MD05G1197200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014610
Physical Location & Seq
Forward (+)
32446952 .. 32447521
570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1197200.v1.1.491

Sequence Viewer

Length: 570 bp
ATGTCTTGCTTGAGATTGAGGCTTCCACCAGCCAGAAGGGCCTGGAAGAGCTTCACCTCCAAACTACAGAGGAAACTCCACAAGCCTAAAGGCATCGCAAAACCCCGAAAAAACTGTGTGAAAGCCATTACTGCTGCTTCTTCATCTTCTGCTTCTCCTGCTTTTTTTGTTTCTTCTGTTGGACTGAAACCCTACAAGTTTCTCCAGCTGCGTTTTAAACGCAAAGGGCGTCTCGCCCTACGTTTTCGATACAACCGGCGTCAGCTTCCTCAGAACCGTGGTAGCGCTGCGCATGTCTACGTTGACAAGCTTTTTAAAGAGCCTGCTGTGACTGAGTTGGTGGGGAGTTCTGAGCCTCCGGTAGCGAAGTGCAAGCAAGCTACCGCTGCTGCTGCCGGTGCTGAAAGTGGGGCTGAGAGAGGATCTCCTGCGACGGCGGATGATATGTGGGAGTCATTGGGATTTGCTTCCCCAATGATGCACGGGATTGACGAAAGAGCTGAGGAGTTCATAGCCAAATTTAGAAAGGAAATGGAGGTTCAGGAGAAGTTGGCACGTGATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

190

Amino Acids

21.07

Weight (kDa)

10.39

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 163 - 181 2.5e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20500
fragaria_vesca FvH4_2g21490
malus_domestica MD05G1197200.v1.1
prunus_persica Prupe.8G223700_v2.0.a1
pyrus_communis pycom05g18430 pycom10g15920
rosa_chinensis RchiOBHm_Chr6g0288121
rosa_laevigata RLG00000012436
rosa_multiflora Rmu_sc0001851.1_g000029 Rmu_sc0010766.1_g000005
rosa_roxburghii Rroxscaffold_7G00180480
rosa_rugosa Rorug06G0194400.1
rosa_samantha Rh6AG304600 Rh6BG310600 Rh6CG318700 Rh6DG303600
rosa_wichuraiana Rw6G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
AccI GTMKAC 1 cut(s) 297
AciI CCGC 2 cut(s) 384, 437
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 1 cut(s) 518
AcvI CACGTG 1 cut(s) 557
AcyI GRCGYC 2 cut(s) 229, 259
AfeI AGCGCT 1 cut(s) 286
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 6 cut(s) 51, 208, 265, 310, 380, 500
AluI AGCT 6 cut(s) 51, 208, 265, 310, 380, 500
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 430
Aor51HI AGCGCT 1 cut(s) 286
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 6 cut(s) 134, 208, 287, 386, 389, 392
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 287, 292
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 46
BbrPI CACGTG 1 cut(s) 557
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 6 cut(s) 121, 195, 274, 373, 376, 379
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 288
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 6 cut(s) 135, 209, 288, 387, 390, 393
BlsI GCNGC 6 cut(s) 136, 210, 289, 388, 391, 394
Bme1390I CCNGG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 102, 468
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 557
BsaHI GRCGYC 2 cut(s) 229, 259
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 358
Bse118I RCCGGY 2 cut(s) 255, 395
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 445
BseMII CTCAG 5 cut(s) 284, 324, 342, 405, 492
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 6 cut(s) 121, 195, 274, 373, 376, 379
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 256, 359, 396
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 422, 559
BspACI CCGC 2 cut(s) 384, 437
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 5 cut(s) 283, 325, 343, 406, 493
BspPI GGATC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 255, 395
BssAI RCCGGY 2 cut(s) 255, 395
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 2 cut(s) 422, 559
BssNI GRCGYC 2 cut(s) 229, 259
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 116, 278
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 2 cut(s) 229, 259
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 3 cut(s) 324, 374, 378
BstDEI CTNAG 5 cut(s) 270, 333, 351, 414, 501
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 2 cut(s) 287, 292
BstKTI GATC 2 cut(s) 425, 562
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 422, 559
BstMWI GCNNNNNNNGC 6 cut(s) 38, 131, 158, 386, 392, 398
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 6 cut(s) 121, 195, 274, 373, 376, 379
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 445
Cac8I GCNNGC 3 cut(s) 324, 374, 378
CfoI GCGC 2 cut(s) 287, 292
Cfr10I RCCGGY 2 cut(s) 255, 395
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 2 cut(s) 218, 248
CviAII CATG 1 cut(s) 293
DdeI CTNAG 5 cut(s) 270, 333, 351, 414, 501
DpnI GATC 2 cut(s) 424, 561
DpnII GATC 2 cut(s) 422, 559
DraI TTTAAA 2 cut(s) 217, 316
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 452
Eco47III AGCGCT 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 1 cut(s) 296
FaiI YATR 3 cut(s) 294, 446, 512
FatI CATG 1 cut(s) 292
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 6 cut(s) 135, 209, 288, 387, 390, 393
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 6 cut(s) 135, 209, 288, 387, 390, 393
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 2 cut(s) 286, 291
GluI GCNGC 6 cut(s) 135, 209, 288, 387, 390, 393
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 1 cut(s) 41
HapII CCGG 3 cut(s) 256, 359, 396
HgaI GACGC 2 cut(s) 218, 248
HhaI GCGC 2 cut(s) 287, 292
Hin1I GRCGYC 2 cut(s) 229, 259
Hin1II CATG 1 cut(s) 296
Hin6I GCGC 2 cut(s) 285, 290
HinP1I GCGC 2 cut(s) 285, 290
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 452
HpaII CCGG 3 cut(s) 256, 359, 396
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 298, 304
Hpy188I TCNGA 2 cut(s) 273, 352
Hpy188III TCNNGA 1 cut(s) 542
Hpy8I GTNNAC 2 cut(s) 298, 304
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 116, 278
HpyCH4IV ACGT 3 cut(s) 241, 300, 556
HpyCH4V TGCA 2 cut(s) 372, 481
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 131, 158, 386, 392, 398
HpyF3I CTNAG 5 cut(s) 270, 333, 351, 414, 501
HpySE526I ACGT 3 cut(s) 241, 300, 556
Hsp92I GRCGYC 2 cut(s) 229, 259
Hsp92II CATG 1 cut(s) 296
HspAI GCGC 2 cut(s) 285, 290
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 2 cut(s) 422, 559
LguI GCTCTTC 1 cut(s) 41
Lsp1109I GCAGC 6 cut(s) 121, 195, 274, 373, 376, 379
LweI GCATC 2 cut(s) 102, 468
MaeII ACGT 3 cut(s) 241, 300, 556
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 424, 561
MboI GATC 2 cut(s) 422, 559
MboII GAAGA 4 cut(s) 58, 132, 138, 165
MflI RGATCY 1 cut(s) 422
MluCI AATT 1 cut(s) 518
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 8 cut(s) 12, 63, 67, 279, 366, 413, 496, 529
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 2 cut(s) 216, 315
MspA1I CMGCKG 2 cut(s) 208, 386
MspI CCGG 3 cut(s) 256, 359, 396
MspR9I CCNGG 1 cut(s) 43
MteI GCGCNGCGC 1 cut(s) 288
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 6 cut(s) 38, 131, 158, 386, 392, 398
NdeII GATC 2 cut(s) 422, 559
NlaIII CATG 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 328
NsbI TGCGCA 1 cut(s) 291
NspI RCATGY 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 2 cut(s) 226, 489
PdmI GAANNNNTTC 1 cut(s) 50
PkrI GCNGC 6 cut(s) 136, 210, 289, 388, 391, 394
PleI GAGTC 1 cut(s) 460
PmaCI CACGTG 1 cut(s) 557
PmlI CACGTG 1 cut(s) 557
PpsI GAGTC 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 41
PspCI CACGTG 1 cut(s) 557
PspGI CCWGG 1 cut(s) 41
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 216, 315
SatI GCNGC 6 cut(s) 135, 209, 288, 387, 390, 393
Sau3AI GATC 2 cut(s) 422, 559
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 43
SfaNI GCATC 2 cut(s) 102, 468
SfcI CTRYAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 1 cut(s) 518
SsiI CCGC 2 cut(s) 384, 437
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 116, 278
TaiI ACGT 3 cut(s) 244, 303, 559
TaqI TCGA 1 cut(s) 247
TasI AATT 1 cut(s) 518
Tru1I TTAA 2 cut(s) 216, 315
Tru9I TTAA 2 cut(s) 216, 315
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 6 cut(s) 134, 208, 287, 386, 389, 392
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 132, 499
XapI RAATTY 1 cut(s) 518
XceI RCATGY 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.