pycom05g17620

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
20760336 .. 20760990
655 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17620.2

Sequence Viewer

Length: 261 bp
ATGGCGGGTTCGGTTATGCTGCAAAGCCTGTGCTGCATAACCGTACAATCCCCAAATTGTTACAAGAATCAATCCCTAGCTTTCACCCACTCTCAGTTCTTCTCCTCCAATTCGTCTTTAAGGCTAAAGAAGCAGTCTTTGCTCTCAGCTATTCGGATTAAGAGGCAGAGGACTCAGAATCATCGCTTTGTTGTTCCTATTGTATTTGCTTCACAGTCCAACTTCTTCAACGGAAGATTAAAGAATATAGACTTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.8

Weight (kDa)

11.01

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 45
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 2 cut(s) 80, 149
AluI AGCT 2 cut(s) 80, 149
ApeKI GCWGC 2 cut(s) 19, 33
AsuHPI GGTGA 1 cut(s) 76
BbvI GCAGC 2 cut(s) 6, 20
BfaI CTAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 20, 34
BlsI GCNGC 2 cut(s) 21, 35
BseMII CTCAG 3 cut(s) 107, 159, 188
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 6, 20
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 106, 158, 187
Bst4CI ACNGT 2 cut(s) 43, 216
BstAPI GCANNNNNTGC 1 cut(s) 139
BstDEI CTNAG 3 cut(s) 93, 145, 174
BstMWI GCNNNNNNNGC 3 cut(s) 33, 130, 139
BstV1I GCAGC 2 cut(s) 6, 20
BtgZI GCGATG 1 cut(s) 167
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 4 cut(s) 27, 80, 124, 149
CviKI_1 RGCY 4 cut(s) 27, 80, 124, 149
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 3 cut(s) 93, 145, 174
Eco57I CTGAAG 1 cut(s) 238
FaiI YATR 3 cut(s) 17, 38, 248
Fnu4HI GCNGC 2 cut(s) 20, 34
Fsp4HI GCNGC 2 cut(s) 20, 34
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 20, 34
HinfI GANTC 3 cut(s) 67, 172, 178
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 156, 177
HpyCH4III ACNGT 2 cut(s) 43, 216
HpyCH4V TGCA 2 cut(s) 22, 36
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 130, 139
HpyF3I CTNAG 3 cut(s) 93, 145, 174
LpnPI CCDG 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 6, 20
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 59
MboII GAAGA 3 cut(s) 91, 217, 246
MluCI AATT 2 cut(s) 55, 109
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 115, 156, 162
MseI TTAA 3 cut(s) 119, 159, 239
MwoI GCNNNNNNNGC 3 cut(s) 33, 130, 139
PfeI GAWTC 2 cut(s) 67, 178
PkrI GCNGC 2 cut(s) 21, 35
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 119, 159, 239
SatI GCNGC 2 cut(s) 20, 34
SchI GAGTC 1 cut(s) 166
SetI ASST 2 cut(s) 82, 151
SgeI CNNG 4 cut(s) 18, 40, 76, 89
Sse9I AATT 2 cut(s) 55, 109
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 43, 216
TasI AATT 2 cut(s) 55, 109
TfiI GAWTC 2 cut(s) 67, 178
Tru1I TTAA 3 cut(s) 119, 159, 239
Tru9I TTAA 3 cut(s) 119, 159, 239
TseI GCWGC 2 cut(s) 19, 33
TspGWI ACGGA 1 cut(s) 246
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.