Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009380

Physical Location & Seq

Genomic Coordinates Reverse (-)

16594217 .. 16598993

Gene Structure 4777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGTAGTTCAGTCATGCTGCACAGCCTCTGCTTCACAACCCAACTCTCTCCAACATGTTTCAACACTCCAACTCTATCTTTCACCCGCTCTCAATTCGTTTCTTCCAATTCATTCTTGAGTTTAAAGAATTCAACTCTGCGAATTAAGAGCCCCACAACTCGGACTTCTGGCGTTGTATTTGCTGCGCAGTCCAACATCTTCAAAGCTCTTCAAACAGCATGGAATGTTGGGAAAGATGGGATCGAGGCAGGAACAAGTCTTGTCCCTGCTTCTATACCAAGACCGATTGCAAGGATTTCTGTGACAATAGTTGCATTGTCCGTTTCACTCTTTGTACTCAAATCTTTCGTTTCCACAGTTTTCTTTGTGCTGGCCACAATGGGACTTGCATATTTTGTATTCATAGCTTTAAATAAGGATGAAGGACCAAAGGGCACTGGAGGCACCACCAAGACACCAAAGGAGAATGGTGTGGATGATAGTCTAGAAGAAGCCAGAAGAATCATGGAGAAGTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

18.77

Weight (kDa)

9.83

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13220
fragaria_vesca	FvH4_2g19580 FvH4_2g19580
malus_domestica	MD05G1180900.v1.1 MD10G1169600.v1.1
prunus_persica	Prupe.8G207500_v2.0.a1 Prupe.8G207500_v2.0.a1
pyrus_communis	pycom05g16660 pycom05g17620 pycom10g14620
rosa_chinensis	RchiOBHm_Chr6g0285341
rosa_laevigata	RLG00000012652
rosa_multiflora	Rmu_sc0011958.1_g000004 Rmu_sc0015970.1_g000001 Rmu_sc0040074.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183340
rosa_rugosa	Rorug06G0173700
rosa_samantha	Rh6AG284400 Rh6BG285200 Rh6CG286700 Rh6DG279700
rosa_wichuraiana	Rw6G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	90
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	339, 518
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	64, 135, 205, 215
AluBI	AGCT	2 cut(s)	209, 410
AluI	AGCT	2 cut(s)	209, 410
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	19, 185
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	6, 172
BccI	CCATC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	488
BisI	GCNGC	2 cut(s)	20, 186
BlsI	GCNGC	2 cut(s)	21, 187
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	445
BseGI	GGATG	2 cut(s)	427, 484
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	6, 172
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	446
BslFI	GGGAC	2 cut(s)	251, 399
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	251, 399
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	155, 440
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	445
BssMI	GATC	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	427, 484
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	440
BstV1I	GCAGC	2 cut(s)	6, 172
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	427, 484
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	30
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	338, 517
CviAII	CATG	4 cut(s)	16, 57, 222, 508
CviJI	RGCY	6 cut(s)	27, 153, 209, 377, 410, 497
CviKI_1	RGCY	6 cut(s)	27, 153, 209, 377, 410, 497
CviQI	GTAC	2 cut(s)	338, 517
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DraI	TTTAAA	2 cut(s)	126, 414
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	155
FaeI	CATG	4 cut(s)	19, 60, 225, 511
FaiI	YATR	7 cut(s)	17, 58, 223, 278, 394, 407, 509
FaqI	GGGAC	2 cut(s)	251, 399
FatI	CATG	4 cut(s)	15, 56, 221, 507
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	2 cut(s)	20, 186
FokI	GGATG	2 cut(s)	434, 491
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	20, 186
FspBI	CTAG	1 cut(s)	488
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	20, 186
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	19, 60, 225, 511
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	504
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	118, 488
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	22, 293, 317, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	19, 60, 225, 511
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	243
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	6 cut(s)	156, 237, 282, 359, 426, 511
Lsp1109I	GCAGC	2 cut(s)	6, 172
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	245
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	1 cut(s)	243
MboII	GAAGA	5 cut(s)	96, 193, 203, 503, 513
MhlI	GDGCHC	2 cut(s)	155, 440
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	95, 109, 130, 144
MluNI	TGGCCA	1 cut(s)	377
MmeI	TCCRAC	3 cut(s)	77, 95, 219
MnlI	CCTC	3 cut(s)	38, 241, 437
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	125, 147, 413
Msp20I	TGGCCA	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	4 cut(s)	19, 60, 225, 511
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	189
NspI	RCATGY	1 cut(s)	60
PciI	ACATGT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	21, 187
PscI	ACATGT	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	339, 518
RsaNI	GTAC	2 cut(s)	338, 517
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	125, 147, 413
SatI	GCNGC	2 cut(s)	20, 186
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	155, 440
SetI	ASST	2 cut(s)	211, 412
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	4 cut(s)	95, 109, 130, 144
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	488
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	4 cut(s)	95, 109, 130, 144
TatI	WGTACW	2 cut(s)	337, 516
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	3 cut(s)	125, 147, 413
Tru9I	TTAA	3 cut(s)	125, 147, 413
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	19, 185
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	102, 394, 438
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.