Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017987

Physical Location & Seq

Genomic Coordinates Forward (+)

21043448 .. 21045394

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGAAAACGTGGAGGCGACTGAAGAAATTTTTGGGTTTGTCCAGAGGAGATTTCAACATAGCAAAGTGGGAAACTGCATTGGAGAAGGTAGTGGCTCGAACAGAGGTTCTGAAGCAACCGAGAGAGGAATACATGGGGCAGTTGAGAAAAGAAATTGTCCGTTCCCTCCGGAAGGGCCAATCACTAGAAGAGTCTGCTCTTATGCGGGCCGACTACTTGATCCAAGAAAAGAGGGCTGCTGATGCAAATGAGATCCCTTATGTTGTGAGAGCATATTTAACAGGCTTCATATATAGAATCCGATGGCAAAGGAAATGTCCCGAGGATCTTGTAGGGAAGTTTCAAAACTTGAGCTTCGCTGCCTCGAGATGTTTGGATATTCCAGAGCTAAAGACTCTCCAAAAAATTTTTGAGACAGAATTTGGGAGAAACTTTGTGGCTGCAAGTAAGGATCTCCGAGGTGTCCATAAAGAGCTGTTTGGGATGCTATCTACTAAAAGACCTGACCTTGAAAATAAGTTGGCGATATTGAATGAAATGGCAGAGAACAATATTGTTTGGAAGTACTCCAAAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1 RabGAP-TBC

Protein Analysis

195

Amino Acids

22.74

Weight (kDa)

9.62

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	26 - 185	2.2e-24	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017987)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19470
rosa_laevigata	RLG00000012664
rosa_multiflora	Rmu_sc0002535.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183450 Rroxscaffold_7G00183460 Rroxscaffold_7G00183570
rosa_samantha	Rh6BG283800 Rh6BG284300 Rh6BG284400
rosa_wichuraiana	Rw0G000380 Rw6G024340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	4 cut(s)	217, 250, 336, 462
AcsI	RAATTY	3 cut(s)	29, 408, 422
AcuI	CTGAAG	2 cut(s)	44, 134
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	58, 347, 515, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	3 cut(s)	357, 391, 478
AluI	AGCT	3 cut(s)	357, 391, 478
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	4 cut(s)	217, 250, 336, 462
Ama87I	CYCGRG	2 cut(s)	323, 367
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	2 cut(s)	178, 210
ApeKI	GCWGC	3 cut(s)	239, 362, 443
ApoI	RAATTY	3 cut(s)	29, 408, 422
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AspS9I	GGNCC	2 cut(s)	178, 210
AvaI	CYCGRG	2 cut(s)	323, 367
BbvI	GCAGC	3 cut(s)	226, 349, 430
BccI	CCATC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	240, 363, 444
BlsI	GCNGC	3 cut(s)	241, 364, 445
BmcAI	AGTACT	1 cut(s)	569
BmeT110I	CYCGRG	2 cut(s)	323, 367
BmgT120I	GGNCC	2 cut(s)	178, 210
BmsI	GCATC	2 cut(s)	235, 477
BpuEI	CTTGAG	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	324, 460
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	324, 460
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	226, 349, 430
BshFI	GGCC	2 cut(s)	180, 212
BsiHKCI	CYCGRG	2 cut(s)	323, 367
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	180, 212
BsoBI	CYCGRG	2 cut(s)	323, 367
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	222, 255, 328, 454
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	180, 212
BspEI	TCCGGA	1 cut(s)	171
BspPI	GGATC	4 cut(s)	217, 250, 336, 462
BssECI	CCNNGG	2 cut(s)	324, 460
BssMI	GATC	4 cut(s)	222, 255, 328, 454
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	492
BstKTI	GATC	4 cut(s)	225, 258, 331, 457
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	4 cut(s)	222, 255, 328, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	226, 349, 430
BstX2I	RGATCY	3 cut(s)	255, 328, 454
BstYI	RGATCY	3 cut(s)	255, 328, 454
BsuRI	GGCC	2 cut(s)	180, 212
BtsCI	GGATG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	178, 210
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	9 cut(s)	98, 180, 212, 239, 288, 357, 391, 443, 478
CviKI_1	RGCY	9 cut(s)	98, 180, 212, 239, 288, 357, 391, 443, 478
CviQI	GTAC	1 cut(s)	568
DpnI	GATC	4 cut(s)	224, 257, 330, 456
DpnII	GATC	4 cut(s)	222, 255, 328, 454
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco57I	CTGAAG	2 cut(s)	44, 134
Eco88I	CYCGRG	2 cut(s)	323, 367
EcoNI	CCTNNNNNAGG	1 cut(s)	173
FaeI	CATG	1 cut(s)	139
FaiI	YATR	9 cut(s)	62, 137, 206, 264, 277, 293, 295, 297, 471
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	240, 363, 444
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	3 cut(s)	240, 363, 444
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	3 cut(s)	240, 363, 444
HaeIII	GGCC	2 cut(s)	180, 212
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	3 cut(s)	194, 300, 397
HpaII	CCGG	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	114, 305, 461
Hpy188III	TCNNGA	5 cut(s)	45, 172, 323, 369, 386
HpyAV	CCTTC	3 cut(s)	82, 169, 572
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	80, 248, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	139
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	222, 255, 328, 454
LpnPI	CCDG	5 cut(s)	58, 185, 270, 399, 519
Lsp1109I	GCAGC	3 cut(s)	226, 349, 430
LweI	GCATC	2 cut(s)	235, 477
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	11
MalI	GATC	4 cut(s)	224, 257, 330, 456
MboI	GATC	4 cut(s)	222, 255, 328, 454
MboII	GAAGA	2 cut(s)	37, 203
MflI	RGATCY	3 cut(s)	255, 328, 454
MluCI	AATT	4 cut(s)	29, 156, 408, 422
MlyI	GAGTC	2 cut(s)	203, 391
MnlI	CCTC	9 cut(s)	9, 41, 100, 121, 179, 228, 319, 376, 455
MroI	TCCGGA	1 cut(s)	171
MseI	TTAA	1 cut(s)	281
MspI	CCGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	4 cut(s)	222, 255, 328, 454
NlaIII	CATG	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	241, 364, 445
PleI	GAGTC	2 cut(s)	202, 391
PpsI	GAGTC	2 cut(s)	202, 391
PspPI	GGNCC	2 cut(s)	178, 210
PsuI	RGATCY	3 cut(s)	255, 328, 454
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	240, 363, 444
Sau3AI	GATC	4 cut(s)	222, 255, 328, 454
Sau96I	GGNCC	2 cut(s)	178, 210
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	2 cut(s)	203, 391
SfaNI	GCATC	2 cut(s)	235, 477
Sfr274I	CTCGAG	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	352, 367
SmoI	CTYRAG	2 cut(s)	352, 367
Sse9I	AATT	4 cut(s)	29, 156, 408, 422
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	188
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	100, 368
TasI	AATT	4 cut(s)	29, 156, 408, 422
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	3 cut(s)	239, 362, 443
TspDTI	ATGAA	2 cut(s)	280, 552
TspGWI	ACGGA	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	3 cut(s)	29, 408, 422
XhoI	CTCGAG	1 cut(s)	367
XspI	CTAG	1 cut(s)	188
ZrmI	AGTACT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.