Rmu_sc0011958.1_g000004

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011958.1
Physical Location & Seq
Reverse (-)
31928 .. 32686
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011958.1_g000004.1.cds

Sequence Viewer

Length: 366 bp
atgagttctttgttgtttattttaactatatatatattatgtaaaatagctttacaaacagcatggaatgttgggaaagatgggattgaggcaggaacaagtcttgtccctgcttctgtaccgagaccaattgcaaggatttctgtgacaatagttgcattgtctgtttcactatttgtactcaaatctttcgtttccacagttttctttgtgctggccacaatgggacttgcatattttatattcatagctttgaacaaggatgaagggccaaggggcaatggaggcaccacctcgacaccaaaggaggacggggtggatgatagtctagaagaagccagaagaatcatggagaagtacaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.1

Weight (kDa)

7.83

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 216
AfaI GTAC 3 cut(s) 120, 180, 359
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 2 cut(s) 50, 251
AluI AGCT 2 cut(s) 50, 251
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 216, 269
AspS9I GGNCC 1 cut(s) 269
BalI TGGCCA 1 cut(s) 218
BanI GGYRCC 1 cut(s) 287
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 268, 325
BseMI GCAATG 1 cut(s) 286
BshFI GGCC 2 cut(s) 218, 271
BshNI GGYRCC 1 cut(s) 287
BslFI GGGAC 2 cut(s) 92, 240
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 92, 240
BsnI GGCC 2 cut(s) 218, 271
Bso31I GGTCTC 1 cut(s) 118
BspANI GGCC 2 cut(s) 218, 271
BspLI GGNNCC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 216
BstF5I GGATG 2 cut(s) 268, 325
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 285
BsuRI GGCC 2 cut(s) 218, 271
BtsCI GGATG 2 cut(s) 268, 325
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 119, 179, 358
CviAII CATG 2 cut(s) 63, 349
CviJI RGCY 5 cut(s) 50, 218, 251, 271, 338
CviKI_1 RGCY 5 cut(s) 50, 218, 251, 271, 338
CviQI GTAC 3 cut(s) 119, 179, 358
EaeI YGGCCR 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 2 cut(s) 66, 352
FaqI GGGAC 2 cut(s) 92, 240
FatI CATG 2 cut(s) 62, 348
FokI GGATG 2 cut(s) 275, 332
FspBI CTAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 218, 271
Hin1II CATG 2 cut(s) 66, 352
HinfI GANTC 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 134, 158, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 66, 352
LpnPI CCDG 4 cut(s) 78, 123, 200, 352
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 2 cut(s) 344, 354
MfeI CAATTG 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 218
MnlI CCTC 4 cut(s) 82, 278, 301, 304
Mox20I TGGCCA 1 cut(s) 218
MscI TGGCCA 1 cut(s) 218
MseI TTAA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 218
MunI CAATTG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 285
NlaIII CATG 2 cut(s) 66, 352
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 269
RsaI GTAC 3 cut(s) 120, 180, 359
RsaNI GTAC 3 cut(s) 119, 179, 358
SaqAI TTAA 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 269
SetI ASST 3 cut(s) 52, 253, 296
Sse9I AATT 1 cut(s) 129
SspMI CTAG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 296
TasI AATT 1 cut(s) 129
TatI WGTACW 2 cut(s) 178, 357
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 235, 279
XbaI TCTAGA 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.