Prupe.8G223700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014610
Physical Location & Seq
Forward (+)
20196340 .. 20197503
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G223700.1

Sequence Viewer

Length: 558 bp
ATGTCTTGCTTGAGACTGAGGCTTCCACCGGCCGGAAGGGCTTGGAAGAGCTTCACTTCCAAATTACAGAGCAAGCTCCACAAACCCAAAGGCATCAAAAAACCCAGAAACCGTGTCAAAGCAATCACTGCTGCTGCTGCTTCTTCTTCCTCTTCTGCTTGTGCTTCTGCTCGACTTCGACCCTACAAATTTCTCCAACTGCGTTTCAAACGCAGACGGCGTCTTGCCCTACGTTTTCGCTATAACCGCCCTCAGCTCCTACAGAATCGCAGCACTGCACATGTCTTTGTTGACAAGCTTTTTAAAGAGCCGGCTGTGACTGTGCCAGTCGAGCGCTCTCAGCCTCCGGTAGAAAAGTGCAAGCAAGCTGCTGCTGCTGCAACAACAGCTACTGGAAGTGGGGGCGAGAGAGCTTGTGCTACAGCAGACGATATGTGGGAGTCATTGGGATTTGCTTCCCCTCTGATGCATGGAATTGATGAAAGAGCTGAGGAGTTCATAGCCAGGTTCAGAAAGGAAATGGACGTTCAGGAGAAGCTGGCACGCGATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

186

Amino Acids

20.83

Weight (kDa)

10.83

Isoelectric Point (pI)

69.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20500
fragaria_vesca FvH4_2g21490
malus_domestica MD05G1197200.v1.1
prunus_persica Prupe.8G223700_v2.0.a1
pyrus_communis pycom05g18430 pycom10g15920
rosa_chinensis RchiOBHm_Chr6g0288121
rosa_laevigata RLG00000012436
rosa_multiflora Rmu_sc0001851.1_g000029 Rmu_sc0010766.1_g000005
rosa_roxburghii Rroxscaffold_7G00180480
rosa_rugosa Rorug06G0194400.1
rosa_samantha Rh6AG304600 Rh6BG310600 Rh6CG318700 Rh6DG303600
rosa_wichuraiana Rw6G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 546
AciI CCGC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 220
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 9 cut(s) 51, 76, 256, 298, 368, 389, 413, 488, 538
AluI AGCT 9 cut(s) 51, 76, 256, 298, 368, 389, 413, 488, 538
Alw26I GTCTC 1 cut(s) 7
AlwNI CAGNNNCTG 1 cut(s) 392
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 8 cut(s) 131, 134, 137, 270, 368, 371, 374, 377
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 336
BbvCI CCTCAGC 2 cut(s) 252, 489
BbvI GCAGC 8 cut(s) 118, 121, 124, 282, 355, 358, 361, 364
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 7
BfmI CTRYAG 2 cut(s) 260, 420
BfoI RGCGCY 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 8 cut(s) 132, 135, 138, 271, 369, 372, 375, 378
BlsI GCNGC 8 cut(s) 133, 136, 139, 272, 370, 373, 376, 379
Bme1390I CCNGG 1 cut(s) 505
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 102, 456
Bpu10I CCTNAGC 2 cut(s) 252, 489
BpuEI CTTGAG 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 2 cut(s) 28, 310
Bse1I ACTGG 2 cut(s) 326, 397
BseBI CCWGG 1 cut(s) 505
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 4 cut(s) 8, 266, 353, 480
BseNI ACTGG 2 cut(s) 326, 397
BseRI GAGGAG 1 cut(s) 506
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 8 cut(s) 118, 121, 124, 282, 355, 358, 361, 364
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 546
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 4 cut(s) 29, 33, 311, 347
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 547
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 4 cut(s) 9, 265, 352, 481
BspFNI CGCG 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 28, 310
BsrI ACTGG 2 cut(s) 326, 397
BssAI RCCGGY 2 cut(s) 28, 310
BssMI GATC 1 cut(s) 547
BssNI GRCGYC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 113, 322
Bst6I CTCTTC 2 cut(s) 41, 157
BstACI GRCGYC 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 6 cut(s) 74, 312, 362, 366, 540, 544
BstDEI CTNAG 4 cut(s) 17, 252, 339, 489
BstFNI CGCG 1 cut(s) 546
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 550
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 1 cut(s) 547
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 9 cut(s) 38, 128, 137, 246, 331, 340, 374, 377, 386
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 260, 420
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 8 cut(s) 118, 121, 124, 282, 355, 358, 361, 364
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 32
BtsI GCAGTG 2 cut(s) 126, 273
BtsIMutI CAGTG 2 cut(s) 126, 273
Cac8I GCNNGC 6 cut(s) 74, 312, 362, 366, 540, 544
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 2 cut(s) 28, 310
CseI GACGC 1 cut(s) 209
CviAII CATG 2 cut(s) 281, 470
DdeI CTNAG 4 cut(s) 17, 252, 339, 489
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
DraI TTTAAA 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 41, 157
EarI CTCTTC 2 cut(s) 41, 157
EclXI CGGCCG 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 335
Eco52I CGGCCG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 503
EcoT22I ATGCAT 1 cut(s) 471
FaeI CATG 2 cut(s) 284, 473
FaiI YATR 5 cut(s) 243, 282, 434, 471, 500
FatI CATG 2 cut(s) 280, 469
Fnu4HI GCNGC 8 cut(s) 132, 135, 138, 271, 369, 372, 375, 378
Fsp4HI GCNGC 8 cut(s) 132, 135, 138, 271, 369, 372, 375, 378
GlaI GCGC 1 cut(s) 335
GluI GCNGC 8 cut(s) 132, 135, 138, 271, 369, 372, 375, 378
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 1 cut(s) 32
HapII CCGG 4 cut(s) 29, 33, 311, 347
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 2 cut(s) 284, 473
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 265, 440
HpaII CCGG 4 cut(s) 29, 33, 311, 347
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 465, 512
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 113, 322
HpyCH4IV ACGT 2 cut(s) 232, 525
HpyCH4V TGCA 4 cut(s) 278, 360, 380, 469
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 128, 137, 246, 331, 340, 374, 377, 386
HpyF3I CTNAG 4 cut(s) 17, 252, 339, 489
HpySE526I ACGT 2 cut(s) 232, 525
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 2 cut(s) 284, 473
HspAI GCGC 1 cut(s) 334
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 1 cut(s) 547
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 2 cut(s) 81, 261
Lsp1109I GCAGC 8 cut(s) 118, 121, 124, 282, 355, 358, 361, 364
LweI GCATC 2 cut(s) 102, 456
MaeII ACGT 2 cut(s) 232, 525
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 4 cut(s) 58, 135, 138, 144
MluCI AATT 3 cut(s) 62, 188, 474
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 6 cut(s) 12, 160, 261, 354, 471, 484
Mph1103I ATGCAT 1 cut(s) 471
MroNI GCCGGC 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 303
MspI CCGG 4 cut(s) 29, 33, 311, 347
MspR9I CCNGG 1 cut(s) 505
MvaI CCWGG 1 cut(s) 505
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 9 cut(s) 38, 128, 137, 246, 331, 340, 374, 377, 386
NaeI GCCGGC 1 cut(s) 312
NdeII GATC 1 cut(s) 547
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 2 cut(s) 284, 473
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 1 cut(s) 284
PciI ACATGT 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 265
PflFI GACNNNGTC 1 cut(s) 219
PkrI GCNGC 8 cut(s) 133, 136, 139, 272, 370, 373, 376, 379
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PscI ACATGT 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 8 cut(s) 132, 135, 138, 271, 369, 372, 375, 378
Sau3AI GATC 1 cut(s) 547
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 505
SfaNI GCATC 2 cut(s) 102, 456
SfcI CTRYAG 2 cut(s) 260, 420
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 3 cut(s) 62, 188, 474
SsiI CCGC 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 503
TaaI ACNGT 2 cut(s) 113, 322
TaiI ACGT 2 cut(s) 235, 528
TaqI TCGA 3 cut(s) 172, 178, 330
TasI AATT 3 cut(s) 62, 188, 474
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 2 cut(s) 133, 280
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 8 cut(s) 131, 134, 137, 270, 368, 371, 374, 377
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 487, 495
TspRI CASTG 2 cut(s) 133, 280
Tth111I GACNNNGTC 1 cut(s) 219
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.