Rmu_sc0002535.1_g000006

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002535.1
OG0017987
Physical Location & Seq
Reverse (-)
22228 .. 32708
10481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002535.1_g000006.1.cds

Sequence Viewer

Length: 1227 bp
atggatcctaataagtgcatgttctttgacagtgtgaagacaattcgtacttgccagctgcaaacctcaaatagtaattcttccttagcatccagatcagcaaaagcagatggcatgcatttcagtaacaatggaatactgtttttggtggtggagtattatttcagtgatctgaacttagctactactgatcatcttatgaggttcataaacaaagaccctgaaggatttgtgccaatatctgttgttgcatctttcaagaagattaaggccctcgtaagtagtcattcccagcttgcaactgtattgcggaactcctcaaagcttcagcaattgtcccccgtgagccttcctctggcccttagctctgttctatgggtttcaaggttctggagtcctggagcagacctcctctgggaatctgcattaaatgacgtccgggctcaaacaaacgctttgagggaatcaaaactgaaaacaatacagcgcattagaaaagaaatcgcctgttcccttcgccaaggtcagtcacaagaagagcaggctgttcaccaggctgggcagttattaaaagagatggggtcttacaatgcacttcaaatcatacggccatcttgtgaaggcatacttatcaggcttatcttcatcgcaaggcaaaggaagtgtcctgaagatcttaaaatggagattcaaaacttgagctttgctgcttcaaggtgtctagatataccaggcttgaaggctctcaaagacattttcgagaagagatttgggaaaaaatttgtggctgaagctacaaatcttcgaaccgggtgtcatgtacaaagagagatccgaaaattttttggtggttctgctaaacgtgtgcaagtaaacattgagcctaatggcgatggaactaggtactttcaccaaacaactccatgttcagatgtcgagtctgtttatcaagattgtgatgaatatctctatccagagccatctcctgctgctcctcatacacaccctaatttgccagactgtgataatgtgaggctccggtgtagtgctccgtgcaagggaggcgatgcaaggcggaggcagtgctgcacgcccgtgtgggctgcgcaggcgctaggtgaggccgtgggttgcagcagtagcagtgttgcagctgggttcgctgtcggaagaaagattctgatgggaggccgatgttgtgctgctgacctgcagtgtgtccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

408

Amino Acids

45.21

Weight (kDa)

9.08

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017987)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19470
rosa_laevigata RLG00000012664
rosa_multiflora Rmu_sc0002535.1_g000006
rosa_roxburghii Rroxscaffold_7G00183450 Rroxscaffold_7G00183460 Rroxscaffold_7G00183570
rosa_samantha Rh6BG283800 Rh6BG284300 Rh6BG284400
rosa_wichuraiana Rw0G000380 Rw6G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 438
Acc16I TGCGCA 1 cut(s) 1107
Acc36I ACCTGC 1 cut(s) 1218
AciI CCGC 3 cut(s) 310, 1075, 1222
AclWI GGATC 2 cut(s) 12, 826
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 2 cut(s) 779, 839
AcuI CTGAAG 4 cut(s) 243, 311, 690, 810
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 3 cut(s) 49, 822, 905
AfiI CCNNNNNNNGG 3 cut(s) 355, 415, 1058
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 6 cut(s) 259, 384, 599, 692, 714, 739
AjnI CCWGG 3 cut(s) 397, 552, 730
AleI CACNNNNGTG 1 cut(s) 1094
AluBI AGCT 8 cut(s) 58, 182, 295, 325, 366, 702, 794, 1154
AluI AGCT 8 cut(s) 58, 182, 295, 325, 366, 702, 794, 1154
Alw21I GWGCWC 1 cut(s) 1051
AlwI GGATC 2 cut(s) 12, 826
AoxI GGCC 5 cut(s) 270, 357, 608, 1122, 1189
ApeKI GCWGC 8 cut(s) 58, 707, 989, 1086, 1103, 1134, 1151, 1202
ApoI RAATTY 2 cut(s) 779, 839
ArsI GACNNNNNNTTYG 4 cut(s) 649, 681, 799, 831
AspLEI GCGC 3 cut(s) 489, 1108, 1114
AspS9I GGNCC 2 cut(s) 271, 358
AsuC2I CCSGG 2 cut(s) 440, 811
AsuHPI GGTGA 3 cut(s) 542, 902, 1130
AsuII TTCGAA 1 cut(s) 805
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 1051
BbvI GCAGC 8 cut(s) 45, 694, 976, 1073, 1090, 1146, 1163, 1189
BccI CCATC 6 cut(s) 104, 571, 619, 887, 988, 1177
BceAI ACGGC 2 cut(s) 623, 1109
BciT130I CCWGG 3 cut(s) 399, 554, 732
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 2 cut(s) 440, 811
BfaI CTAG 4 cut(s) 722, 900, 1115, 1225
BfmI CTRYAG 1 cut(s) 1211
BfoI RGCGCY 1 cut(s) 1115
BfuAI ACCTGC 1 cut(s) 1218
BglII AGATCT 1 cut(s) 673
BisI GCNGC 8 cut(s) 59, 708, 990, 1087, 1104, 1135, 1152, 1203
BlsI GCNGC 8 cut(s) 60, 709, 991, 1088, 1105, 1136, 1153, 1204
Bme1390I CCNGG 5 cut(s) 399, 440, 554, 732, 811
BmgT120I GGNCC 2 cut(s) 271, 358
BmiI GGNNCC 2 cut(s) 6, 1037
BmrFI CCNGG 5 cut(s) 399, 440, 554, 732, 811
BmsI GCATC 3 cut(s) 98, 260, 1057
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 4 cut(s) 337, 369, 393, 425
BpmI CTGGAG 2 cut(s) 412, 420
Bpu10I CCTNAGC 2 cut(s) 85, 362
Bpu14I TTCGAA 1 cut(s) 805
BpuEI CTTGAG 1 cut(s) 718
BpuMI CCSGG 2 cut(s) 440, 811
BsaBI GATNNNNATC 1 cut(s) 963
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 520, 1125
BsaWI WCCGGW 1 cut(s) 1038
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 415, 1058
Bse8I GATNNNNATC 1 cut(s) 963
BseBI CCWGG 3 cut(s) 399, 554, 732
BseDI CCNNGG 2 cut(s) 520, 1125
BseGI GGATG 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 3 cut(s) 355, 415, 1058
BseRI GAGGAG 3 cut(s) 307, 401, 984
BseXI GCAGC 8 cut(s) 45, 694, 976, 1073, 1090, 1146, 1163, 1189
BseYI CCCAGC 3 cut(s) 291, 557, 1154
BsgI GTGCAG 1 cut(s) 1072
BshFI GGCC 5 cut(s) 272, 359, 610, 1124, 1191
BsiHKAI GWGCWC 1 cut(s) 1051
BsiSI CCGG 3 cut(s) 439, 810, 1039
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 3 cut(s) 355, 415, 1058
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 5 cut(s) 272, 359, 610, 1124, 1191
Bsp119I TTCGAA 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 445, 1051
Bsp1407I TGTACA 1 cut(s) 820
Bsp143I GATC 6 cut(s) 4, 95, 169, 190, 673, 831
BspACI CCGC 3 cut(s) 310, 1075, 1222
BspANI GGCC 5 cut(s) 272, 359, 610, 1124, 1191
BspLI GGNNCC 2 cut(s) 6, 1037
BspMAI CTGCAG 1 cut(s) 1215
BspMI ACCTGC 1 cut(s) 1218
BspPI GGATC 2 cut(s) 12, 826
BspQI GCTCTTC 1 cut(s) 531
BspT104I TTCGAA 1 cut(s) 805
BsrGI TGTACA 1 cut(s) 820
BssECI CCNNGG 2 cut(s) 520, 1125
BssMI GATC 6 cut(s) 4, 95, 169, 190, 673, 831
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 520
Bst2UI CCWGG 3 cut(s) 399, 554, 732
Bst4CI ACNGT 4 cut(s) 32, 141, 304, 1022
Bst6I CTCTTC 2 cut(s) 531, 758
BstACI GRCGYC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 820
BstBI TTCGAA 1 cut(s) 805
BstC8I GCNNGC 6 cut(s) 56, 116, 297, 543, 1091, 1110
BstDEI CTNAG 3 cut(s) 85, 178, 362
BstDSI CCRYGG 1 cut(s) 1125
BstF5I GGATG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 1115
BstHHI GCGC 3 cut(s) 489, 1108, 1114
BstKTI GATC 6 cut(s) 7, 98, 172, 193, 676, 834
BstMBI GATC 6 cut(s) 4, 95, 169, 190, 673, 831
BstMWI GCNNNNNNNGC 4 cut(s) 1062, 1109, 1140, 1160
BstNI CCWGG 3 cut(s) 399, 554, 732
BstNSI RCATGY 2 cut(s) 22, 118
BstSCI CCNGG 5 cut(s) 397, 438, 552, 730, 809
BstSFI CTRYAG 1 cut(s) 1211
BstV1I GCAGC 8 cut(s) 45, 694, 976, 1073, 1090, 1146, 1163, 1189
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 3 cut(s) 4, 673, 831
BstYI RGATCY 3 cut(s) 4, 673, 831
BsuRI GGCC 5 cut(s) 272, 359, 610, 1124, 1191
BtgI CCRYGG 1 cut(s) 1125
BtgZI GCGATG 3 cut(s) 631, 906, 1080
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 3 cut(s) 1088, 1150, 1220
BtsIMutI CAGTG 5 cut(s) 37, 172, 1088, 1150, 1220
BveI ACCTGC 1 cut(s) 1218
Cac8I GCNNGC 6 cut(s) 56, 116, 297, 543, 1091, 1110
CfoI GCGC 3 cut(s) 489, 1108, 1114
Cfr13I GGNCC 2 cut(s) 271, 358
Csp6I GTAC 3 cut(s) 48, 821, 904
CviAII CATG 4 cut(s) 19, 115, 818, 924
CviQI GTAC 3 cut(s) 48, 821, 904
DdeI CTNAG 3 cut(s) 85, 178, 362
DpnI GATC 6 cut(s) 6, 97, 171, 192, 675, 833
DpnII GATC 6 cut(s) 4, 95, 169, 190, 673, 831
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 2 cut(s) 531, 758
EarI CTCTTC 2 cut(s) 531, 758
EciI GGCGGA 1 cut(s) 1090
Eco130I CCWWGG 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 445
Eco57I CTGAAG 4 cut(s) 243, 311, 690, 810
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 3 cut(s) 397, 552, 730
EcoT14I CCWWGG 1 cut(s) 520
EcoT22I ATGCAT 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 4 cut(s) 22, 118, 821, 927
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 322
FatI CATG 4 cut(s) 18, 114, 817, 923
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 8 cut(s) 59, 708, 990, 1087, 1104, 1135, 1152, 1203
FokI GGATG 1 cut(s) 76
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 8 cut(s) 59, 708, 990, 1087, 1104, 1135, 1152, 1203
FspBI CTAG 4 cut(s) 722, 900, 1115, 1225
FspI TGCGCA 1 cut(s) 1107
GlaI GCGC 3 cut(s) 488, 1107, 1113
GluI GCNGC 8 cut(s) 59, 708, 990, 1087, 1104, 1135, 1152, 1203
GsaI CCCAGC 3 cut(s) 295, 561, 1158
GsuI CTGGAG 2 cut(s) 412, 420
HaeII RGCGCY 1 cut(s) 1115
HaeIII GGCC 5 cut(s) 272, 359, 610, 1124, 1191
HapII CCGG 3 cut(s) 439, 810, 1039
HhaI GCGC 3 cut(s) 489, 1108, 1114
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 4 cut(s) 22, 118, 821, 927
Hin6I GCGC 3 cut(s) 487, 1106, 1112
HinP1I GCGC 3 cut(s) 487, 1106, 1112
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 6 cut(s) 394, 419, 464, 688, 938, 1177
HpaII CCGG 3 cut(s) 439, 810, 1039
HphI GGTGA 3 cut(s) 542, 902, 1130
Hpy166II GTNNAC 2 cut(s) 550, 874
Hpy188I TCNGA 5 cut(s) 174, 836, 931, 1169, 1182
Hpy188III TCNNGA 8 cut(s) 93, 259, 391, 668, 722, 760, 950, 974
Hpy8I GTNNAC 2 cut(s) 550, 874
HpyAV CCTTC 5 cut(s) 218, 359, 524, 614, 733
HpyCH4III ACNGT 4 cut(s) 32, 141, 304, 1022
HpyCH4IV ACGT 2 cut(s) 435, 862
HpyF10VI GCNNNNNNNGC 4 cut(s) 1062, 1109, 1140, 1160
HpyF3I CTNAG 3 cut(s) 85, 178, 362
HpySE526I ACGT 2 cut(s) 435, 862
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 4 cut(s) 22, 118, 821, 927
HspAI GCGC 3 cut(s) 487, 1106, 1112
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 6 cut(s) 4, 95, 169, 190, 673, 831
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 4 cut(s) 401, 997, 1041, 1054
Lsp1109I GCAGC 8 cut(s) 45, 694, 976, 1073, 1090, 1146, 1163, 1189
LweI GCATC 3 cut(s) 98, 260, 1057
MaeI CTAG 4 cut(s) 722, 900, 1115, 1225
MaeII ACGT 2 cut(s) 435, 862
MaeIII GTNAC 2 cut(s) 125, 528
MalI GATC 6 cut(s) 6, 97, 171, 192, 675, 833
MboI GATC 6 cut(s) 4, 95, 169, 190, 673, 831
MboII GAAGA 9 cut(s) 49, 72, 274, 548, 634, 683, 775, 794, 1182
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 3 cut(s) 4, 673, 831
MhlI GDGCHC 2 cut(s) 445, 1051
MluCI AATT 6 cut(s) 42, 76, 332, 779, 839, 1009
MlyI GAGTC 2 cut(s) 403, 947
MmeI TCCRAC 1 cut(s) 1147
Mph1103I ATGCAT 1 cut(s) 120
MseI TTAA 4 cut(s) 267, 428, 569, 678
MslI CAYNNNNRTG 1 cut(s) 1094
MspA1I CMGCKG 2 cut(s) 58, 1154
MspI CCGG 3 cut(s) 439, 810, 1039
MspR9I CCNGG 5 cut(s) 399, 440, 554, 732, 811
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 3 cut(s) 399, 554, 732
MwoI GCNNNNNNNGC 4 cut(s) 1062, 1109, 1140, 1160
NciI CCSGG 2 cut(s) 440, 811
NdeII GATC 6 cut(s) 4, 95, 169, 190, 673, 831
NlaIII CATG 4 cut(s) 22, 118, 821, 927
NlaIV GGNNCC 2 cut(s) 6, 1037
NmuCI GTSAC 1 cut(s) 528
NsbI TGCGCA 1 cut(s) 1107
NsiI ATGCAT 1 cut(s) 120
NspI RCATGY 2 cut(s) 22, 118
NspV TTCGAA 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 1094
PaeI GCATGC 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 531
PfeI GAWTC 4 cut(s) 419, 464, 688, 1177
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 8 cut(s) 60, 709, 991, 1088, 1105, 1136, 1153, 1204
PleI GAGTC 2 cut(s) 402, 946
PpsI GAGTC 2 cut(s) 402, 946
Psp6I CCWGG 3 cut(s) 397, 552, 730
PspFI CCCAGC 3 cut(s) 291, 557, 1154
PspGI CCWGG 3 cut(s) 397, 552, 730
PspN4I GGNNCC 2 cut(s) 6, 1037
PspPI GGNCC 2 cut(s) 271, 358
PstI CTGCAG 1 cut(s) 1215
PsuI RGATCY 3 cut(s) 4, 673, 831
PvuII CAGCTG 2 cut(s) 58, 1154
RsaI GTAC 3 cut(s) 49, 822, 905
RsaNI GTAC 3 cut(s) 48, 821, 904
RseI CAYNNNNRTG 1 cut(s) 1094
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 4 cut(s) 267, 428, 569, 678
SatI GCNGC 8 cut(s) 59, 708, 990, 1087, 1104, 1135, 1152, 1203
Sau3AI GATC 6 cut(s) 4, 95, 169, 190, 673, 831
Sau96I GGNCC 2 cut(s) 271, 358
SchI GAGTC 2 cut(s) 403, 947
ScrFI CCNGG 5 cut(s) 399, 440, 554, 732, 811
SduI GDGCHC 2 cut(s) 445, 1051
SfaNI GCATC 3 cut(s) 98, 260, 1057
SfcI CTRYAG 1 cut(s) 1211
SfuI TTCGAA 1 cut(s) 805
SmiMI CAYNNNNRTG 1 cut(s) 1094
SmlI CTYRAG 1 cut(s) 697
SmoI CTYRAG 1 cut(s) 697
SphI GCATGC 1 cut(s) 118
Sse9I AATT 6 cut(s) 42, 76, 332, 779, 839, 1009
SsiI CCGC 3 cut(s) 310, 1075, 1222
SspMI CTAG 4 cut(s) 722, 900, 1115, 1225
StyD4I CCNGG 5 cut(s) 397, 438, 552, 730, 809
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 4 cut(s) 32, 141, 304, 1022
TaiI ACGT 2 cut(s) 438, 865
TaqI TCGA 3 cut(s) 759, 805, 936
TasI AATT 6 cut(s) 42, 76, 332, 779, 839, 1009
TatI WGTACW 1 cut(s) 820
TfiI GAWTC 4 cut(s) 419, 464, 688, 1177
Tru1I TTAA 4 cut(s) 267, 428, 569, 678
Tru9I TTAA 4 cut(s) 267, 428, 569, 678
TscAI CASTG 5 cut(s) 37, 172, 1088, 1150, 1220
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 8 cut(s) 58, 707, 989, 1086, 1103, 1134, 1151, 1202
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 3 cut(s) 196, 634, 975
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 5 cut(s) 37, 172, 1088, 1150, 1220
XapI RAATTY 2 cut(s) 779, 839
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 2 cut(s) 22, 118
XspI CTAG 4 cut(s) 722, 900, 1115, 1225
ZraI GACGTC 1 cut(s) 436
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.