Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009380

Physical Location & Seq

Genomic Coordinates Reverse (-)

26157520 .. 26159845

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1169600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCCGGTTCGGTTATGCTGCAAAGCCTGTGCTGCATAACCCCACAATCCCCAAATTGTTACAAGAATCAAACCCTAGCTTTCTCCAACTCTCAGCTCTTCTCCTCCAGTTCATCTTTTAGATTAAACAAACAGACTTTACTCTCAGCTATTCGAATTAAGAGGCAGAGGACTCAGAATCATCGCTCTGTGGTTCCTGTTGTGTTCGCTTCACAGTCCAACTTCTTCAAAGTTCTGCAAACGGCATGGAAGGTTGGGAGAGATGGAGTTGAGGCAGGAACCAATCTTGTCCCGAATTCAGTACCGAGACCAGTTGCAAGGGTTTCTGTGACTATAGTTGCATTGACACTTTCACTGTTTGTGCTCAAATCTTTCCTGTCTACAGCTTTCTTTGCGCTGGCTACGATGGGACTTGTATACTTTATATTCATTGCTTTGAATAAGGATGAAGGGCCCAGGGGGGGTGGAGGCACCACCTCAACGCCAAAGGAGGACGGGATAGACGACAGTCTAGAAGAAGCCAGAAGAATCATGGAGAAGTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

9.96

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13220
fragaria_vesca	FvH4_2g19580 FvH4_2g19580
malus_domestica	MD05G1180900.v1.1 MD10G1169600.v1.1
prunus_persica	Prupe.8G207500_v2.0.a1 Prupe.8G207500_v2.0.a1
pyrus_communis	pycom05g16660 pycom05g17620 pycom10g14620
rosa_chinensis	RchiOBHm_Chr6g0285341
rosa_laevigata	RLG00000012652
rosa_multiflora	Rmu_sc0011958.1_g000004 Rmu_sc0015970.1_g000001 Rmu_sc0040074.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183340
rosa_rugosa	Rorug06G0173700
rosa_samantha	Rh6AG284400 Rh6BG285200 Rh6CG286700 Rh6DG279700
rosa_wichuraiana	Rw6G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	2 cut(s)	380, 417
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	2 cut(s)	303, 542
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	229, 439
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	4 cut(s)	80, 97, 149, 386
AluI	AGCT	4 cut(s)	80, 97, 149, 386
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	2 cut(s)	3, 452
ApaI	GGGCCC	1 cut(s)	456
ApeKI	GCWGC	2 cut(s)	19, 33
ApoI	RAATTY	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	452, 453
AsuII	TTCGAA	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	6, 20
BccI	CCATC	2 cut(s)	257, 400
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	77, 512
BfmI	CTRYAG	2 cut(s)	333, 381
BisI	GCNGC	2 cut(s)	20, 34
BlsI	GCNGC	2 cut(s)	21, 35
Bme1390I	CCNGG	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	452, 453
BmiI	GGNNCC	4 cut(s)	195, 280, 454, 472
BmrFI	CCNGG	1 cut(s)	457
BoxI	GACNNNNGTC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	91
Bpu14I	TTCGAA	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	455, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	108, 311
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	455, 456
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	107, 159, 188
BseNI	ACTGG	2 cut(s)	108, 311
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	6, 20
BshFI	GGCC	2 cut(s)	5, 454
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	275, 423
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	275, 423
BsnI	GGCC	2 cut(s)	5, 454
Bso31I	GGTCTC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	154
Bsp120I	GGGCCC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	366, 456
BspANI	GGCC	2 cut(s)	5, 454
BspCNI	CTCAG	3 cut(s)	106, 158, 187
BspLI	GGNNCC	4 cut(s)	195, 280, 454, 472
BspQI	GCTCTTC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	108, 311
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	455, 456
BssNAI	GTATAC	1 cut(s)	418
Bst1107I	GTATAC	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	3 cut(s)	216, 357, 509
Bst6I	CTCTTC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	93, 145, 174
BstF5I	GGATG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 392
BstNI	CCWGG	1 cut(s)	457
BstPAI	GACNNNNGTC	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	2 cut(s)	333, 381
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	6, 20
BstZ17I	GTATAC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	5, 454
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	452, 453
Csp6I	GTAC	2 cut(s)	302, 541
CviAII	CATG	2 cut(s)	246, 532
CviJI	RGCY	9 cut(s)	5, 27, 80, 97, 149, 386, 401, 454, 521
CviKI_1	RGCY	9 cut(s)	5, 27, 80, 97, 149, 386, 401, 454, 521
CviQI	GTAC	2 cut(s)	302, 541
DdeI	CTNAG	3 cut(s)	93, 145, 174
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	2 cut(s)	249, 535
FaiI	YATR	7 cut(s)	17, 38, 247, 335, 418, 425, 533
FaqI	GGGAC	2 cut(s)	275, 423
FatI	CATG	2 cut(s)	245, 531
FblI	GTMKAC	2 cut(s)	380, 417
Fnu4HI	GCNGC	2 cut(s)	20, 34
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	2 cut(s)	20, 34
FspBI	CTAG	2 cut(s)	77, 512
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	20, 34
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	5, 454
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	249, 535
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	4 cut(s)	67, 172, 178, 528
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	381, 418
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	2 cut(s)	292, 512
Hpy8I	GTNNAC	2 cut(s)	381, 418
HpyAV	CCTTC	2 cut(s)	244, 443
HpyCH4III	ACNGT	3 cut(s)	216, 357, 509
HpyCH4V	TGCA	5 cut(s)	22, 36, 238, 317, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 392
HpyF3I	CTNAG	3 cut(s)	93, 145, 174
Hsp92II	CATG	2 cut(s)	249, 535
HspAI	GCGC	1 cut(s)	395
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	2 cut(s)	6, 20
MaeI	CTAG	2 cut(s)	77, 512
MaeIII	GTNAC	2 cut(s)	59, 328
MboII	GAAGA	4 cut(s)	91, 217, 527, 537
MhlI	GDGCHC	2 cut(s)	366, 456
MluCI	AATT	3 cut(s)	55, 156, 295
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	2 cut(s)	111, 243
MnlI	CCTC	7 cut(s)	115, 156, 162, 265, 461, 484, 487
MseI	TTAA	2 cut(s)	125, 159
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	33, 392
NlaIII	CATG	2 cut(s)	249, 535
NlaIV	GGNNCC	4 cut(s)	195, 280, 454, 472
NmuCI	GTSAC	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	154
PasI	CCCWGGG	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	67, 178, 528
PkrI	GCNGC	2 cut(s)	21, 35
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	4 cut(s)	195, 280, 454, 472
PspOMI	GGGCCC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	452, 453
RsaI	GTAC	2 cut(s)	303, 542
RsaNI	GTAC	2 cut(s)	302, 541
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	125, 159
SatI	GCNGC	2 cut(s)	20, 34
Sau96I	GGNCC	2 cut(s)	452, 453
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	2 cut(s)	366, 456
SetI	ASST	6 cut(s)	82, 99, 151, 255, 388, 479
SfcI	CTRYAG	2 cut(s)	333, 381
SfuI	TTCGAA	1 cut(s)	154
Sse9I	AATT	3 cut(s)	55, 156, 295
SspMI	CTAG	2 cut(s)	77, 512
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	3 cut(s)	216, 357, 509
TaqI	TCGA	1 cut(s)	154
TasI	AATT	3 cut(s)	55, 156, 295
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	67, 178, 528
Tru1I	TTAA	2 cut(s)	125, 159
Tru9I	TTAA	2 cut(s)	125, 159
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	19, 33
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	102, 418, 462
TspRI	CASTG	1 cut(s)	360
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	2 cut(s)	380, 417
XspI	CTAG	2 cut(s)	77, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.