RchiOBHm_Chr5g0035781

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
29770270 .. 29770671
402 bp
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UTR
Exon/CDS
Intron
PRQ31462

Sequence Viewer

Length: 234 bp
ATGGCTAGGAACCTAGGATTTCTGTTACCTCAAGTTAAGTTGATGATTACTCAGTTTATTAGCATCTTCTGCTACTCAGTTTATTACTCAATTACTCAGTTTTTCCATGACCAAGTTTCTTTACTGCAAATGCAGGCAATGACACCGAGGACCATCGTAATTACTTATCTTCGATACACTATGCATTGTGACATTGATTTGCTGCAACTAGTTGTACTGGGTGGTCAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

9.0

Weight (kDa)

7.82

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 216
AhlI ACTAGT 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 202
AspA2I CCTAGG 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
AvrII CCTAGG 1 cut(s) 13
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 161
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 3 cut(s) 6, 14, 209
BisI GCNGC 1 cut(s) 203
BlnI CCTAGG 1 cut(s) 13
BlsI GCNGC 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 13, 146
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 13, 146
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 65, 90, 110
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 189
BspCNI CTCAG 3 cut(s) 64, 89, 109
BspLI GGNNCC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 13, 146
BssT1I CCWWGG 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 51, 76, 96
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 215
CviAII CATG 1 cut(s) 107
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 3 cut(s) 51, 76, 96
Eco130I CCWWGG 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 108, 182
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 3 cut(s) 6, 14, 209
GluI GCNGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 127, 133, 184, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 3 cut(s) 51, 76, 96
Hsp92II CATG 1 cut(s) 110
LpnPI CCDG 2 cut(s) 119, 203
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 72
MaeI CTAG 3 cut(s) 6, 14, 209
MaeIII GTNAC 2 cut(s) 24, 188
MboII GAAGA 2 cut(s) 58, 161
MluCI AATT 2 cut(s) 90, 159
MnlI CCTC 2 cut(s) 39, 141
Mph1103I ATGCAT 1 cut(s) 186
MseI TTAA 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 69
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 186
PkrI GCNGC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 203
Sau96I GGNCC 1 cut(s) 150
SetI ASST 2 cut(s) 15, 31
SfaNI GCATC 1 cut(s) 72
SgeI CNNG 9 cut(s) 18, 26, 44, 119, 125, 146, 159, 221, 230
SinI GGWCC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 2 cut(s) 90, 159
SspMI CTAG 3 cut(s) 6, 14, 209
StyI CCWWGG 1 cut(s) 13
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 90, 159
TatI WGTACW 1 cut(s) 214
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 150
XmaJI CCTAGG 1 cut(s) 13
XspI CTAG 3 cut(s) 6, 14, 209
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.