Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009380

Physical Location & Seq

Genomic Coordinates Reverse (-)

30826772 .. 30829852

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1180900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGGGTTCGGTTATGCTGCAAAGCCTGTGCTGCATAACCGCACAATCCCCAAATTGTTACAAGAATCAATCCCTAGCTTTCACCCACTCTCAGTTCTTCTCCTCCAATTCATCTTTAAGGCTCAAGAAGCAGTCTTTGCTCTCAGCTATACGGATTAAGAGGCAGAGGACTCAGAATCATCGCTTTGTTGTTCCTGTTGTATTTGCTTCACAGTCCAACATCTTCAAAGCTCTGCAAACGGCATGGAAGGTTGGGCGAGATGGAGTTGAGGCAGGAACCAATCTCGTGCCGAATTCAGTACCGAGACCAGTTGCAAGGGTTTCCGTGACTATAGTGGCGTTGACTCTTTCACTATTTGTGCTCAAATCTTTCCTGTCTACAGCTTTCTTTGTGCTGGCTACGATGGGACTTGTATACTTTATATTCATTGCTTTGAATAAGGATGAAGGGCCGAGGTGGAGTGGAGGCACCACCTCAACACCAAAGGAGGACAGGATGGACGACAGTCTAGAAGAAGCCAGAAGAATCATGGAGAAGTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.29

Weight (kDa)

10.13

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13220
fragaria_vesca	FvH4_2g19580 FvH4_2g19580
malus_domestica	MD05G1180900.v1.1 MD10G1169600.v1.1
prunus_persica	Prupe.8G207500_v2.0.a1 Prupe.8G207500_v2.0.a1
pyrus_communis	pycom05g16660 pycom05g17620 pycom10g14620
rosa_chinensis	RchiOBHm_Chr6g0285341
rosa_laevigata	RLG00000012652
rosa_multiflora	Rmu_sc0011958.1_g000004 Rmu_sc0015970.1_g000001 Rmu_sc0040074.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183340
rosa_rugosa	Rorug06G0173700
rosa_samantha	Rh6AG284400 Rh6BG285200 Rh6CG286700 Rh6DG279700
rosa_wichuraiana	Rw6G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	2 cut(s)	380, 417
AciI	CCGC	2 cut(s)	5, 42
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	229, 439
AluBI	AGCT	4 cut(s)	80, 149, 233, 386
AluI	AGCT	4 cut(s)	80, 149, 233, 386
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	2 cut(s)	19, 33
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	6, 20
BccI	CCATC	3 cut(s)	257, 400, 493
BceAI	ACGGC	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	77, 512
BfmI	CTRYAG	2 cut(s)	333, 381
BisI	GCNGC	2 cut(s)	20, 34
BlsI	GCNGC	2 cut(s)	21, 35
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	280, 472
BoxI	GACNNNNGTC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	2 cut(s)	451, 504
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	107, 159, 188
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	6, 20
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	366
BspACI	CCGC	2 cut(s)	5, 42
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	3 cut(s)	106, 158, 187
BspLI	GGNNCC	2 cut(s)	280, 472
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	455
BssNAI	GTATAC	1 cut(s)	418
BssSI	CACGAG	1 cut(s)	287
Bst1107I	GTATAC	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	216, 509
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	93, 145, 174
BstF5I	GGATG	2 cut(s)	451, 504
BstMAI	GTCTC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 130, 139
BstPAI	GACNNNNGTC	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	333, 381
BstV1I	GCAGC	2 cut(s)	6, 20
BstZ17I	GTATAC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	454
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	451, 504
Cac8I	GCNNGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	2 cut(s)	246, 532
CviJI	RGCY	9 cut(s)	27, 80, 124, 149, 233, 386, 401, 454, 521
CviKI_1	RGCY	9 cut(s)	27, 80, 124, 149, 233, 386, 401, 454, 521
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	3 cut(s)	93, 145, 174
Eco31I	GGTCTC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	295
FaeI	CATG	2 cut(s)	249, 535
FaiI	YATR	9 cut(s)	17, 38, 152, 247, 335, 418, 425, 533, 543
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	245, 531
FblI	GTMKAC	2 cut(s)	380, 417
Fnu4HI	GCNGC	2 cut(s)	20, 34
FokI	GGATG	2 cut(s)	458, 511
Fsp4HI	GCNGC	2 cut(s)	20, 34
FspBI	CTAG	2 cut(s)	77, 512
GluI	GCNGC	2 cut(s)	20, 34
HaeIII	GGCC	1 cut(s)	454
Hin1II	CATG	2 cut(s)	249, 535
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	5 cut(s)	67, 172, 178, 346, 528
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	345, 381, 418
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	2 cut(s)	127, 512
Hpy8I	GTNNAC	3 cut(s)	345, 381, 418
HpyAV	CCTTC	2 cut(s)	244, 443
HpyCH4III	ACNGT	2 cut(s)	216, 509
HpyCH4V	TGCA	4 cut(s)	22, 36, 238, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 130, 139
HpyF3I	CTNAG	3 cut(s)	93, 145, 174
Hsp92II	CATG	2 cut(s)	249, 535
LpnPI	CCDG	8 cut(s)	41, 210, 261, 324, 383, 389, 481, 535
Lsp1109I	GCAGC	2 cut(s)	6, 20
MaeI	CTAG	2 cut(s)	77, 512
MaeIII	GTNAC	2 cut(s)	59, 328
MboII	GAAGA	4 cut(s)	91, 217, 527, 537
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	3 cut(s)	55, 109, 295
MlyI	GAGTC	2 cut(s)	166, 340
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	8 cut(s)	115, 156, 162, 265, 450, 461, 484, 487
MseI	TTAA	2 cut(s)	119, 159
MwoI	GCNNNNNNNGC	3 cut(s)	33, 130, 139
NlaIII	CATG	2 cut(s)	249, 535
NlaIV	GGNNCC	2 cut(s)	280, 472
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	67, 178, 528
PkrI	GCNGC	2 cut(s)	21, 35
PleI	GAGTC	2 cut(s)	166, 340
PpsI	GAGTC	2 cut(s)	166, 340
PshAI	GACNNNNGTC	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	280, 472
PspPI	GGNCC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	119, 159
SatI	GCNGC	2 cut(s)	20, 34
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	2 cut(s)	166, 340
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	7 cut(s)	82, 151, 235, 255, 388, 461, 479
SfcI	CTRYAG	2 cut(s)	333, 381
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	55, 109, 295
SsiI	CCGC	2 cut(s)	5, 42
SspMI	CTAG	2 cut(s)	77, 512
TaaI	ACNGT	2 cut(s)	216, 509
TasI	AATT	3 cut(s)	55, 109, 295
TfiI	GAWTC	3 cut(s)	67, 178, 528
Tru1I	TTAA	2 cut(s)	119, 159
Tru9I	TTAA	2 cut(s)	119, 159
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	19, 33
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	102, 418, 462
TspGWI	ACGGA	2 cut(s)	169, 316
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	2 cut(s)	380, 417
XspI	CTAG	2 cut(s)	77, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.