Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009380

Physical Location & Seq

Genomic Coordinates Reverse (-)

19372751 .. 19375550

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTGGCTCAGTTATGTTGCAGAGCCTCTGCTGCATAATTCCACACTCTCCAAGATGTTACAAGAATCAAACCCTAGCTTTCTCTCACTCTCAATTCTTCTCTTCTAATTCATTTTTAAGGTTAAAGAAGCAGTCTTTGGTCTCAGCTCTTCAAATTAATAAGAGGCAGAGGACTCGGAGGTATCGCTCTGTTCCTGTTGTGTTCGCTGCACAGTCCAATTTCTTAAAAGTTGTACAGACAGTTTGGAAGGTTGGGAGAGATGGAATTGAGGCAGGAACCAATCTTGTGCCGGATTCTGTGCCAAGATCAATAGCAAGGGTTTCTGTGACAGTAGTTGCATTGGCTCTTTCACTCTTTGTACTCAAGTCTTTACTGTCTACAGTTTTCTTTGTGCTGGCTACGATGGGACTTGTATACTTTACATTTATAGCTTTGAATAAGGATGAAGGACCAAAGGGGGGTGGAGGCACCACCTCTACACCAAAGGAGGAGGGGATGGAGGACAGTCTAGAAGAAGCCAGAAGAATCATGGAGAAGTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.17

Weight (kDa)

10.02

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13220
fragaria_vesca	FvH4_2g19580 FvH4_2g19580
malus_domestica	MD05G1180900.v1.1 MD10G1169600.v1.1
prunus_persica	Prupe.8G207500_v2.0.a1 Prupe.8G207500_v2.0.a1
pyrus_communis	pycom05g16660 pycom05g17620 pycom10g14620
rosa_chinensis	RchiOBHm_Chr6g0285341
rosa_laevigata	RLG00000012652
rosa_multiflora	Rmu_sc0011958.1_g000004 Rmu_sc0015970.1_g000001 Rmu_sc0040074.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183340
rosa_rugosa	Rorug06G0173700
rosa_samantha	Rh6AG284400 Rh6BG285200 Rh6CG286700 Rh6DG279700
rosa_wichuraiana	Rw6G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	2 cut(s)	380, 417
AfaI	GTAC	2 cut(s)	237, 363
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	155, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	80, 149, 434
AluI	AGCT	3 cut(s)	80, 149, 434
Alw26I	GTCTC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	33, 209
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	20, 196
BccI	CCATC	3 cut(s)	257, 400, 493
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	77, 512
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	34, 210
BlsI	GCNGC	2 cut(s)	35, 211
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	280, 472
BpuEI	CTTGAG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
BseGI	GGATG	2 cut(s)	451, 504
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	24, 159
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	2 cut(s)	20, 196
BsgI	GTGCAG	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	308
BspCNI	CTCAG	2 cut(s)	23, 158
BspLI	GGNNCC	2 cut(s)	280, 472
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	235
BssMI	GATC	1 cut(s)	308
BssNAI	GTATAC	1 cut(s)	418
Bst1107I	GTATAC	1 cut(s)	418
Bst4CI	ACNGT	6 cut(s)	216, 244, 334, 378, 385, 509
Bst6I	CTCTTC	2 cut(s)	109, 156
BstAUI	TGTACA	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	7, 399
BstDEI	CTNAG	2 cut(s)	10, 145
BstF5I	GGATG	2 cut(s)	451, 504
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	20, 196
BstZ17I	GTATAC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	451, 504
Cac8I	GCNNGC	2 cut(s)	7, 399
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	236, 362
CviAII	CATG	1 cut(s)	532
CviJI	RGCY	9 cut(s)	5, 9, 27, 80, 149, 347, 401, 434, 521
CviKI_1	RGCY	9 cut(s)	5, 9, 27, 80, 149, 347, 401, 434, 521
CviQI	GTAC	2 cut(s)	236, 362
DdeI	CTNAG	2 cut(s)	10, 145
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	109, 156
EarI	CTCTTC	2 cut(s)	109, 156
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	452
FaeI	CATG	1 cut(s)	535
FaiI	YATR	6 cut(s)	17, 38, 418, 431, 533, 543
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	1 cut(s)	531
FblI	GTMKAC	2 cut(s)	380, 417
Fnu4HI	GCNGC	2 cut(s)	34, 210
FokI	GGATG	2 cut(s)	458, 511
Fsp4HI	GCNGC	2 cut(s)	34, 210
FspBI	CTAG	2 cut(s)	77, 512
GluI	GCNGC	2 cut(s)	34, 210
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	1 cut(s)	535
HinfI	GANTC	4 cut(s)	67, 175, 296, 528
HpaII	CCGG	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	381, 418
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	381, 418
HpyAV	CCTTC	2 cut(s)	244, 443
HpyCH4III	ACNGT	6 cut(s)	216, 244, 334, 378, 385, 509
HpyCH4V	TGCA	4 cut(s)	22, 36, 212, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	10, 145
Hsp92II	CATG	1 cut(s)	535
Kzo9I	GATC	1 cut(s)	308
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	5 cut(s)	210, 261, 306, 383, 535
Lsp1109I	GCAGC	2 cut(s)	20, 196
MaeI	CTAG	2 cut(s)	77, 512
MaeIII	GTNAC	2 cut(s)	59, 328
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	5 cut(s)	91, 96, 143, 527, 537
MluCI	AATT	6 cut(s)	39, 95, 109, 156, 220, 267
MlyI	GAGTC	1 cut(s)	169
MseI	TTAA	4 cut(s)	119, 125, 159, 227
MspI	CCGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	2 cut(s)	280, 472
NmuCI	GTSAC	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	67, 296, 528
PkrI	GCNGC	2 cut(s)	35, 211
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	280, 472
PspPI	GGNCC	1 cut(s)	452
RsaI	GTAC	2 cut(s)	237, 363
RsaNI	GTAC	2 cut(s)	236, 362
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	4 cut(s)	119, 125, 159, 227
SatI	GCNGC	2 cut(s)	34, 210
Sau3AI	GATC	1 cut(s)	308
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	169
SetI	ASST	7 cut(s)	82, 125, 151, 185, 255, 436, 479
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	6 cut(s)	39, 95, 109, 156, 220, 267
SspMI	CTAG	2 cut(s)	77, 512
TaaI	ACNGT	6 cut(s)	216, 244, 334, 378, 385, 509
TasI	AATT	6 cut(s)	39, 95, 109, 156, 220, 267
TatI	WGTACW	2 cut(s)	235, 361
TfiI	GAWTC	3 cut(s)	67, 296, 528
Tru1I	TTAA	4 cut(s)	119, 125, 159, 227
Tru9I	TTAA	4 cut(s)	119, 125, 159, 227
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	33, 209
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	102, 462
VpaK11BI	GGWCC	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	2 cut(s)	380, 417
XspI	CTAG	2 cut(s)	77, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.