Rh6AG284400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
48006377 .. 48011705
5329 bp
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UTR
Exon/CDS
Intron
Rh6AG284400.1

Sequence Viewer

Length: 459 bp
ATGGCTGGTTCAGCCATGTTGCACAGCCTATTATGCTGCACAACCCAACTCTCTCCAAAATGTTACAACAATCAAACTCTAGCCTTCTCCCGCTCTCAGTTCGTTTCGTCCAATTCATTGTTCAGTTTAAAGAATCAAACTTTGTCCTCCGCTCTGCAAATTAAGAGGCCCAGAACTCGCAATTCTGGCTTTGTATTCGCTGCGCAGTCCAACATCTTCAAAGCTTTACAAACAGCATGGAATGTTGGGAAAGATGGGATTGAGGCAGGAACAAGTCTTGTCCCTGCTTCTGTACCGAGACCAATTGCAAGGATTTCTGTGACAATAGTTGCATTGTCTGTTTCACTATTTGTACTCAAATCTTTCGTTTCCACAGTTTTCTTTGTGCTGGTATGTTCTCAAGTCTTTCTTTCTAGTAATTCATGTTGGGTTTACTGTTTCTATGAAGTAAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.58

Weight (kDa)

9.69

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AccBSI CCGCTC 2 cut(s) 93, 152
AciI CCGC 2 cut(s) 91, 150
AfaI GTAC 2 cut(s) 294, 354
AgsI TTSAA 1 cut(s) 220
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 224, 453
AluI AGCT 2 cut(s) 224, 453
Alw26I GTCTC 1 cut(s) 292
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 36, 200
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 23, 187
BccI CCATC 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 80, 414
BisI GCNGC 2 cut(s) 37, 201
BlsI GCNGC 2 cut(s) 38, 202
BmgT120I GGNCC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 292
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 2 cut(s) 23, 187
BsgI GTGCAG 1 cut(s) 22
BshFI GGCC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 292
BspACI CCGC 2 cut(s) 91, 150
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 292
BsrBI CCGCTC 2 cut(s) 93, 152
Bst4CI ACNGT 2 cut(s) 376, 437
BstDEI CTNAG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 11, 33, 186
BstV1I GCAGC 2 cut(s) 23, 187
BsuRI GGCC 1 cut(s) 169
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 293, 353
CviAII CATG 3 cut(s) 16, 237, 423
CviJI RGCY 8 cut(s) 5, 14, 27, 83, 169, 189, 224, 453
CviKI_1 RGCY 8 cut(s) 5, 14, 27, 83, 169, 189, 224, 453
CviQI GTAC 2 cut(s) 293, 353
DdeI CTNAG 1 cut(s) 96
DraI TTTAAA 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 292
FaeI CATG 3 cut(s) 19, 240, 426
FaiI YATR 6 cut(s) 17, 34, 238, 394, 424, 444
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 1 cut(s) 266
FatI CATG 3 cut(s) 15, 236, 422
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 37, 201
Fsp4HI GCNGC 2 cut(s) 37, 201
FspBI CTAG 2 cut(s) 80, 414
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 37, 201
HaeIII GGCC 1 cut(s) 169
HhaI GCGC 1 cut(s) 205
Hin1II CATG 3 cut(s) 19, 240, 426
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HindIII AAGCTT 2 cut(s) 222, 451
HinfI GANTC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 433
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 376, 437
HpyCH4V TGCA 5 cut(s) 22, 39, 157, 308, 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 33, 186
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 3 cut(s) 19, 240, 426
HspAI GCGC 1 cut(s) 203
LpnPI CCDG 5 cut(s) 171, 184, 252, 297, 374
Lsp1109I GCAGC 2 cut(s) 23, 187
MaeI CTAG 2 cut(s) 80, 414
MaeIII GTNAC 2 cut(s) 62, 319
MbiI CCGCTC 2 cut(s) 93, 152
MboII GAAGA 1 cut(s) 208
MfeI CAATTG 1 cut(s) 303
MluCI AATT 5 cut(s) 112, 159, 181, 303, 418
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 3 cut(s) 157, 159, 256
MseI TTAA 2 cut(s) 128, 162
MunI CAATTG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 11, 33, 186
NlaIII CATG 3 cut(s) 19, 240, 426
NmuCI GTSAC 1 cut(s) 319
NsbI TGCGCA 1 cut(s) 204
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 38, 202
PspPI GGNCC 1 cut(s) 168
RsaI GTAC 2 cut(s) 294, 354
RsaNI GTAC 2 cut(s) 293, 353
SaqAI TTAA 2 cut(s) 128, 162
SatI GCNGC 2 cut(s) 37, 201
Sau96I GGNCC 1 cut(s) 168
SetI ASST 2 cut(s) 226, 455
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 5 cut(s) 112, 159, 181, 303, 418
SsiI CCGC 2 cut(s) 91, 150
SspMI CTAG 2 cut(s) 80, 414
TaaI ACNGT 2 cut(s) 376, 437
TasI AATT 5 cut(s) 112, 159, 181, 303, 418
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 128, 162
Tru9I TTAA 2 cut(s) 128, 162
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 36, 200
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 105, 411, 459
XspI CTAG 2 cut(s) 80, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.