FvH4_2g21490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014610
Physical Location & Seq
Forward (+)
17845090 .. 17845656
567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21490.t1

Sequence Viewer

Length: 567 bp
ATGTCTTGCTTGAGGCTGAGGCTTCCACCAGCCAGAAAGGCTTGGAAGAGCTTCACTTCCAAACTACACAGCAAGCTCTACAAACGCAAAGCCACCAACAAACCAAGAAATCGAGTCAAGCCCTCCACTACAATCTCTATTCGCGTTCGACCCTACAAGTTTCTCCAGCTACGGTTGCAGCACAAACCACGCTTTTCGCTGCGCTTTCATCATAATTGCCGCAGCCTGCTCCAAAGCCGGCATGCTCATGTGTATGTTGACAAGCTCTTTAAAGAGCCTGCTGTCTCCGAGCTGGTTGCTGAGCGTTGTCAATACCAGAAAACTCCAGAAGCAAAGTGTGTGATCAAGCCTATTGCTAATCGCTCTGTGGCAAGCAAGCAATCTCCATCTGCAGCTAGTGAGAATAACGAGTCTGACGGAGTGACTAGTGCTGCAGATGATATGTGGGAGTCGCTGGGAATTGCCTCCCCCCAAATGGATGGAATCGATAGAAGAGCTGAGGAGTTTATAGCTCGGTTCAGGGCAGAAATGAAGGACCAGGAGACGTTGGCCCGTTGCCATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

189

Amino Acids

21.69

Weight (kDa)

10.21

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 160 - 178 1.2e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20500
fragaria_vesca FvH4_2g21490
malus_domestica MD05G1197200.v1.1
prunus_persica Prupe.8G223700_v2.0.a1
pyrus_communis pycom05g18430 pycom10g15920
rosa_chinensis RchiOBHm_Chr6g0288121
rosa_laevigata RLG00000012436
rosa_multiflora Rmu_sc0001851.1_g000029 Rmu_sc0010766.1_g000005
rosa_roxburghii Rroxscaffold_7G00180480
rosa_rugosa Rorug06G0194400.1
rosa_samantha Rh6AG304600 Rh6BG310600 Rh6CG318700 Rh6DG303600
rosa_wichuraiana Rw6G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 475
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 8 cut(s) 51, 76, 169, 265, 292, 395, 497, 512
AluI AGCT 8 cut(s) 51, 76, 169, 265, 292, 395, 497, 512
Alw26I GTCTC 2 cut(s) 289, 536
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 5 cut(s) 178, 199, 222, 392, 431
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 535, 550
AvaII GGWCC 1 cut(s) 535
BbvCI CCTCAGC 2 cut(s) 17, 498
BbvI GCAGC 5 cut(s) 186, 190, 234, 404, 418
BccI CCATC 2 cut(s) 394, 473
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 539
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 289, 536
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 2 cut(s) 396, 426
BfmI CTRYAG 2 cut(s) 390, 432
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 6 cut(s) 179, 200, 220, 223, 393, 432
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 6 cut(s) 180, 201, 221, 224, 394, 433
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 535
BmgT120I GGNCC 2 cut(s) 535, 550
BmrFI CCNGG 1 cut(s) 539
BpmI CTGGAG 2 cut(s) 149, 309
Bpu10I CCTNAGC 2 cut(s) 17, 498
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 31
Bsa29I ATCGAT 1 cut(s) 486
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse118I RCCGGY 1 cut(s) 237
BseBI CCWGG 1 cut(s) 539
BseCI ATCGAT 1 cut(s) 486
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMII CTCAG 3 cut(s) 8, 291, 489
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 5 cut(s) 186, 190, 234, 404, 418
BseYI CCCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 486
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 2 cut(s) 289, 536
BsmBI CGTCTC 1 cut(s) 536
BsnI GGCC 1 cut(s) 551
Bsp143I GATC 1 cut(s) 342
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 3 cut(s) 9, 292, 490
BspDI ATCGAT 1 cut(s) 486
BspFNI CGCG 1 cut(s) 144
BspMAI CTGCAG 2 cut(s) 394, 436
BspQI GCTCTTC 2 cut(s) 41, 487
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 41, 487
BstC8I GCNNGC 7 cut(s) 74, 227, 239, 243, 279, 373, 377
BstDEI CTNAG 3 cut(s) 17, 300, 498
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 2 cut(s) 289, 536
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 38, 175
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 2 cut(s) 390, 432
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 5 cut(s) 186, 190, 234, 404, 418
BstXI CCANNNNNNTGG 1 cut(s) 479
Bsu15I ATCGAT 1 cut(s) 486
BsuRI GGCC 1 cut(s) 551
BsuTUI ATCGAT 1 cut(s) 486
BtsCI GGATG 1 cut(s) 484
Cac8I GCNNGC 7 cut(s) 74, 227, 239, 243, 279, 373, 377
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 535, 550
ClaI ATCGAT 1 cut(s) 486
CviAII CATG 2 cut(s) 242, 248
DdeI CTNAG 3 cut(s) 17, 300, 498
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 41, 487
EarI CTCTTC 2 cut(s) 41, 487
Eco47I GGWCC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 2 cut(s) 245, 251
FaiI YATR 7 cut(s) 213, 243, 249, 255, 443, 509, 565
FatI CATG 2 cut(s) 241, 247
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 6 cut(s) 179, 200, 220, 223, 393, 432
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 6 cut(s) 179, 200, 220, 223, 393, 432
FspBI CTAG 2 cut(s) 396, 426
GlaI GCGC 1 cut(s) 203
GluI GCNGC 6 cut(s) 179, 200, 220, 223, 393, 432
GsaI CCCAGC 1 cut(s) 458
GsuI CTGGAG 2 cut(s) 149, 309
HaeIII GGCC 1 cut(s) 551
HapII CCGG 1 cut(s) 238
HhaI GCGC 1 cut(s) 204
Hin1II CATG 2 cut(s) 245, 251
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 114, 410, 449, 483
HpaII CCGG 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 289, 415
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 526
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 3 cut(s) 178, 392, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 175
HpyF3I CTNAG 3 cut(s) 17, 300, 498
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 2 cut(s) 245, 251
HspAI GCGC 1 cut(s) 202
KroI GCCGGC 1 cut(s) 237
KroNI GCCGGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 1 cut(s) 342
LguI GCTCTTC 2 cut(s) 41, 487
LmnI GCTCC 1 cut(s) 234
Lsp1109I GCAGC 5 cut(s) 186, 190, 234, 404, 418
MaeI CTAG 2 cut(s) 396, 426
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 2 cut(s) 58, 504
MluCI AATT 2 cut(s) 214, 459
MlyI GAGTC 3 cut(s) 123, 419, 458
MnlI CCTC 5 cut(s) 6, 12, 133, 475, 493
MroNI GCCGGC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 246, 252
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 38, 175
NaeI GCCGGC 1 cut(s) 239
NdeII GATC 1 cut(s) 342
NgoMIV GCCGGC 1 cut(s) 237
NlaIII CATG 2 cut(s) 245, 251
NmuCI GTSAC 1 cut(s) 421
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PciSI GCTCTTC 2 cut(s) 41, 487
PdiI GCCGGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 483
PkrI GCNGC 6 cut(s) 180, 201, 221, 224, 394, 433
PleI GAGTC 3 cut(s) 122, 418, 457
PpsI GAGTC 3 cut(s) 122, 418, 457
Psp6I CCWGG 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 454
PspGI CCWGG 1 cut(s) 537
PspPI GGNCC 2 cut(s) 535, 550
PstI CTGCAG 2 cut(s) 394, 436
RseI CAYNNNNRTG 2 cut(s) 246, 252
SapI GCTCTTC 2 cut(s) 41, 487
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 6 cut(s) 179, 200, 220, 223, 393, 432
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 2 cut(s) 535, 550
SchI GAGTC 3 cut(s) 123, 419, 458
ScrFI CCNGG 1 cut(s) 539
SetI ASST 9 cut(s) 53, 78, 171, 267, 294, 397, 499, 514, 548
SfcI CTRYAG 2 cut(s) 390, 432
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 2 cut(s) 246, 252
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SpeI ACTAGT 1 cut(s) 425
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 214, 459
SsiI CCGC 1 cut(s) 220
SspMI CTAG 2 cut(s) 396, 426
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 112, 148, 486
TasI AATT 2 cut(s) 214, 459
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 5 cut(s) 178, 199, 222, 392, 431
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 197, 545
TspGWI ACGGA 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 535
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 396, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.