Rh6BG310600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014610
Physical Location & Seq
Forward (+)
53979582 .. 53980154
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG310600.1

Sequence Viewer

Length: 573 bp
ATGTCTTGCTTGAGGCTGAGGCTTCCACCAGCCAGAAAGGCTTGGAAGAGCTTCACTTCCAAACTACACAGCAAGCTCCATAAACGCAAAGCCATCAACAAATCCAGAAATCGAGTCAAGCCCTCCACTACAATCTCTATTCGAGTTCGACCCTACAAGTTTCTTCAGCTACGCTTGCAGCGCAAACCACGCTTTTCCCTGCGCTTTAGCCAGAATTGTCGTAGCCTGCTTCAAAACAGGCATGCACATGTTTATGTGGACAAGCTCTTTAAAGAGCCTGCTGTCTCCGAGCTAGTTGCTGAGCGTTGTCAACAGCAGAAAACTCCACCAGCAAAGTGTGTGATCAAGACTATTGAGGATCGCTCTGTACCAGAAGCAAGCAAGCAATCTCAATCTGCAGTTGGTGAGAATAGCGAGTCTGAAGGAGTAACCAGTGCTGCAGATGATATGTGGGAGTCACTGGGATTTGCCTCCCCCCAGATGGATGGAATTGATGAAAGAGCCGAGGAGTTTATAGCTCGGTTCAGGGCAGAAATGAAGGACCAGGAGACGTTGGCCCGACGCCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

190

Amino Acids

21.95

Weight (kDa)

10.22

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 162 - 180 5.7e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20500
fragaria_vesca FvH4_2g21490
malus_domestica MD05G1197200.v1.1
prunus_persica Prupe.8G223700_v2.0.a1
pyrus_communis pycom05g18430 pycom10g15920
rosa_chinensis RchiOBHm_Chr6g0288121
rosa_laevigata RLG00000012436
rosa_multiflora Rmu_sc0001851.1_g000029 Rmu_sc0010766.1_g000005
rosa_roxburghii Rroxscaffold_7G00180480
rosa_rugosa Rorug06G0194400.1
rosa_samantha Rh6AG304600 Rh6BG310600 Rh6CG318700 Rh6DG303600
rosa_wichuraiana Rw6G026370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 366
AcuI CTGAAG 2 cut(s) 149, 441
AcyI GRCGYC 1 cut(s) 562
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 6 cut(s) 51, 76, 169, 265, 292, 518
AluI AGCT 6 cut(s) 51, 76, 169, 265, 292, 518
Alw26I GTCTC 2 cut(s) 289, 542
AlwI GGATC 1 cut(s) 366
AoxI GGCC 1 cut(s) 555
ApeKI GCWGC 2 cut(s) 178, 437
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 183, 204
AspS9I GGNCC 2 cut(s) 541, 556
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 190, 424
BccI CCATC 3 cut(s) 101, 475, 479
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 289, 542
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 396, 438
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 2 cut(s) 179, 438
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 2 cut(s) 180, 439
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 541, 556
BmrFI CCNGG 1 cut(s) 545
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 562
BsaJI CCNNGG 1 cut(s) 504
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 432, 465
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 2 cut(s) 8, 291
BseNI ACTGG 2 cut(s) 432, 465
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 2 cut(s) 190, 424
BshFI GGCC 1 cut(s) 557
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 289, 542
BsmBI CGTCTC 1 cut(s) 542
BsnI GGCC 1 cut(s) 557
Bsp143I GATC 2 cut(s) 342, 358
Bsp1720I GCTNAGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 557
BspCNI CTCAG 2 cut(s) 9, 292
BspMAI CTGCAG 2 cut(s) 400, 442
BspPI GGATC 1 cut(s) 366
BspQI GCTCTTC 1 cut(s) 41
BsrI ACTGG 2 cut(s) 432, 465
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 2 cut(s) 342, 358
BssNI GRCGYC 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 562
BstC8I GCNNGC 7 cut(s) 74, 176, 227, 243, 279, 379, 383
BstDEI CTNAG 2 cut(s) 17, 300
BstF5I GGATG 1 cut(s) 490
BstHHI GCGC 2 cut(s) 183, 204
BstKTI GATC 2 cut(s) 345, 361
BstMAI GTCTC 2 cut(s) 289, 542
BstMBI GATC 2 cut(s) 342, 358
BstMWI GCNNNNNNNGC 4 cut(s) 38, 175, 180, 189
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 2 cut(s) 245, 251
BstSCI CCNGG 1 cut(s) 543
BstSFI CTRYAG 2 cut(s) 396, 438
BstV1I GCAGC 2 cut(s) 190, 424
BstXI CCANNNNNNTGG 1 cut(s) 485
BsuRI GGCC 1 cut(s) 557
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 439, 458
Cac8I GCNNGC 7 cut(s) 74, 176, 227, 243, 279, 379, 383
CfoI GCGC 2 cut(s) 183, 204
Cfr13I GGNCC 2 cut(s) 541, 556
Csp6I GTAC 1 cut(s) 368
CviAII CATG 2 cut(s) 242, 248
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 2 cut(s) 17, 300
DpnI GATC 2 cut(s) 344, 360
DpnII GATC 2 cut(s) 342, 358
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 149, 441
EcoRII CCWGG 1 cut(s) 543
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 2 cut(s) 245, 251
FaiI YATR 6 cut(s) 81, 243, 249, 255, 449, 515
FatI CATG 2 cut(s) 241, 247
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 179, 438
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 2 cut(s) 179, 438
FspBI CTAG 1 cut(s) 293
GlaI GCGC 2 cut(s) 182, 203
GluI GCNGC 2 cut(s) 179, 438
HaeIII GGCC 1 cut(s) 557
HhaI GCGC 2 cut(s) 183, 204
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 2 cut(s) 245, 251
Hin6I GCGC 2 cut(s) 181, 202
HinP1I GCGC 2 cut(s) 181, 202
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HinfI GANTC 3 cut(s) 114, 416, 455
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 259, 311
Hpy188I TCNGA 2 cut(s) 289, 421
Hpy188III TCNNGA 2 cut(s) 105, 346
Hpy8I GTNNAC 2 cut(s) 259, 311
Hpy99I CGWCG 1 cut(s) 564
HpyAV CCTTC 2 cut(s) 416, 532
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 4 cut(s) 178, 245, 398, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 175, 180, 189
HpyF3I CTNAG 2 cut(s) 17, 300
HpySE526I ACGT 1 cut(s) 551
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 2 cut(s) 245, 251
HspAI GCGC 2 cut(s) 181, 202
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 2 cut(s) 342, 358
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 2 cut(s) 190, 424
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 2 cut(s) 427, 456
MalI GATC 2 cut(s) 344, 360
MboI GATC 2 cut(s) 342, 358
MboII GAAGA 2 cut(s) 58, 155
MluCI AATT 2 cut(s) 214, 489
MlyI GAGTC 3 cut(s) 123, 425, 464
MnlI CCTC 6 cut(s) 6, 12, 133, 349, 481, 499
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 246, 252
MspR9I CCNGG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 4 cut(s) 38, 175, 180, 189
NdeII GATC 2 cut(s) 342, 358
NlaIII CATG 2 cut(s) 245, 251
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 456
NspI RCATGY 2 cut(s) 245, 251
PaeI GCATGC 1 cut(s) 245
PciI ACATGT 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 180, 439
PleI GAGTC 3 cut(s) 122, 424, 463
PpsI GAGTC 3 cut(s) 122, 424, 463
PscI ACATGT 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspPI GGNCC 2 cut(s) 541, 556
PstI CTGCAG 2 cut(s) 400, 442
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 2 cut(s) 246, 252
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 2 cut(s) 179, 438
Sau3AI GATC 2 cut(s) 342, 358
Sau96I GGNCC 2 cut(s) 541, 556
SchI GAGTC 3 cut(s) 123, 425, 464
ScrFI CCNGG 1 cut(s) 545
SetI ASST 7 cut(s) 53, 78, 171, 267, 294, 520, 554
SfcI CTRYAG 2 cut(s) 396, 438
SinI GGWCC 1 cut(s) 541
SmiMI CAYNNNNRTG 2 cut(s) 246, 252
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 214, 489
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 543
TaiI ACGT 1 cut(s) 554
TaqI TCGA 3 cut(s) 112, 142, 148
TasI AATT 2 cut(s) 214, 489
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 439, 465
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 2 cut(s) 178, 437
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 2 cut(s) 510, 551
TspRI CASTG 2 cut(s) 439, 465
VpaK11BI GGWCC 1 cut(s) 541
XceI RCATGY 2 cut(s) 245, 251
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.