Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017987

Physical Location & Seq

Genomic Coordinates Forward (+)

22530950 .. 22534147

Gene Structure 3198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAGAAGCCGCCGGTGAAGAAAACATGGAGGCGACTGAAGAAGTTTCTAGGTTTGTCACGAGGAGATTTCAACACATCTAAGTGGGAAACTGCATTGGAGAAGGTAGTGGCTCGAACAGAGGTTCTGAAGCAACCGAGAGAGGAATACATGGGGCAGTTGAGAAAAGAAATTGTCCGTTCCCTCCGGAAGGGCCAATCACAAGAGGAGTGTGCTCTTATGCGGGCTGGGTACTTGATCACAGAAAGGGGGGCTGCTGATGCAAATGAGATCATAAGGGCTTCTTGTGAGAGCATATCTAACAGGCTTTGTAGAATCCGATGGCAAAGGAAATGCCCCGAGGATCTTAGAACGGAGTTTCAAAACTTGAGCTTCGCTGCCTCAAAATGTTTGGATATTCCAGAGCTAAAGAGTCTCAAGAAAATTTTTGAGAAAGAATTTGGGAGAAACTTTGTGGCTGCAAGTAAGGATCTGCGAGGTGTACGTGAAGAGCTGTTTGAGATGCTGTCTACTAAAACTCCCACCCTTAAAGACAAGTTAAGGATATTGAATGAAATAGCAGAGGAGAACAATATTCATTGGAAGTACTCCAAAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1 RabGAP-TBC

Protein Analysis

200

Amino Acids

23.4

Weight (kDa)

9.59

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	31 - 192	3.1e-31	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19470
rosa_laevigata	RLG00000012664
rosa_multiflora	Rmu_sc0002535.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183450 Rroxscaffold_7G00183460 Rroxscaffold_7G00183570
rosa_samantha	Rh6BG283800 Rh6BG284300 Rh6BG284400
rosa_wichuraiana	Rw0G000380 Rw6G024340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	509
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	2 cut(s)	11, 223
AclWI	GGATC	2 cut(s)	351, 477
AcsI	RAATTY	2 cut(s)	423, 437
AcuI	CTGAAG	2 cut(s)	59, 149
AfaI	GTAC	3 cut(s)	233, 483, 587
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	73, 362, 550
AluBI	AGCT	3 cut(s)	372, 406, 493
AluI	AGCT	3 cut(s)	372, 406, 493
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	2 cut(s)	351, 477
Ama87I	CYCGRG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	254, 377, 458
ApoI	RAATTY	2 cut(s)	423, 437
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	338
BauI	CACGAG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	241, 364, 445
BccI	CCATC	1 cut(s)	315
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	11, 255, 378, 459
BlsI	GCNGC	4 cut(s)	12, 256, 379, 460
BmcAI	AGTACT	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	193
BmsI	GCATC	2 cut(s)	250, 492
BpuEI	CTTGAG	2 cut(s)	388, 401
BsaAI	YACGTR	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	13
BseAI	TCCGGA	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	78, 221, 578
BseXI	GCAGC	3 cut(s)	241, 364, 445
BseYI	CCCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	14, 187
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	237, 270, 343, 469
BspACI	CCGC	2 cut(s)	11, 223
BspANI	GGCC	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	186
BspPI	GGATC	2 cut(s)	351, 477
BspQI	GCTCTTC	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	4 cut(s)	237, 270, 343, 469
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	81, 347
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstKTI	GATC	4 cut(s)	240, 273, 346, 472
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	4 cut(s)	237, 270, 343, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	241, 364, 445
BstX2I	RGATCY	2 cut(s)	343, 469
BstYI	RGATCY	2 cut(s)	343, 469
BsuRI	GGCC	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	232, 482, 586
CviAII	CATG	2 cut(s)	27, 151
CviQI	GTAC	3 cut(s)	232, 482, 586
DdeI	CTNAG	2 cut(s)	81, 347
DpnI	GATC	4 cut(s)	239, 272, 345, 471
DpnII	GATC	4 cut(s)	237, 270, 343, 469
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco57I	CTGAAG	2 cut(s)	59, 149
Eco88I	CYCGRG	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	188
FaeI	CATG	2 cut(s)	30, 154
FaiI	YATR	5 cut(s)	28, 152, 221, 275, 296
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	2 cut(s)	26, 150
FauI	CCCGC	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	4 cut(s)	11, 255, 378, 459
Fsp4HI	GCNGC	4 cut(s)	11, 255, 378, 459
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	4 cut(s)	11, 255, 378, 459
GsaI	CCCAGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	14, 187
Hin1II	CATG	2 cut(s)	30, 154
HinfI	GANTC	2 cut(s)	315, 412
HpaII	CCGG	2 cut(s)	14, 187
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	482, 510
Hpy188I	TCNGA	2 cut(s)	129, 320
Hpy188III	TCNNGA	4 cut(s)	60, 187, 401, 418
Hpy8I	GTNNAC	2 cut(s)	482, 510
HpyAV	CCTTC	3 cut(s)	97, 184, 590
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	3 cut(s)	95, 263, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	81, 347
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	30, 154
Kpn2I	TCCGGA	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	4 cut(s)	237, 270, 343, 469
LguI	GCTCTTC	1 cut(s)	483
LpnPI	CCDG	5 cut(s)	27, 200, 213, 289, 414
Lsp1109I	GCAGC	3 cut(s)	241, 364, 445
LweI	GCATC	2 cut(s)	250, 492
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	4 cut(s)	239, 272, 345, 471
MboI	GATC	4 cut(s)	237, 270, 343, 469
MboII	GAAGA	3 cut(s)	31, 52, 500
MflI	RGATCY	2 cut(s)	343, 469
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	171, 423, 437
MlyI	GAGTC	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	186
MseI	TTAA	2 cut(s)	528, 539
MslI	CAYNNNNRTG	1 cut(s)	82
MspI	CCGG	2 cut(s)	14, 187
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	4 cut(s)	237, 270, 343, 469
NlaIII	CATG	2 cut(s)	30, 154
NmuCI	GTSAC	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	4 cut(s)	12, 256, 379, 460
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Ppu21I	YACGTR	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	343, 469
RsaI	GTAC	3 cut(s)	233, 483, 587
RsaNI	GTAC	3 cut(s)	232, 482, 586
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	528, 539
SatI	GCNGC	4 cut(s)	11, 255, 378, 459
Sau3AI	GATC	4 cut(s)	237, 270, 343, 469
Sau96I	GGNCC	1 cut(s)	193
ScaI	AGTACT	1 cut(s)	587
SchI	GAGTC	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	9 cut(s)	55, 108, 126, 374, 408, 481, 487, 495, 601
SfaNI	GCATC	2 cut(s)	250, 492
SgrAI	CRCCGGYG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	367, 416
SmoI	CTYRAG	2 cut(s)	367, 416
Sse9I	AATT	3 cut(s)	171, 423, 437
SsiI	CCGC	2 cut(s)	11, 223
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	1 cut(s)	50
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	171, 423, 437
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	528, 539
Tru9I	TTAA	2 cut(s)	528, 539
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	3 cut(s)	254, 377, 458
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	566, 567
TspGWI	ACGGA	2 cut(s)	167, 368
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	423, 437
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.