Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017987

Physical Location & Seq

Genomic Coordinates Reverse (-)

16523512 .. 16524886

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGCAGTTGGAAGTCCAAATTGTTAATTCCCTTCGGAATGGTGAATCAGAAGAGGAATGTGCTCTTGTCCAGGCCGGGTATTTAATTAAAGAAAAGCGGGATGATGAGGCATATGACATAATAAGGGGCTATTGTCAAACCATACGAGAAAAATTTTATAAAATTGAAAGGCAAAGGATATGTCCCGTTGAACTTAGACGGGAATTTGAAGCTTTGTGCTTTGCTGCCACAAGATGTTCGGATATACCAGAGCTTAAACGTTTGAAGAAAACTTTTGAGAAATATTTTGGAAGAGAATTTGTGACTTCAAGTAAGAAACTTGAATCGCTCCGTGAAGAGATATTGTTGGAGAAGCTATCCCTAGAACCTCCCAGCCTTGAAGACAAGTTGGAAAAATTAAGTGCAATAGCAAGTACTAACAACATTACCTGGAGATACTCTAGAAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1 RabGAP-TBC

Protein Analysis

152

Amino Acids

17.89

Weight (kDa)

6.46

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	3 - 143	1e-24	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19470
rosa_laevigata	RLG00000012664
rosa_multiflora	Rmu_sc0002535.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183450 Rroxscaffold_7G00183460 Rroxscaffold_7G00183570
rosa_samantha	Rh6BG283800 Rh6BG284300 Rh6BG284400
rosa_wichuraiana	Rw0G000380 Rw6G024340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AciI	CCGC	1 cut(s)	100
AclI	AACGTT	1 cut(s)	262
AcsI	RAATTY	3 cut(s)	155, 206, 299
AfaI	GTAC	1 cut(s)	418
AgsI	TTSAA	7 cut(s)	170, 194, 212, 268, 312, 326, 383
AjnI	CCWGG	2 cut(s)	72, 431
AluBI	AGCT	3 cut(s)	215, 256, 358
AluI	AGCT	3 cut(s)	215, 256, 358
Alw21I	GWGCWC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	3 cut(s)	155, 206, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	74, 433
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	2 cut(s)	365, 444
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	3 cut(s)	74, 79, 433
BmrFI	CCNGG	3 cut(s)	74, 79, 433
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	74, 433
BseGI	GGATG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	74, 433
Bst6I	CTCTTC	3 cut(s)	48, 289, 333
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	109
BstNI	CCWGG	2 cut(s)	74, 433
BstSCI	CCNGG	3 cut(s)	72, 77, 431
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	417
CviJI	RGCY	6 cut(s)	77, 132, 215, 256, 358, 378
CviKI_1	RGCY	6 cut(s)	77, 132, 215, 256, 358, 378
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	1 cut(s)	197
Eam1104I	CTCTTC	3 cut(s)	48, 289, 333
EarI	CTCTTC	3 cut(s)	48, 289, 333
EcoRII	CCWGG	2 cut(s)	72, 431
FaiI	YATR	7 cut(s)	115, 117, 122, 146, 162, 184, 248
FaqI	GGGAC	1 cut(s)	171
FauI	CCCGC	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	365, 444
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	47, 326
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	3 cut(s)	39, 52, 244
Hpy188III	TCNNGA	1 cut(s)	444
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	262
LmnI	GCTCC	2 cut(s)	4, 336
LpnPI	CCDG	7 cut(s)	59, 86, 91, 264, 388, 418, 445
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	365, 444
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	304
MboII	GAAGA	5 cut(s)	65, 280, 306, 350, 395
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	8 cut(s)	21, 28, 87, 155, 165, 206, 299, 398
MmeI	TCCRAC	2 cut(s)	330, 372
MnlI	CCTC	3 cut(s)	49, 103, 381
MseI	TTAA	5 cut(s)	27, 86, 90, 258, 401
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	3 cut(s)	74, 79, 433
MvaI	CCWGG	2 cut(s)	74, 433
NciI	CCSGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	304
PacI	TTAATTAA	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	47, 326
PkrI	GCNGC	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	72, 431
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	72, 431
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	27, 86, 90, 258, 401
SatI	GCNGC	1 cut(s)	228
ScaI	AGTACT	1 cut(s)	418
ScrFI	CCNGG	3 cut(s)	74, 79, 433
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	217, 258, 265, 360, 373, 434
Sse9I	AATT	8 cut(s)	21, 28, 87, 155, 165, 206, 299, 398
SsiI	CCGC	1 cut(s)	100
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	2 cut(s)	365, 444
StyD4I	CCNGG	3 cut(s)	72, 77, 431
TaiI	ACGT	1 cut(s)	265
TasI	AATT	8 cut(s)	21, 28, 87, 155, 165, 206, 299, 398
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	47, 326
Tru1I	TTAA	5 cut(s)	27, 86, 90, 258, 401
Tru9I	TTAA	5 cut(s)	27, 86, 90, 258, 401
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	323
XapI	RAATTY	3 cut(s)	155, 206, 299
XbaI	TCTAGA	1 cut(s)	443
XspI	CTAG	2 cut(s)	365, 444
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.