
AccIII TCCGGA 1 cut(s) 685
AciI CCGC 1 cut(s) 1235
AclI AACGTT 2 cut(s) 9, 138
AclWI GGATC 4 cut(s) 29, 665, 1343, 1408
AcoI YGGCCR 2 cut(s) 478, 492
AcsI RAATTY 4 cut(s) 73, 972, 1142, 1162
AfaI GTAC 1 cut(s) 124
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 344, 1358, 1389
AhlI ACTAGT 1 cut(s) 125
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 2 cut(s) 343, 1357
AjuI GAANNNNNNNTTGG 4 cut(s) 168, 200, 879, 911
AluBI AGCT 4 cut(s) 647, 730, 1017, 1024
AluI AGCT 4 cut(s) 647, 730, 1017, 1024
Alw26I GTCTC 2 cut(s) 945, 994
AlwI GGATC 4 cut(s) 29, 665, 1343, 1408
Ama87I CYCGRG 1 cut(s) 282
Aor13HI TCCGGA 1 cut(s) 685
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 4 cut(s) 144, 441, 478, 492
ApeKI GCWGC 3 cut(s) 98, 236, 378
ApoI RAATTY 4 cut(s) 73, 972, 1142, 1162
Asp700I GAANNNNTTC 1 cut(s) 1016
AspLEI GCGC 4 cut(s) 297, 311, 926, 1308
AspS9I GGNCC 2 cut(s) 722, 1380
AsuHPI GGTGA 3 cut(s) 1018, 1121, 1305
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 2 cut(s) 722, 1380
BaeGI GKGCMC 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 239, 272
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 114
BbsI GAAGAC 2 cut(s) 1095, 1443
BbvI GCAGC 3 cut(s) 110, 223, 390
BccI CCATC 3 cut(s) 51, 509, 600
BciT130I CCWGG 2 cut(s) 345, 1359
BciVI GTATCC 1 cut(s) 359
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 945, 994
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 5 cut(s) 120, 126, 359, 435, 704
BfmI CTRYAG 2 cut(s) 400, 1317
BfoI RGCGCY 2 cut(s) 298, 1309
BfuAI ACCTGC 1 cut(s) 1324
BfuI GTATCC 1 cut(s) 359
BisI GCNGC 4 cut(s) 99, 237, 379, 1235
BlsI GCNGC 4 cut(s) 100, 238, 380, 1236
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 345, 1359
Bme18I GGWCC 2 cut(s) 722, 1380
BmeT110I CYCGRG 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 722, 1380
BmiI GGNNCC 4 cut(s) 116, 475, 638, 724
BmrFI CCNGG 2 cut(s) 345, 1359
BmsI GCATC 2 cut(s) 787, 1269
BoxI GACNNNNGTC 1 cut(s) 1067
BpiI GAAGAC 2 cut(s) 1095, 1443
BpuEI CTTGAG 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 3 cut(s) 343, 481, 945
BsaWI WCCGGW 1 cut(s) 685
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 1358, 1389
Bse118I RCCGGY 2 cut(s) 443, 837
Bse1I ACTGG 2 cut(s) 38, 1469
Bse8I GATNNNNATC 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 685
BseBI CCWGG 2 cut(s) 345, 1359
BseDI CCNNGG 3 cut(s) 343, 481, 945
BseGI GGATG 6 cut(s) 62, 592, 694, 851, 1052, 1157
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 3 cut(s) 344, 1358, 1389
BseMII CTCAG 2 cut(s) 162, 1079
BseNI ACTGG 2 cut(s) 38, 1469
BseRI GAGGAG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 3 cut(s) 110, 223, 390
BseYI CCCAGC 1 cut(s) 726
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 3 cut(s) 309, 924, 926
Bsh1285I CGRYCG 1 cut(s) 1160
BshFI GGCC 4 cut(s) 146, 443, 480, 494
BshNI GGYRCC 1 cut(s) 114
BsiEI CGRYCG 1 cut(s) 1160
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 4 cut(s) 444, 477, 686, 838
BslFI GGGAC 3 cut(s) 299, 584, 708
BslI CCNNNNNNNGG 3 cut(s) 344, 1358, 1389
BsmAI GTCTC 2 cut(s) 945, 994
BsmBI CGTCTC 1 cut(s) 994
BsmFI GGGAC 3 cut(s) 299, 584, 708
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 4 cut(s) 146, 443, 480, 494
Bso31I GGTCTC 1 cut(s) 945
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 685
Bsp143I GATC 5 cut(s) 34, 622, 670, 1348, 1400
BspACI CCGC 1 cut(s) 1235
BspANI GGCC 4 cut(s) 146, 443, 480, 494
BspCNI CTCAG 2 cut(s) 161, 1078
BspEI TCCGGA 1 cut(s) 685
BspFNI CGCG 3 cut(s) 309, 924, 926
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 4 cut(s) 116, 475, 638, 724
BspMAI CTGCAG 1 cut(s) 1321
BspMI ACCTGC 1 cut(s) 1324
BspPI GGATC 4 cut(s) 29, 665, 1343, 1408
BspT107I GGYRCC 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 945
BsrFI RCCGGY 2 cut(s) 443, 837
BsrI ACTGG 2 cut(s) 38, 1469
BssAI RCCGGY 2 cut(s) 443, 837
BssECI CCNNGG 3 cut(s) 343, 481, 945
BssMI GATC 5 cut(s) 34, 622, 670, 1348, 1400
BssNAI GTATAC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 945
Bst1107I GTATAC 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 345, 1359
Bst4CI ACNGT 5 cut(s) 375, 485, 1060, 1344, 1426
Bst6I CTCTTC 2 cut(s) 560, 772
BstC8I GCNNGC 1 cut(s) 732
BstDEI CTNAG 5 cut(s) 148, 584, 890, 1065, 1469
BstDSI CCRYGG 1 cut(s) 481
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 6 cut(s) 62, 592, 694, 851, 1052, 1157
BstFNI CGCG 3 cut(s) 309, 924, 926
BstH2I RGCGCY 2 cut(s) 298, 1309
BstHHI GCGC 4 cut(s) 297, 311, 926, 1308
BstKTI GATC 5 cut(s) 37, 625, 673, 1351, 1403
BstMAI GTCTC 2 cut(s) 945, 994
BstMBI GATC 5 cut(s) 34, 622, 670, 1348, 1400
BstMCI CGRYCG 1 cut(s) 1160
BstNI CCWGG 2 cut(s) 345, 1359
BstPAI GACNNNNGTC 1 cut(s) 1067
BstSCI CCNGG 2 cut(s) 343, 1357
BstSFI CTRYAG 2 cut(s) 400, 1317
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 3 cut(s) 309, 924, 926
BstV1I GCAGC 3 cut(s) 110, 223, 390
BstV2I GAAGAC 2 cut(s) 1095, 1443
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 279
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 4 cut(s) 146, 443, 480, 494
BtgI CCRYGG 1 cut(s) 481
BtgZI GCGATG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 6 cut(s) 62, 592, 694, 851, 1052, 1157
BtsIMutI CAGTG 3 cut(s) 371, 1065, 1462
BveI ACCTGC 1 cut(s) 1324
Cac8I GCNNGC 1 cut(s) 732
CciI TCATGA 1 cut(s) 511
CfoI GCGC 4 cut(s) 297, 311, 926, 1308
Cfr10I RCCGGY 2 cut(s) 443, 837
Cfr13I GGNCC 2 cut(s) 722, 1380
Csp6I GTAC 1 cut(s) 123
CviAII CATG 5 cut(s) 322, 512, 786, 842, 884
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 5 cut(s) 148, 584, 890, 1065, 1469
DpnI GATC 5 cut(s) 36, 624, 672, 1350, 1402
DpnII GATC 5 cut(s) 34, 622, 670, 1348, 1400
EaeI YGGCCR 2 cut(s) 478, 492
Eam1104I CTCTTC 2 cut(s) 560, 772
EarI CTCTTC 2 cut(s) 560, 772
Eco130I CCWWGG 1 cut(s) 945
Eco31I GGTCTC 1 cut(s) 945
Eco47I GGWCC 2 cut(s) 722, 1380
Eco47III AGCGCT 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 282
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 722
EcoRI GAATTC 1 cut(s) 1162
EcoRII CCWGG 2 cut(s) 343, 1357
EcoT14I CCWWGG 1 cut(s) 945
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 994
FaeI CATG 5 cut(s) 325, 515, 789, 845, 887
FaqI GGGAC 3 cut(s) 299, 584, 708
FatI CATG 5 cut(s) 321, 511, 785, 841, 883
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 2 cut(s) 278, 1156
Fnu4HI GCNGC 4 cut(s) 99, 237, 379, 1235
FokI GGATG 6 cut(s) 69, 579, 701, 858, 1039, 1164
Fsp4HI GCNGC 4 cut(s) 99, 237, 379, 1235
FspBI CTAG 5 cut(s) 120, 126, 359, 435, 704
GlaI GCGC 4 cut(s) 296, 310, 925, 1307
GluI GCNGC 4 cut(s) 99, 237, 379, 1235
GsaI CCCAGC 1 cut(s) 730
HaeII RGCGCY 2 cut(s) 298, 1309
HaeIII GGCC 4 cut(s) 146, 443, 480, 494
HapII CCGG 4 cut(s) 444, 477, 686, 838
HhaI GCGC 4 cut(s) 297, 311, 926, 1308
Hin1II CATG 5 cut(s) 325, 515, 789, 845, 887
Hin6I GCGC 4 cut(s) 295, 309, 924, 1306
HinP1I GCGC 4 cut(s) 295, 309, 924, 1306
HincII GTYRAC 2 cut(s) 1157, 1419
HindII GTYRAC 2 cut(s) 1157, 1419
HindIII AAGCTT 2 cut(s) 1015, 1022
HpaII CCGG 4 cut(s) 444, 477, 686, 838
HphI GGTGA 3 cut(s) 1018, 1121, 1305
Hpy166II GTNNAC 5 cut(s) 279, 792, 1157, 1380, 1419
Hpy188I TCNGA 8 cut(s) 19, 34, 532, 538, 651, 670, 985, 1481
Hpy188III TCNNGA 4 cut(s) 197, 284, 512, 686
Hpy8I GTNNAC 5 cut(s) 279, 792, 1157, 1380, 1419
HpyAV CCTTC 2 cut(s) 646, 1128
HpyCH4III ACNGT 5 cut(s) 375, 485, 1060, 1344, 1426
HpyCH4IV ACGT 6 cut(s) 9, 138, 166, 313, 619, 817
HpyCH4V TGCA 5 cut(s) 71, 246, 378, 827, 1319
HpyF3I CTNAG 5 cut(s) 148, 584, 890, 1065, 1469
HpySE526I ACGT 6 cut(s) 9, 138, 166, 313, 619, 817
Hsp92II CATG 5 cut(s) 325, 515, 789, 845, 887
HspAI GCGC 4 cut(s) 295, 309, 924, 1306
Kpn2I TCCGGA 1 cut(s) 685
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 34, 622, 670, 1348, 1400
LmnI GCTCC 3 cut(s) 479, 642, 652
Lsp1109I GCAGC 3 cut(s) 110, 223, 390
LweI GCATC 2 cut(s) 787, 1269
MaeI CTAG 5 cut(s) 120, 126, 359, 435, 704
MaeII ACGT 6 cut(s) 9, 138, 166, 313, 619, 817
MaeIII GTNAC 5 cut(s) 414, 1006, 1060, 1075, 1109
MalI GATC 5 cut(s) 36, 624, 672, 1350, 1402
MboI GATC 5 cut(s) 34, 622, 670, 1348, 1400
MboII GAAGA 9 cut(s) 6, 188, 378, 547, 789, 881, 1100, 1448, 1456
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 494
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 2 cut(s) 757, 1057
MmeI TCCRAC 2 cut(s) 1014, 1020
Mox20I TGGCCA 1 cut(s) 494
MroI TCCGGA 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 1016
MscI TGGCCA 1 cut(s) 494
MseI TTAA 7 cut(s) 609, 630, 966, 1230, 1266, 1364, 1458
Msp20I TGGCCA 1 cut(s) 494
MspI CCGG 4 cut(s) 444, 477, 686, 838
MspR9I CCNGG 2 cut(s) 345, 1359
MunI CAATTG 1 cut(s) 828
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 2 cut(s) 345, 1359
MvnI CGCG 3 cut(s) 309, 924, 926
NdeII GATC 5 cut(s) 34, 622, 670, 1348, 1400
NlaIII CATG 5 cut(s) 325, 515, 789, 845, 887
NlaIV GGNNCC 4 cut(s) 116, 475, 638, 724
NmuCI GTSAC 4 cut(s) 1006, 1060, 1075, 1109
PagI TCATGA 1 cut(s) 511
PaqCI CACCTGC 1 cut(s) 1324
PctI GAATGC 1 cut(s) 707
PdmI GAANNNNTTC 1 cut(s) 1016
PfeI GAWTC 9 cut(s) 20, 79, 89, 193, 212, 533, 682, 914, 938
PflMI CCANNNNNTGG 1 cut(s) 1358
PkrI GCNGC 4 cut(s) 100, 238, 380, 1236
PleI GAGTC 2 cut(s) 757, 1057
PpsI GAGTC 2 cut(s) 757, 1057
PpuMI RGGWCCY 1 cut(s) 722
PshAI GACNNNNGTC 1 cut(s) 1067
PsiI TTATAA 1 cut(s) 770
Psp1406I AACGTT 2 cut(s) 9, 138
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 343, 1357
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 2 cut(s) 343, 1357
PspN4I GGNNCC 4 cut(s) 116, 475, 638, 724
PspPI GGNCC 2 cut(s) 722, 1380
PspPPI RGGWCCY 1 cut(s) 722
PstI CTGCAG 1 cut(s) 1321
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SalI GTCGAC 1 cut(s) 1155
SaqAI TTAA 7 cut(s) 609, 630, 966, 1230, 1266, 1364, 1458
SatI GCNGC 4 cut(s) 99, 237, 379, 1235
Sau3AI GATC 5 cut(s) 34, 622, 670, 1348, 1400
Sau96I GGNCC 2 cut(s) 722, 1380
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 2 cut(s) 757, 1057
ScrFI CCNGG 2 cut(s) 345, 1359
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 2 cut(s) 787, 1269
SfcI CTRYAG 2 cut(s) 400, 1317
SinI GGWCC 2 cut(s) 722, 1380
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
SpeI ACTAGT 1 cut(s) 125
SsiI CCGC 1 cut(s) 1235
SspI AATATT 2 cut(s) 409, 1195
SspMI CTAG 5 cut(s) 120, 126, 359, 435, 704
StyD4I CCNGG 2 cut(s) 343, 1357
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 5 cut(s) 375, 485, 1060, 1344, 1426
TaiI ACGT 6 cut(s) 12, 141, 169, 316, 622, 820
TaqI TCGA 6 cut(s) 449, 568, 615, 861, 1071, 1156
TaqII GACCGA 1 cut(s) 1174
TatI WGTACW 1 cut(s) 122
TauI GCSGC 1 cut(s) 1237
TfiI GAWTC 9 cut(s) 20, 79, 89, 193, 212, 533, 682, 914, 938
Tru1I TTAA 7 cut(s) 609, 630, 966, 1230, 1266, 1364, 1458
Tru9I TTAA 7 cut(s) 609, 630, 966, 1230, 1266, 1364, 1458
TscAI CASTG 3 cut(s) 378, 1065, 1469
TseFI GTSAC 4 cut(s) 1006, 1060, 1075, 1109
TseI GCWGC 3 cut(s) 98, 236, 378
Tsp45I GTSAC 4 cut(s) 1006, 1060, 1075, 1109
TspDTI ATGAA 3 cut(s) 900, 921, 1205
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 3 cut(s) 378, 1065, 1469
Van91I CCANNNNNTGG 1 cut(s) 1358
VpaK11BI GGWCC 2 cut(s) 722, 1380
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 4 cut(s) 73, 972, 1142, 1162
XmiI GTMKAC 2 cut(s) 278, 1156
XmnI GAANNNNTTC 1 cut(s) 1016
XspI CTAG 5 cut(s) 120, 126, 359, 435, 704
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.